RNA–Protein interactions for RNA: ENST00000415758.1

DDX56-202, Transcript of DEAD-box helicase 56, humanhuman

TSL 5

Gene DDX56, Length 1,287 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-202ENST00000415758 BCORQ6W2J9 1755 aa20.68■□□□□ 0.9
DDX56-202ENST00000415758 KCNQ3O43525 872 aa20.68■□□□□ 0.9
DDX56-202ENST00000415758 ST5P78524 1137 aa20.68■□□□□ 0.9
DDX56-202ENST00000415758 DZIP3Q86Y13 1208 aaKnown RBP20.68■□□□□ 0.9
DDX56-202ENST00000415758 TNS4Q8IZW8 715 aa20.68■□□□□ 0.9
DDX56-202ENST00000415758 USP16Q9Y5T5 823 aa20.68■□□□□ 0.9
DDX56-202ENST00000415758 HSPA1AP0DMV8 641 aaKnown RBP20.67■□□□□ 0.9
DDX56-202ENST00000415758 HSPA1BP0DMV9 641 aaKnown RBP20.67■□□□□ 0.9
DDX56-202ENST00000415758 PRPF40BQ6NWY9 871 aaKnown RBP20.67■□□□□ 0.9
DDX56-202ENST00000415758 C7orf43Q8WVR3 580 aa20.67■□□□□ 0.9
DDX56-202ENST00000415758 RGL2O15211 777 aa20.66■□□□□ 0.9
DDX56-202ENST00000415758 DDNO94850 711 aaPredicted RBP20.66■□□□□ 0.9
DDX56-202ENST00000415758 CHADLQ6NUI6 762 aa20.66■□□□□ 0.9
DDX56-202ENST00000415758 RSPH6AQ9H0K4 717 aa20.66■□□□□ 0.9
DDX56-202ENST00000415758 CREBZFQ9NS37 354 aa20.66■□□□□ 0.9
DDX56-202ENST00000415758 NPHP1O15259 732 aa20.65■□□□□ 0.9
DDX56-202ENST00000415758 PRKAR2BP31323 418 aa20.65■□□□□ 0.9
DDX56-202ENST00000415758 CACNA1SQ13698 1873 aa20.64■□□□□ 0.9
DDX56-202ENST00000415758 KLRG2A4D1S0 409 aaPredicted RBP20.64■□□□□ 0.89
DDX56-202ENST00000415758 SNRPA1P09661 255 aaKnown RBP20.63■□□□□ 0.89
DDX56-202ENST00000415758 L3MBTL3Q96JM7 780 aaPredicted RBP20.63■□□□□ 0.89
DDX56-202ENST00000415758 IQCA1LA6NCM1 817 aa20.62■□□□□ 0.89
DDX56-202ENST00000415758 POTEIP0CG38 1075 aa20.62■□□□□ 0.89
DDX56-202ENST00000415758 POTEJP0CG39 1038 aa20.62■□□□□ 0.89
DDX56-202ENST00000415758 NBPF5PQ86XG9 351 aaPredicted RBP20.62■□□□□ 0.89
DDX56-202ENST00000415758 CFAP53Q96M91 514 aa20.62■□□□□ 0.89
DDX56-202ENST00000415758 ZNF652Q9Y2D9 606 aa20.62■□□□□ 0.89
DDX56-202ENST00000415758 SCN4AP35499 1836 aa20.62■□□□□ 0.89
DDX56-202ENST00000415758 PRAMEF22A3QJZ6 481 aa20.61■□□□□ 0.89
DDX56-202ENST00000415758 NPR1P16066 1061 aa20.61■□□□□ 0.89
DDX56-202ENST00000415758 TPTE2Q6XPS3 522 aa20.61■□□□□ 0.89
DDX56-202ENST00000415758 PIP4K2AP48426 406 aaPredicted RBP20.6■□□□□ 0.89
DDX56-202ENST00000415758 CNGB1Q14028 1251 aaPredicted RBP20.6■□□□□ 0.89
DDX56-202ENST00000415758 CCDC93Q567U6 631 aa20.6■□□□□ 0.89
DDX56-202ENST00000415758 NUDCQ9Y266 331 aa20.6■□□□□ 0.89
DDX56-202ENST00000415758 PASKQ96RG2 1323 aa20.59■□□□□ 0.89
DDX56-202ENST00000415758 NBPF26B4DH59 902 aa20.59■□□□□ 0.89
DDX56-202ENST00000415758 HTATSF1O43719 755 aaKnown RBP20.59■□□□□ 0.89
DDX56-202ENST00000415758 NBPF10Q6P3W6 841 aaKnown RBP20.59■□□□□ 0.89
DDX56-202ENST00000415758 LDHDQ86WU2 507 aa20.59■□□□□ 0.89
DDX56-202ENST00000415758 NBPF15Q8N660 670 aa20.59■□□□□ 0.89
DDX56-202ENST00000415758 RTF1Q92541 710 aaKnown RBP20.59■□□□□ 0.89
DDX56-202ENST00000415758 TAF1DQ9H5J8 278 aaPredicted RBP20.59■□□□□ 0.89
DDX56-202ENST00000415758 CAPN15O75808 1086 aa20.58■□□□□ 0.89
DDX56-202ENST00000415758 FKBP4Q02790 459 aaKnown RBP eCLIP20.58■□□□□ 0.89
DDX56-202ENST00000415758 MCM10Q7L590 875 aa20.58■□□□□ 0.89
DDX56-202ENST00000415758 MKRN1Q9UHC7 482 aaKnown RBP20.58■□□□□ 0.89
DDX56-202ENST00000415758 RTKN2Q8IZC4 609 aa20.57■□□□□ 0.88
DDX56-202ENST00000415758 NIP7Q9Y221 180 aaKnown RBP eCLIP20.57■□□□□ 0.88
DDX56-202ENST00000415758 CNTNAP1P78357 1384 aa20.56■□□□□ 0.88
DDX56-202ENST00000415758 ITGBL1O95965 494 aaPredicted RBP20.55■□□□□ 0.88
DDX56-202ENST00000415758 U2AF1L5P0DN76 240 aaPredicted RBP20.55■□□□□ 0.88
DDX56-202ENST00000415758 ALDH1B1P30837 517 aa20.55■□□□□ 0.88
DDX56-202ENST00000415758 U2AF1Q01081 240 aaKnown RBP eCLIP20.55■□□□□ 0.88
DDX56-202ENST00000415758 ZNF277Q9NRM2 450 aaPredicted RBP20.54■□□□□ 0.88
DDX56-202ENST00000415758 FZD9O00144 591 aa20.53■□□□□ 0.88
DDX56-202ENST00000415758 PPP2R1AP30153 589 aa20.53■□□□□ 0.88
DDX56-202ENST00000415758 DCTN1Q14203 1278 aa20.53■□□□□ 0.88
DDX56-202ENST00000415758 TAF7Q15545 349 aaPredicted RBP20.53■□□□□ 0.88
DDX56-202ENST00000415758 ZNF541Q9H0D2 1346 aa20.53■□□□□ 0.88
DDX56-202ENST00000415758 ADAMTSL1Q8N6G6 1762 aa20.52■□□□□ 0.88
DDX56-202ENST00000415758 TMEM88BA6NKF7 163 aa20.52■□□□□ 0.88
DDX56-202ENST00000415758 HLFQ16534 295 aa20.52■□□□□ 0.88
DDX56-202ENST00000415758 CRY2Q49AN0 593 aa20.52■□□□□ 0.88
DDX56-202ENST00000415758 OLFM4Q6UX06 510 aa20.52■□□□□ 0.88
DDX56-202ENST00000415758 HACL1Q9UJ83 578 aa20.52■□□□□ 0.88
DDX56-202ENST00000415758 IARSP41252 1262 aaKnown RBP20.51■□□□□ 0.87
DDX56-202ENST00000415758 PNMA8AQ86V59 439 aaPredicted RBP20.51■□□□□ 0.87
DDX56-202ENST00000415758 SNED1Q8TER0 1413 aa20.51■□□□□ 0.87
DDX56-202ENST00000415758 ERVV-1B6SEH8 477 aa20.5■□□□□ 0.87
DDX56-202ENST00000415758 EPHX2P34913 555 aa20.5■□□□□ 0.87
DDX56-202ENST00000415758 SYNE4Q8N205 404 aa20.5■□□□□ 0.87
DDX56-202ENST00000415758 PSMD1Q99460 953 aa20.5■□□□□ 0.87
DDX56-202ENST00000415758 FOXN1O15353 648 aa20.49■□□□□ 0.87
DDX56-202ENST00000415758 GTF2E1P29083 439 aaPredicted RBP20.49■□□□□ 0.87
DDX56-202ENST00000415758 CC2D2BQ6DHV5 1058 aa20.49■□□□□ 0.87
DDX56-202ENST00000415758 GPC2Q8N158 579 aa20.49■□□□□ 0.87
DDX56-202ENST00000415758 NYXQ9GZU5 481 aa20.49■□□□□ 0.87
DDX56-202ENST00000415758 PRDM10Q9NQV6 1147 aa20.49■□□□□ 0.87
DDX56-202ENST00000415758 LAMB4A4D0S4 1761 aa20.49■□□□□ 0.87
DDX56-202ENST00000415758 FAM177BA6PVY3 158 aa20.48■□□□□ 0.87
DDX56-202ENST00000415758 VEGFBP49765 207 aa20.48■□□□□ 0.87
DDX56-202ENST00000415758 EAPPQ56P03 285 aaPredicted RBP20.48■□□□□ 0.87
DDX56-202ENST00000415758 PNISRQ8TF01 805 aaKnown RBP20.47■□□□□ 0.87
DDX56-202ENST00000415758 MIS18AQ9NYP9 233 aa20.47■□□□□ 0.87
DDX56-202ENST00000415758 NUP98P52948 1817 aa20.47■□□□□ 0.87
DDX56-202ENST00000415758 HOXA10P31260 410 aaPredicted RBP20.46■□□□□ 0.87
DDX56-202ENST00000415758 GRIPAP1Q4V328 841 aa20.46■□□□□ 0.87
DDX56-202ENST00000415758 CNTROBQ8N137 903 aa20.46■□□□□ 0.87
DDX56-202ENST00000415758 JDP2Q8WYK2 163 aa20.46■□□□□ 0.87
DDX56-202ENST00000415758 CLEC11AQ9Y240 323 aa20.46■□□□□ 0.87
DDX56-202ENST00000415758 RNF123Q5XPI4 1314 aa20.46■□□□□ 0.87
DDX56-202ENST00000415758 MAP3K15Q6ZN16 1313 aa20.46■□□□□ 0.87
DDX56-202ENST00000415758 RIC1Q4ADV7 1423 aa20.45■□□□□ 0.86
DDX56-202ENST00000415758 KDM3BQ7LBC6 1761 aa20.45■□□□□ 0.86
DDX56-202ENST00000415758 RASSF10A6NK89 507 aa20.45■□□□□ 0.86
DDX56-202ENST00000415758 WBP1LQ9NX94 342 aa20.45■□□□□ 0.86
DDX56-202ENST00000415758 ABCC12Q96J65 1359 aa20.45■□□□□ 0.86
DDX56-202ENST00000415758 IBTKQ9P2D0 1353 aaPredicted RBP20.45■□□□□ 0.86
DDX56-202ENST00000415758 CTCFP49711 727 aaPredicted RBP20.44■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms