RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 L3MBTL2Q969R5 705 aa15.27■□□□□ 0.04
CCDC88A-204ENST00000413716 JAKMIP1Q96N16 626 aaKnown RBP15.27■□□□□ 0.04
CCDC88A-204ENST00000413716 WDR70Q9NW82 654 aa15.27■□□□□ 0.04
CCDC88A-204ENST00000413716 CAPN2P17655 700 aa15.27■□□□□ 0.04
CCDC88A-204ENST00000413716 PCK1P35558 622 aa15.27■□□□□ 0.04
CCDC88A-204ENST00000413716 GSTA5Q7RTV2 222 aa15.27■□□□□ 0.04
CCDC88A-204ENST00000413716 UBE2Q2Q8WVN8 375 aa15.27■□□□□ 0.04
CCDC88A-204ENST00000413716 NCAPGQ9BPX3 1015 aa15.27■□□□□ 0.04
CCDC88A-204ENST00000413716 TSNAXIP1Q2TAA8 658 aa15.27■□□□□ 0.03
CCDC88A-204ENST00000413716 CPLX4Q7Z7G2 160 aa15.27■□□□□ 0.03
CCDC88A-204ENST00000413716 ZSCAN29Q8IWY8 852 aaPredicted RBP15.27■□□□□ 0.03
CCDC88A-204ENST00000413716 CCDC196A0A1B0GTZ2 297 aa15.27■□□□□ 0.03
CCDC88A-204ENST00000413716 CRCPO75575 148 aa15.27■□□□□ 0.03
CCDC88A-204ENST00000413716 ERCC5P28715 1186 aaPredicted RBP15.27■□□□□ 0.03
CCDC88A-204ENST00000413716 TUBB4BP68371 445 aa15.27■□□□□ 0.03
CCDC88A-204ENST00000413716 XPCQ01831 940 aaPredicted RBP15.27■□□□□ 0.03
CCDC88A-204ENST00000413716 CNTLNQ9NXG0 1405 aa15.26■□□□□ 0.03
CCDC88A-204ENST00000413716 A0A087WZG4 1122 aa15.26■□□□□ 0.03
CCDC88A-204ENST00000413716 BUB1BO60566 1050 aaPredicted RBP15.26■□□□□ 0.03
CCDC88A-204ENST00000413716 CCDC50Q8IVM0 306 aa15.26■□□□□ 0.03
CCDC88A-204ENST00000413716 CTAGE9A4FU28 777 aa15.26■□□□□ 0.03
CCDC88A-204ENST00000413716 AMPD3Q01432 767 aa15.26■□□□□ 0.03
CCDC88A-204ENST00000413716 PRKRIP1Q9H875 184 aaPredicted RBP15.26■□□□□ 0.03
CCDC88A-204ENST00000413716 SEC62Q99442 399 aaKnown RBP15.26■□□□□ 0.03
CCDC88A-204ENST00000413716 CHMP4BP1P59074 171 aa15.26■□□□□ 0.03
CCDC88A-204ENST00000413716 LRSAM1Q6UWE0 723 aa15.26■□□□□ 0.03
CCDC88A-204ENST00000413716 TMC6Q7Z403 805 aa15.26■□□□□ 0.03
CCDC88A-204ENST00000413716 SELENOSQ9BQE4 189 aa15.26■□□□□ 0.03
CCDC88A-204ENST00000413716 TMCO4Q5TGY1 634 aa15.26■□□□□ 0.03
CCDC88A-204ENST00000413716 CCT4P50991 539 aaKnown RBP15.26■□□□□ 0.03
CCDC88A-204ENST00000413716 PYM1Q9BRP8 204 aaKnown RBP15.25■□□□□ 0.03
CCDC88A-204ENST00000413716 U3KPZ7 1027 aaPredicted RBP15.25■□□□□ 0.03
CCDC88A-204ENST00000413716 ZMYND15Q9H091 742 aa15.25■□□□□ 0.03
CCDC88A-204ENST00000413716 SYCP3Q8IZU3 236 aa15.25■□□□□ 0.03
CCDC88A-204ENST00000413716 HMOX1P09601 288 aa15.25■□□□□ 0.03
CCDC88A-204ENST00000413716 RAB3IPQ96QF0 476 aaPredicted RBP15.25■□□□□ 0.03
CCDC88A-204ENST00000413716 MCM4P33991 863 aa15.25■□□□□ 0.03
CCDC88A-204ENST00000413716 KRT13P13646 458 aa15.24■□□□□ 0.03
CCDC88A-204ENST00000413716 SH3BGRP55822 239 aaPredicted RBP15.24■□□□□ 0.03
CCDC88A-204ENST00000413716 CCT6BQ92526 530 aa15.24■□□□□ 0.03
CCDC88A-204ENST00000413716 WDHD1O75717 1129 aaPredicted RBP15.24■□□□□ 0.03
CCDC88A-204ENST00000413716 GAS8O95995 478 aa15.24■□□□□ 0.03
CCDC88A-204ENST00000413716 PIP4K2BP78356 416 aa15.24■□□□□ 0.03
CCDC88A-204ENST00000413716 PHLDB2Q86SQ0 1253 aa15.24■□□□□ 0.03
CCDC88A-204ENST00000413716 BICDL2A1A5D9 508 aa15.24■□□□□ 0.03
CCDC88A-204ENST00000413716 MCM6Q14566 821 aa15.24■□□□□ 0.03
CCDC88A-204ENST00000413716 TACC3Q9Y6A5 838 aa15.24■□□□□ 0.03
CCDC88A-204ENST00000413716 CCDC40Q4G0X9 1142 aa15.24■□□□□ 0.03
CCDC88A-204ENST00000413716 DDX55Q8NHQ9 600 aaKnown RBP eCLIP15.24■□□□□ 0.03
CCDC88A-204ENST00000413716 SPTY2D1Q68D10 685 aaPredicted RBP15.24■□□□□ 0.03
CCDC88A-204ENST00000413716 B4GALNT4Q76KP1 1039 aa15.24■□□□□ 0.03
CCDC88A-204ENST00000413716 CNNM3Q8NE01 707 aa15.24■□□□□ 0.03
CCDC88A-204ENST00000413716 EFCAB2Q5VUJ9 269 aa15.24■□□□□ 0.03
CCDC88A-204ENST00000413716 VPS52Q8N1B4 723 aa15.24■□□□□ 0.03
CCDC88A-204ENST00000413716 MYO1BO43795 1136 aa15.23■□□□□ 0.03
CCDC88A-204ENST00000413716 NEDD9Q14511 834 aa15.23■□□□□ 0.03
CCDC88A-204ENST00000413716 PHF23Q9BUL5 403 aaPredicted RBP15.23■□□□□ 0.03
CCDC88A-204ENST00000413716 STRN4Q9NRL3 753 aa15.23■□□□□ 0.03
CCDC88A-204ENST00000413716 MRVI1Q9Y6F6 885 aa15.23■□□□□ 0.03
CCDC88A-204ENST00000413716 MINK1Q8N4C8 1332 aaPredicted RBP15.23■□□□□ 0.03
CCDC88A-204ENST00000413716 INTS8Q75QN2 995 aaKnown RBP15.23■□□□□ 0.03
CCDC88A-204ENST00000413716 CAVIN2O95810 425 aa15.23■□□□□ 0.03
CCDC88A-204ENST00000413716 PPP1R1BQ9UD71 204 aaPredicted RBP15.23■□□□□ 0.03
CCDC88A-204ENST00000413716 CALML4Q96GE6 196 aa15.23■□□□□ 0.03
CCDC88A-204ENST00000413716 ATP5DP30049 168 aa15.23■□□□□ 0.03
CCDC88A-204ENST00000413716 TCERG1LQ5VWI1 586 aa15.23■□□□□ 0.03
CCDC88A-204ENST00000413716 CWC27Q6UX04 472 aaKnown RBP15.23■□□□□ 0.03
CCDC88A-204ENST00000413716 ZNF365Q70YC5 407 aa15.23■□□□□ 0.03
CCDC88A-204ENST00000413716 RASSF4Q9H2L5 321 aa15.23■□□□□ 0.03
CCDC88A-204ENST00000413716 CLNS1AP54105 237 aaKnown RBP15.23■□□□□ 0.03
CCDC88A-204ENST00000413716 AACSQ86V21 672 aa15.23■□□□□ 0.03
CCDC88A-204ENST00000413716 DACT3Q96B18 629 aaPredicted RBP15.22■□□□□ 0.03
CCDC88A-204ENST00000413716 SIL1Q9H173 461 aa15.22■□□□□ 0.03
CCDC88A-204ENST00000413716 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP15.22■□□□□ 0.035e-7■■□□□ 13.2
CCDC88A-204ENST00000413716 MTUS1Q9ULD2 1270 aa15.22■□□□□ 0.03
CCDC88A-204ENST00000413716 A0A1B0GUL7 405 aa15.22■□□□□ 0.03
CCDC88A-204ENST00000413716 CACYBPQ9HB71 228 aaKnown RBP15.22■□□□□ 0.03
CCDC88A-204ENST00000413716 TRPC3Q13507 836 aa15.22■□□□□ 0.03
CCDC88A-204ENST00000413716 GEN1Q17RS7 908 aa15.22■□□□□ 0.03
CCDC88A-204ENST00000413716 AIDAQ96BJ3 306 aa15.22■□□□□ 0.03
CCDC88A-204ENST00000413716 FAM177BA6PVY3 158 aa15.21■□□□□ 0.03
CCDC88A-204ENST00000413716 GNG11P61952 73 aa15.21■□□□□ 0.03
CCDC88A-204ENST00000413716 FYB2Q5VWT5 728 aa15.21■□□□□ 0.03
CCDC88A-204ENST00000413716 AKAP2Q9Y2D5 859 aa15.21■□□□□ 0.03
CCDC88A-204ENST00000413716 CPLX3Q8WVH0 158 aa15.21■□□□□ 0.03
CCDC88A-204ENST00000413716 UTP14AQ9BVJ6 771 aaKnown RBP15.21■□□□□ 0.03
CCDC88A-204ENST00000413716 ZC4H2Q9NQZ6 224 aa15.21■□□□□ 0.03
CCDC88A-204ENST00000413716 USP37Q86T82 979 aa15.21■□□□□ 0.03
CCDC88A-204ENST00000413716 TMOD2Q9NZR1 351 aa15.21■□□□□ 0.03
CCDC88A-204ENST00000413716 WHAMMP3Q1A5X7 153 aa15.21■□□□□ 0.03
CCDC88A-204ENST00000413716 LRP2BPQ9P2M1 347 aa15.21■□□□□ 0.03
CCDC88A-204ENST00000413716 GOLGA8AA7E2F4 631 aa15.21■□□□□ 0.03
CCDC88A-204ENST00000413716 GOLGA8BA8MQT2 603 aa15.21■□□□□ 0.03
CCDC88A-204ENST00000413716 TBC1D31Q96DN5 1066 aa15.21■□□□□ 0.03
CCDC88A-204ENST00000413716 VCX3AQ9NNX9 186 aa15.21■□□□□ 0.03
CCDC88A-204ENST00000413716 BAG4O95429 457 aaKnown RBP15.21■□□□□ 0.02
CCDC88A-204ENST00000413716 MIER3Q7Z3K6 550 aa15.21■□□□□ 0.02
CCDC88A-204ENST00000413716 ZEB2O60315 1214 aa15.21■□□□□ 0.02
CCDC88A-204ENST00000413716 AFAP1L2Q8N4X5 818 aa15.2■□□□□ 0.02
CCDC88A-204ENST00000413716 C8orf76Q96K31 380 aa15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms