RNA–Protein interactions for RNA: ENST00000413578.5

LIMS2-210, Transcript of LIM zinc finger domain containing 2, humanhuman

TSL 3

Gene LIMS2, Length 930 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS2-210ENST00000413578 BCORQ6W2J9 1755 aa16.34■□□□□ 0.21
LIMS2-210ENST00000413578 PRAMEF22A3QJZ6 481 aa16.34■□□□□ 0.21
LIMS2-210ENST00000413578 KLRG2A4D1S0 409 aaPredicted RBP16.34■□□□□ 0.21
LIMS2-210ENST00000413578 MASTLQ96GX5 879 aa16.34■□□□□ 0.21
LIMS2-210ENST00000413578 RGL2O15211 777 aa16.33■□□□□ 0.2
LIMS2-210ENST00000413578 POTEIP0CG38 1075 aa16.33■□□□□ 0.2
LIMS2-210ENST00000413578 POTEJP0CG39 1038 aa16.33■□□□□ 0.2
LIMS2-210ENST00000413578 HSPA1AP0DMV8 641 aaKnown RBP16.33■□□□□ 0.2
LIMS2-210ENST00000413578 HSPA1BP0DMV9 641 aaKnown RBP16.33■□□□□ 0.2
LIMS2-210ENST00000413578 PIP4K2AP48426 406 aaPredicted RBP16.33■□□□□ 0.2
LIMS2-210ENST00000413578 ST5P78524 1137 aa16.33■□□□□ 0.2
LIMS2-210ENST00000413578 SOGA3Q5TF21 947 aa16.33■□□□□ 0.2
LIMS2-210ENST00000413578 DDNO94850 711 aaPredicted RBP16.32■□□□□ 0.2
LIMS2-210ENST00000413578 CHADLQ6NUI6 762 aa16.32■□□□□ 0.2
LIMS2-210ENST00000413578 SLX4Q8IY92 1834 aa16.32■□□□□ 0.2
LIMS2-210ENST00000413578 NBPF26B4DH59 902 aa16.31■□□□□ 0.2
LIMS2-210ENST00000413578 SNRPA1P09661 255 aaKnown RBP16.31■□□□□ 0.2
LIMS2-210ENST00000413578 NBPF10Q6P3W6 841 aaKnown RBP16.31■□□□□ 0.2
LIMS2-210ENST00000413578 TNS4Q8IZW8 715 aa16.31■□□□□ 0.2
LIMS2-210ENST00000413578 NBPF15Q8N660 670 aa16.31■□□□□ 0.2
LIMS2-210ENST00000413578 L3MBTL3Q96JM7 780 aaPredicted RBP16.31■□□□□ 0.2
LIMS2-210ENST00000413578 CREBZFQ9NS37 354 aa16.31■□□□□ 0.2
LIMS2-210ENST00000413578 DICER1Q9UPY3 1922 aaKnown RBP16.31■□□□□ 0.2
LIMS2-210ENST00000413578 CCDC88AQ3V6T2 1871 aa16.31■□□□□ 0.2
LIMS2-210ENST00000413578 CNGB1Q14028 1251 aaPredicted RBP16.3■□□□□ 0.2
LIMS2-210ENST00000413578 NPM2Q86SE8 214 aaKnown RBP16.3■□□□□ 0.2
LIMS2-210ENST00000413578 NBPF5PQ86XG9 351 aaPredicted RBP16.3■□□□□ 0.2
LIMS2-210ENST00000413578 ARFGEF2Q9Y6D5 1785 aa16.29■□□□□ 0.2
LIMS2-210ENST00000413578 PASKQ96RG2 1323 aa16.29■□□□□ 0.2
LIMS2-210ENST00000413578 NPR1P16066 1061 aa16.29■□□□□ 0.2
LIMS2-210ENST00000413578 MCM10Q7L590 875 aa16.29■□□□□ 0.2
LIMS2-210ENST00000413578 CFAP53Q96M91 514 aa16.29■□□□□ 0.2
LIMS2-210ENST00000413578 NPHP1O15259 732 aa16.28■□□□□ 0.2
LIMS2-210ENST00000413578 HTATSF1O43719 755 aaKnown RBP16.28■□□□□ 0.2
LIMS2-210ENST00000413578 CCDC93Q567U6 631 aa16.28■□□□□ 0.2
LIMS2-210ENST00000413578 ZNF652Q9Y2D9 606 aa16.28■□□□□ 0.2
LIMS2-210ENST00000413578 SNED1Q8TER0 1413 aa16.28■□□□□ 0.2
LIMS2-210ENST00000413578 FKBP4Q02790 459 aaKnown RBP eCLIP16.27■□□□□ 0.2
LIMS2-210ENST00000413578 TAF1DQ9H5J8 278 aaPredicted RBP16.27■□□□□ 0.2
LIMS2-210ENST00000413578 NUDCQ9Y266 331 aa16.27■□□□□ 0.2
LIMS2-210ENST00000413578 IQCA1LA6NCM1 817 aa16.26■□□□□ 0.19
LIMS2-210ENST00000413578 U2AF1L5P0DN76 240 aaPredicted RBP16.26■□□□□ 0.19
LIMS2-210ENST00000413578 PPP2R1AP30153 589 aa16.26■□□□□ 0.19
LIMS2-210ENST00000413578 U2AF1Q01081 240 aaKnown RBP eCLIP16.26■□□□□ 0.19
LIMS2-210ENST00000413578 DCTN1Q14203 1278 aa16.26■□□□□ 0.19
LIMS2-210ENST00000413578 TPTE2Q6XPS3 522 aa16.26■□□□□ 0.19
LIMS2-210ENST00000413578 LDHDQ86WU2 507 aa16.26■□□□□ 0.19
LIMS2-210ENST00000413578 RTF1Q92541 710 aaKnown RBP16.26■□□□□ 0.19
LIMS2-210ENST00000413578 NIP7Q9Y221 180 aaKnown RBP eCLIP16.26■□□□□ 0.19
LIMS2-210ENST00000413578 CNTNAP1P78357 1384 aa16.26■□□□□ 0.19
LIMS2-210ENST00000413578 ZNF541Q9H0D2 1346 aa16.25■□□□□ 0.19
LIMS2-210ENST00000413578 HLFQ16534 295 aa16.25■□□□□ 0.19
LIMS2-210ENST00000413578 OLFM4Q6UX06 510 aa16.25■□□□□ 0.19
LIMS2-210ENST00000413578 MKRN1Q9UHC7 482 aaKnown RBP16.25■□□□□ 0.19
LIMS2-210ENST00000413578 ITGBL1O95965 494 aaPredicted RBP16.24■□□□□ 0.19
LIMS2-210ENST00000413578 CRY2Q49AN0 593 aa16.24■□□□□ 0.19
LIMS2-210ENST00000413578 ZNF277Q9NRM2 450 aaPredicted RBP16.24■□□□□ 0.19
LIMS2-210ENST00000413578 FZD9O00144 591 aa16.23■□□□□ 0.19
LIMS2-210ENST00000413578 CAPN15O75808 1086 aa16.23■□□□□ 0.19
LIMS2-210ENST00000413578 TAF7Q15545 349 aaPredicted RBP16.23■□□□□ 0.19
LIMS2-210ENST00000413578 RTKN2Q8IZC4 609 aa16.23■□□□□ 0.19
LIMS2-210ENST00000413578 ADAMTSL1Q8N6G6 1762 aa16.23■□□□□ 0.19
LIMS2-210ENST00000413578 ABCC12Q96J65 1359 aa16.22■□□□□ 0.19
LIMS2-210ENST00000413578 SCN4AP35499 1836 aa16.22■□□□□ 0.19
LIMS2-210ENST00000413578 ALDH1B1P30837 517 aa16.21■□□□□ 0.19
LIMS2-210ENST00000413578 PSMD1Q99460 953 aa16.21■□□□□ 0.19
LIMS2-210ENST00000413578 MIS18AQ9NYP9 233 aa16.21■□□□□ 0.19
LIMS2-210ENST00000413578 HACL1Q9UJ83 578 aa16.21■□□□□ 0.19
LIMS2-210ENST00000413578 CACNA1SQ13698 1873 aa16.2■□□□□ 0.18
LIMS2-210ENST00000413578 RIC1Q4ADV7 1423 aa16.2■□□□□ 0.18
LIMS2-210ENST00000413578 ERVV-1B6SEH8 477 aa16.2■□□□□ 0.18
LIMS2-210ENST00000413578 IARSP41252 1262 aaKnown RBP16.2■□□□□ 0.18
LIMS2-210ENST00000413578 SYNE4Q8N205 404 aa16.2■□□□□ 0.18
LIMS2-210ENST00000413578 COL4A5P29400 1685 aa16.19■□□□□ 0.18
LIMS2-210ENST00000413578 IBTKQ9P2D0 1353 aaPredicted RBP16.19■□□□□ 0.18
LIMS2-210ENST00000413578 TMEM88BA6NKF7 163 aa16.19■□□□□ 0.18
LIMS2-210ENST00000413578 FAM177BA6PVY3 158 aa16.19■□□□□ 0.18
LIMS2-210ENST00000413578 FOXN1O15353 648 aa16.19■□□□□ 0.18
LIMS2-210ENST00000413578 EPHX2P34913 555 aa16.19■□□□□ 0.18
LIMS2-210ENST00000413578 RNF123Q5XPI4 1314 aa16.19■□□□□ 0.18
LIMS2-210ENST00000413578 HOXA10P31260 410 aaPredicted RBP16.18■□□□□ 0.18
LIMS2-210ENST00000413578 VEGFBP49765 207 aa16.18■□□□□ 0.18
LIMS2-210ENST00000413578 EIF4A1P60842 406 aaKnown RBP16.18■□□□□ 0.18
LIMS2-210ENST00000413578 NUTM1Q86Y26 1132 aa16.18■□□□□ 0.18
LIMS2-210ENST00000413578 GPC2Q8N158 579 aa16.18■□□□□ 0.18
LIMS2-210ENST00000413578 PLEKHF1Q96S99 279 aa16.18■□□□□ 0.18
LIMS2-210ENST00000413578 LAMB4A4D0S4 1761 aa16.18■□□□□ 0.18
LIMS2-210ENST00000413578 MAP3K15Q6ZN16 1313 aa16.18■□□□□ 0.18
LIMS2-210ENST00000413578 UBN2Q6ZU65 1347 aa16.18■□□□□ 0.18
LIMS2-210ENST00000413578 EAPPQ56P03 285 aaPredicted RBP16.17■□□□□ 0.18
LIMS2-210ENST00000413578 TTLL7Q6ZT98 887 aa16.17■□□□□ 0.18
LIMS2-210ENST00000413578 PNMA8AQ86V59 439 aaPredicted RBP16.17■□□□□ 0.18
LIMS2-210ENST00000413578 PNISRQ8TF01 805 aaKnown RBP16.17■□□□□ 0.18
LIMS2-210ENST00000413578 NYXQ9GZU5 481 aa16.17■□□□□ 0.18
LIMS2-210ENST00000413578 PRDM10Q9NQV6 1147 aa16.17■□□□□ 0.18
LIMS2-210ENST00000413578 RASSF10A6NK89 507 aa16.16■□□□□ 0.18
LIMS2-210ENST00000413578 CC2D2BQ6DHV5 1058 aa16.16■□□□□ 0.18
LIMS2-210ENST00000413578 SLC51AQ86UW1 340 aa16.16■□□□□ 0.18
LIMS2-210ENST00000413578 WBP1LQ9NX94 342 aa16.16■□□□□ 0.18
LIMS2-210ENST00000413578 KDM3BQ7LBC6 1761 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms