RNA–Protein interactions for RNA: ENST00000410093.5

LIMS1-205, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,526 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-205ENST00000410093 MX1P20591 662 aa16.67■□□□□ 0.26
LIMS1-205ENST00000410093 RABEP1Q15276 862 aa16.67■□□□□ 0.26
LIMS1-205ENST00000410093 ERC1Q8IUD2 1116 aa16.67■□□□□ 0.26
LIMS1-205ENST00000410093 TTC5Q8N0Z6 440 aa16.67■□□□□ 0.26
LIMS1-205ENST00000410093 CIZ1Q9ULV3 898 aaPredicted RBP16.67■□□□□ 0.26
LIMS1-205ENST00000410093 PCDH11XQ9BZA7 1347 aa16.67■□□□□ 0.26
LIMS1-205ENST00000410093 PCDH11YQ9BZA8 1340 aa16.67■□□□□ 0.26
LIMS1-205ENST00000410093 DEFB132Q7Z7B7 95 aa16.66■□□□□ 0.26
LIMS1-205ENST00000410093 C16orf71Q8IYS4 520 aaPredicted RBP16.66■□□□□ 0.26
LIMS1-205ENST00000410093 FMNL2Q96PY5 1086 aa16.66■□□□□ 0.26
LIMS1-205ENST00000410093 CHMP5Q9NZZ3 219 aa16.66■□□□□ 0.26
LIMS1-205ENST00000410093 C5P01031 1676 aa16.66■□□□□ 0.26
LIMS1-205ENST00000410093 THSD7AQ9UPZ6 1657 aa16.66■□□□□ 0.26
LIMS1-205ENST00000410093 ERVV-2B6SEH9 535 aa16.65■□□□□ 0.26
LIMS1-205ENST00000410093 ERC2O15083 957 aa16.65■□□□□ 0.26
LIMS1-205ENST00000410093 SMARCA5O60264 1052 aaPredicted RBP16.65■□□□□ 0.26
LIMS1-205ENST00000410093 PPP1R42Q7Z4L9 355 aa16.65■□□□□ 0.26
LIMS1-205ENST00000410093 CDCA7Q9BWT1 371 aaPredicted RBP16.65■□□□□ 0.26
LIMS1-205ENST00000410093 EXOC6BQ9Y2D4 811 aa16.65■□□□□ 0.26
LIMS1-205ENST00000410093 MAP3K2Q9Y2U5 619 aa16.65■□□□□ 0.26
LIMS1-205ENST00000410093 NEXNQ0ZGT2 675 aa16.65■□□□□ 0.26
LIMS1-205ENST00000410093 CARD10Q9BWT7 1032 aa16.65■□□□□ 0.26
LIMS1-205ENST00000410093 USP26Q9BXU7 913 aa16.65■□□□□ 0.26
LIMS1-205ENST00000410093 C9orf78Q9NZ63 289 aaPredicted RBP16.65■□□□□ 0.26
LIMS1-205ENST00000410093 SRGAP3O43295 1099 aa16.64■□□□□ 0.25
LIMS1-205ENST00000410093 NKX1-1Q15270 411 aaPredicted RBP16.64■□□□□ 0.25
LIMS1-205ENST00000410093 DDB1Q16531 1140 aa16.64■□□□□ 0.25
LIMS1-205ENST00000410093 NFATC2IPQ8NCF5 419 aa16.64■□□□□ 0.25
LIMS1-205ENST00000410093 AK9Q5TCS8 1911 aa16.63■□□□□ 0.25
LIMS1-205ENST00000410093 SURF6O75683 361 aaKnown RBP16.63■□□□□ 0.25
LIMS1-205ENST00000410093 DEKP35659 375 aaKnown RBP16.63■□□□□ 0.25
LIMS1-205ENST00000410093 COL15A1P39059 1388 aa16.63■□□□□ 0.25
LIMS1-205ENST00000410093 CABP4P57796 275 aa16.63■□□□□ 0.25
LIMS1-205ENST00000410093 UBR2Q8IWV8 1755 aa16.63■□□□□ 0.25
LIMS1-205ENST00000410093 KIF2CQ99661 725 aa16.63■□□□□ 0.25
LIMS1-205ENST00000410093 TTC41PQ6P2S7 1318 aa16.62■□□□□ 0.25
LIMS1-205ENST00000410093 USP42Q9H9J4 1324 aaKnown RBP16.62■□□□□ 0.25
LIMS1-205ENST00000410093 APBB1O00213 710 aa16.62■□□□□ 0.25
LIMS1-205ENST00000410093 CYP27B1O15528 508 aa16.62■□□□□ 0.25
LIMS1-205ENST00000410093 TRIM37O94972 964 aa16.62■□□□□ 0.25
LIMS1-205ENST00000410093 ZCRB1Q8TBF4 217 aaKnown RBP16.62■□□□□ 0.25
LIMS1-205ENST00000410093 RHPN1Q8TCX5 695 aa16.62■□□□□ 0.25
LIMS1-205ENST00000410093 OTUD7AQ8TE49 926 aaPredicted RBP16.62■□□□□ 0.25
LIMS1-205ENST00000410093 GRM8O00222 908 aa16.61■□□□□ 0.25
LIMS1-205ENST00000410093 NBPF7P0C2Y1 421 aaPredicted RBP16.61■□□□□ 0.25
LIMS1-205ENST00000410093 PDIA6Q15084 440 aa16.61■□□□□ 0.25
LIMS1-205ENST00000410093 PAPPAQ13219 1627 aa16.61■□□□□ 0.25
LIMS1-205ENST00000410093 K7ELQ4 463 aaPredicted RBP16.6■□□□□ 0.25
LIMS1-205ENST00000410093 MCCP23508 829 aa16.6■□□□□ 0.25
LIMS1-205ENST00000410093 RIC3Q7Z5B4 369 aa16.6■□□□□ 0.25
LIMS1-205ENST00000410093 GPATCH3Q96I76 525 aa16.6■□□□□ 0.25
LIMS1-205ENST00000410093 EXOC5O00471 708 aa16.6■□□□□ 0.25
LIMS1-205ENST00000410093 APBA3O96018 575 aa16.6■□□□□ 0.25
LIMS1-205ENST00000410093 IL2RBP14784 551 aa16.6■□□□□ 0.25
LIMS1-205ENST00000410093 PTMSP20962 102 aa16.6■□□□□ 0.25
LIMS1-205ENST00000410093 ANAPC15P60006 121 aa16.6■□□□□ 0.25
LIMS1-205ENST00000410093 EN1Q05925 392 aaPredicted RBP16.6■□□□□ 0.25
LIMS1-205ENST00000410093 METTL22Q9BUU2 404 aaPredicted RBP16.6■□□□□ 0.25
LIMS1-205ENST00000410093 SLKQ9H2G2 1235 aaPredicted RBP16.6■□□□□ 0.25
LIMS1-205ENST00000410093 ST18O60284 1047 aa16.59■□□□□ 0.25
LIMS1-205ENST00000410093 ZNF496Q96IT1 587 aaPredicted RBP16.59■□□□□ 0.25
LIMS1-205ENST00000410093 MCM2P49736 904 aa16.58■□□□□ 0.24
LIMS1-205ENST00000410093 PROSER3Q2NL68 480 aa16.58■□□□□ 0.24
LIMS1-205ENST00000410093 CLASRPQ8N2M8 674 aaKnown RBP16.58■□□□□ 0.24
LIMS1-205ENST00000410093 IL17RAQ96F46 866 aa16.58■□□□□ 0.24
LIMS1-205ENST00000410093 AFDNP55196 1824 aaKnown RBP16.57■□□□□ 0.24
LIMS1-205ENST00000410093 DDIT3P35638 169 aa16.57■□□□□ 0.24
LIMS1-205ENST00000410093 ANKRD13DQ6ZTN6 518 aa16.57■□□□□ 0.24
LIMS1-205ENST00000410093 ARFGEF2Q9Y6D5 1785 aa16.57■□□□□ 0.24
LIMS1-205ENST00000410093 SHANK3Q9BYB0 1731 aa16.57■□□□□ 0.24
LIMS1-205ENST00000410093 FRAT2O75474 233 aaPredicted RBP16.56■□□□□ 0.24
LIMS1-205ENST00000410093 GLRX3O76003 335 aaKnown RBP16.56■□□□□ 0.24
LIMS1-205ENST00000410093 ANXA1P04083 346 aa16.56■□□□□ 0.24
LIMS1-205ENST00000410093 SLC39A6Q13433 755 aa16.56■□□□□ 0.24
LIMS1-205ENST00000410093 CNTROBQ8N137 903 aa16.56■□□□□ 0.24
LIMS1-205ENST00000410093 ESYT1Q9BSJ8 1104 aa16.56■□□□□ 0.24
LIMS1-205ENST00000410093 TRIM6-TRIM34B2RNG4 842 aa16.55■□□□□ 0.24
LIMS1-205ENST00000410093 HSP90AA1P07900 732 aaKnown RBP16.55■□□□□ 0.24
LIMS1-205ENST00000410093 CHMLP26374 656 aa16.55■□□□□ 0.24
LIMS1-205ENST00000410093 OS9Q13438 667 aaPredicted RBP16.55■□□□□ 0.24
LIMS1-205ENST00000410093 GSE1Q14687 1217 aa16.55■□□□□ 0.24
LIMS1-205ENST00000410093 NEURL1BA8MQ27 555 aa16.55■□□□□ 0.24
LIMS1-205ENST00000410093 GCKRQ14397 625 aa16.55■□□□□ 0.24
LIMS1-205ENST00000410093 COPS6Q7L5N1 327 aa16.55■□□□□ 0.24
LIMS1-205ENST00000410093 LRP10Q7Z4F1 713 aa16.55■□□□□ 0.24
LIMS1-205ENST00000410093 PLBD2Q8NHP8 589 aa16.55■□□□□ 0.24
LIMS1-205ENST00000410093 XAGE3Q8WTP9 111 aa16.55■□□□□ 0.24
LIMS1-205ENST00000410093 PRAMEF22A3QJZ6 481 aa16.54■□□□□ 0.24
LIMS1-205ENST00000410093 TEX13AQ9BXU3 409 aaPredicted RBP16.54■□□□□ 0.24
LIMS1-205ENST00000410093 CWC22Q9HCG8 908 aaKnown RBP16.54■□□□□ 0.24
LIMS1-205ENST00000410093 TNS2Q63HR2 1409 aa16.53■□□□□ 0.24
LIMS1-205ENST00000410093 DDX11L8A8MPP1 907 aa16.53■□□□□ 0.24
LIMS1-205ENST00000410093 G3BP1Q13283 466 aaKnown RBP eCLIP16.53■□□□□ 0.24
LIMS1-205ENST00000410093 EZH2Q15910 746 aaKnown RBP16.53■□□□□ 0.24
LIMS1-205ENST00000410093 PI4K2BQ8TCG2 481 aa16.53■□□□□ 0.24
LIMS1-205ENST00000410093 RUFY2Q8WXA3 655 aa16.53■□□□□ 0.24
LIMS1-205ENST00000410093 DISP2A7MBM2 1401 aa16.52■□□□□ 0.24
LIMS1-205ENST00000410093 HIP1O00291 1037 aa16.52■□□□□ 0.24
LIMS1-205ENST00000410093 IGKV5-2P06315 115 aa16.52■□□□□ 0.24
LIMS1-205ENST00000410093 AIMP1Q12904 312 aaKnown RBP16.52■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms