RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 ERBB4Q15303 1308 aa16.17■□□□□ 0.18
VPS54-203ENST00000409558 KSR2Q6VAB6 950 aa16.17■□□□□ 0.18
VPS54-203ENST00000409558 PI4K2BQ8TCG2 481 aa16.17■□□□□ 0.18
VPS54-203ENST00000409558 ZBTB3Q9H5J0 574 aa16.17■□□□□ 0.18
VPS54-203ENST00000409558 KIF24Q5T7B8 1368 aa16.17■□□□□ 0.18
VPS54-203ENST00000409558 EAF2Q96CJ1 260 aaPredicted RBP16.16■□□□□ 0.18
VPS54-203ENST00000409558 GRM8O00222 908 aa16.16■□□□□ 0.18
VPS54-203ENST00000409558 LARGE1O95461 756 aa16.16■□□□□ 0.18
VPS54-203ENST00000409558 EPHA10Q5JZY3 1008 aa16.16■□□□□ 0.18
VPS54-203ENST00000409558 RBSNQ9H1K0 784 aa16.16■□□□□ 0.18
VPS54-203ENST00000409558 TMEM63CQ9P1W3 806 aa16.16■□□□□ 0.18
VPS54-203ENST00000409558 FGD1P98174 961 aa16.15■□□□□ 0.18
VPS54-203ENST00000409558 ZNF790Q6PG37 636 aa16.15■□□□□ 0.18
VPS54-203ENST00000409558 KDM4AO75164 1064 aa16.15■□□□□ 0.18
VPS54-203ENST00000409558 KLHL40Q2TBA0 621 aa16.15■□□□□ 0.18
VPS54-203ENST00000409558 SNX14Q9Y5W7 946 aa16.15■□□□□ 0.18
VPS54-203ENST00000409558 ADCY9O60503 1353 aa16.15■□□□□ 0.18
VPS54-203ENST00000409558 DDX58O95786 925 aaKnown RBP16.15■□□□□ 0.18
VPS54-203ENST00000409558 PTMAP06454 111 aaKnown RBP16.15■□□□□ 0.18
VPS54-203ENST00000409558 CABP4P57796 275 aa16.15■□□□□ 0.18
VPS54-203ENST00000409558 CCDC129Q6ZRS4 1044 aa16.15■□□□□ 0.18
VPS54-203ENST00000409558 OSBPL3Q9H4L5 887 aa16.15■□□□□ 0.18
VPS54-203ENST00000409558 CNPY2Q9Y2B0 182 aa16.15■□□□□ 0.18
VPS54-203ENST00000409558 AMOTQ4VCS5 1084 aa16.15■□□□□ 0.18
VPS54-203ENST00000409558 TOM1L2Q6ZVM7 507 aa16.15■□□□□ 0.18
VPS54-203ENST00000409558 SMC3Q9UQE7 1217 aa16.15■□□□□ 0.18
VPS54-203ENST00000409558 ESPNB1AK53 854 aa16.14■□□□□ 0.17
VPS54-203ENST00000409558 ECHDC1Q9NTX5 307 aa16.14■□□□□ 0.17
VPS54-203ENST00000409558 SYTL4Q96C24 671 aaPredicted RBP16.14■□□□□ 0.17
VPS54-203ENST00000409558 TAF6LQ9Y6J9 622 aa16.14■□□□□ 0.17
VPS54-203ENST00000409558 PXDNQ92626 1479 aa16.13■□□□□ 0.17
VPS54-203ENST00000409558 REREQ9P2R6 1566 aa16.13■□□□□ 0.17
VPS54-203ENST00000409558 A0A087WZG4 1122 aa16.13■□□□□ 0.17
VPS54-203ENST00000409558 SGSM2O43147 1006 aa16.13■□□□□ 0.17
VPS54-203ENST00000409558 DDX46Q7L014 1031 aaKnown RBP16.13■□□□□ 0.17
VPS54-203ENST00000409558 GPATCH3Q96I76 525 aa16.13■□□□□ 0.17
VPS54-203ENST00000409558 CWC22Q9HCG8 908 aaKnown RBP16.13■□□□□ 0.17
VPS54-203ENST00000409558 GLRX3O76003 335 aaKnown RBP16.13■□□□□ 0.17
VPS54-203ENST00000409558 NMIQ13287 307 aaPredicted RBP16.13■□□□□ 0.17
VPS54-203ENST00000409558 SEC62Q99442 399 aaKnown RBP16.13■□□□□ 0.17
VPS54-203ENST00000409558 NCOA3Q9Y6Q9 1424 aa16.13■□□□□ 0.17
VPS54-203ENST00000409558 FAM177BA6PVY3 158 aa16.13■□□□□ 0.17
VPS54-203ENST00000409558 RAB11FIP3O75154 756 aa16.13■□□□□ 0.17
VPS54-203ENST00000409558 NRKQ7Z2Y5 1582 aa16.12■□□□□ 0.17
VPS54-203ENST00000409558 CEBPZQ03701 1054 aaKnown RBP16.12■□□□□ 0.17
VPS54-203ENST00000409558 PRDM11Q9NQV5 511 aa16.12■□□□□ 0.17
VPS54-203ENST00000409558 AKAP12Q02952 1782 aa16.12■□□□□ 0.17
VPS54-203ENST00000409558 SASH1O94885 1247 aa16.12■□□□□ 0.17
VPS54-203ENST00000409558 IGKV5-2P06315 115 aa16.12■□□□□ 0.17
VPS54-203ENST00000409558 SALL3Q9BXA9 1300 aa16.12■□□□□ 0.17
VPS54-203ENST00000409558 A1BGP04217 495 aa16.11■□□□□ 0.17
VPS54-203ENST00000409558 PDRG1Q9NUG6 133 aa16.11■□□□□ 0.17
VPS54-203ENST00000409558 HSP90AB3PQ58FF7 597 aa16.11■□□□□ 0.17
VPS54-203ENST00000409558 ANKRD13DQ6ZTN6 518 aa16.11■□□□□ 0.17
VPS54-203ENST00000409558 USP48Q86UV5 1035 aa16.11■□□□□ 0.17
VPS54-203ENST00000409558 ZNF594Q96JF6 807 aaPredicted RBP16.11■□□□□ 0.17
VPS54-203ENST00000409558 HSP90B1P14625 803 aaKnown RBP16.11■□□□□ 0.17
VPS54-203ENST00000409558 PIK3C2AO00443 1686 aa16.11■□□□□ 0.17
VPS54-203ENST00000409558 DDX11Q96FC9 970 aa16.1■□□□□ 0.17
VPS54-203ENST00000409558 SNRKQ9NRH2 765 aa16.1■□□□□ 0.17
VPS54-203ENST00000409558 A0A0D9SFI3 127 aa16.1■□□□□ 0.17
VPS54-203ENST00000409558 HSP90AB4PQ58FF6 505 aa16.1■□□□□ 0.17
VPS54-203ENST00000409558 TFCP2Q12800 502 aa16.1■□□□□ 0.17
VPS54-203ENST00000409558 POLA2Q14181 598 aa16.1■□□□□ 0.17
VPS54-203ENST00000409558 RUFY3Q7L099 469 aa16.1■□□□□ 0.17
VPS54-203ENST00000409558 RBM8AQ9Y5S9 174 aaKnown RBP16.1■□□□□ 0.17
VPS54-203ENST00000409558 LINS1Q8NG48 757 aa16.1■□□□□ 0.17
VPS54-203ENST00000409558 KAZALD1Q96I82 304 aa16.1■□□□□ 0.17
VPS54-203ENST00000409558 HYPKQ9NX55 129 aa16.1■□□□□ 0.17
VPS54-203ENST00000409558 STAP2Q9UGK3 403 aa16.1■□□□□ 0.17
VPS54-203ENST00000409558 TIMM10P62072 90 aa16.09■□□□□ 0.17
VPS54-203ENST00000409558 ERBB3P21860 1342 aa16.09■□□□□ 0.17
VPS54-203ENST00000409558 MSNP26038 577 aaKnown RBP16.09■□□□□ 0.17
VPS54-203ENST00000409558 HSPA4P34932 840 aa16.09■□□□□ 0.17
VPS54-203ENST00000409558 CHST3Q7LGC8 479 aa16.09■□□□□ 0.17
VPS54-203ENST00000409558 C19orf44Q9H6X5 657 aa16.09■□□□□ 0.17
VPS54-203ENST00000409558 DDX21Q9NR30 783 aaKnown RBP eCLIP16.09■□□□□ 0.17
VPS54-203ENST00000409558 TFIP11Q9UBB9 837 aaKnown RBP16.09■□□□□ 0.17
VPS54-203ENST00000409558 ZKSCAN1P17029 563 aaPredicted RBP16.09■□□□□ 0.17
VPS54-203ENST00000409558 RAB11FIP4Q86YS3 637 aa16.09■□□□□ 0.17
VPS54-203ENST00000409558 LSG1Q9H089 658 aaKnown RBP16.09■□□□□ 0.17
VPS54-203ENST00000409558 GJB2P29033 226 aa16.08■□□□□ 0.17
VPS54-203ENST00000409558 LMBR1LQ6UX01 489 aa16.08■□□□□ 0.17
VPS54-203ENST00000409558 ZNF830Q96NB3 372 aaPredicted RBP16.08■□□□□ 0.17
VPS54-203ENST00000409558 FBXW7Q969H0 707 aa16.08■□□□□ 0.16
VPS54-203ENST00000409558 BCL11BQ9C0K0 894 aaPredicted RBP16.08■□□□□ 0.16
VPS54-203ENST00000409558 CYP27B1O15528 508 aa16.08■□□□□ 0.16
VPS54-203ENST00000409558 TTLL7Q6ZT98 887 aa16.08■□□□□ 0.16
VPS54-203ENST00000409558 ZNF589Q86UQ0 364 aaPredicted RBP16.08■□□□□ 0.16
VPS54-203ENST00000409558 SLC52A2Q9HAB3 445 aa16.08■□□□□ 0.16
VPS54-203ENST00000409558 EVA1CP58658 441 aa16.08■□□□□ 0.16
VPS54-203ENST00000409558 DNM1Q05193 864 aaKnown RBP16.08■□□□□ 0.16
VPS54-203ENST00000409558 CAMK4Q16566 473 aa16.08■□□□□ 0.16
VPS54-203ENST00000409558 RUFY2Q8WXA3 655 aa16.08■□□□□ 0.16
VPS54-203ENST00000409558 DBNDD2Q9BQY9 259 aa16.08■□□□□ 0.16
VPS54-203ENST00000409558 CYP46A1Q9Y6A2 500 aa16.07■□□□□ 0.16
VPS54-203ENST00000409558 NPHP3Q7Z494 1330 aa16.07■□□□□ 0.16
VPS54-203ENST00000409558 SYT1P21579 422 aa16.07■□□□□ 0.16
VPS54-203ENST00000409558 LARP1Q6PKG0 1096 aaKnown RBP16.07■□□□□ 0.16
VPS54-203ENST00000409558 RAD50Q92878 1312 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 96.7 ms