RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 DLGAP5Q15398 846 aa8.66□□□□□ -1.02
SCN9A-202ENST00000409435 DDX19BQ9UMR2 479 aa8.65□□□□□ -1.02
SCN9A-202ENST00000409435 KDM5CP41229 1560 aa8.65□□□□□ -1.02
SCN9A-202ENST00000409435 MATR3P43243 847 aaKnown RBP eCLIP8.65□□□□□ -1.021e-6■■■□□ 16.5
SCN9A-202ENST00000409435 CARD10Q9BWT7 1032 aa8.65□□□□□ -1.02
SCN9A-202ENST00000409435 INCENPQ9NQS7 918 aa8.65□□□□□ -1.02
SCN9A-202ENST00000409435 FLT4P35916 1363 aa8.65□□□□□ -1.02
SCN9A-202ENST00000409435 ECE1P42892 770 aa8.65□□□□□ -1.02
SCN9A-202ENST00000409435 VPS72Q15906 364 aa8.65□□□□□ -1.02
SCN9A-202ENST00000409435 PPP4R3BQ5MIZ7 849 aa8.65□□□□□ -1.02
SCN9A-202ENST00000409435 RCAN3Q9UKA8 241 aa8.65□□□□□ -1.02
SCN9A-202ENST00000409435 HECW2Q9P2P5 1572 aa8.65□□□□□ -1.03
SCN9A-202ENST00000409435 HOXC9P31274 260 aa8.65□□□□□ -1.03
SCN9A-202ENST00000409435 PICALMQ13492 652 aa8.65□□□□□ -1.03
SCN9A-202ENST00000409435 ANO2Q9NQ90 1003 aa8.65□□□□□ -1.03
SCN9A-202ENST00000409435 MAST3O60307 1309 aa8.64□□□□□ -1.03
SCN9A-202ENST00000409435 SKOR2Q2VWA4 1001 aaPredicted RBP8.64□□□□□ -1.03
SCN9A-202ENST00000409435 TAOK3Q9H2K8 898 aa8.64□□□□□ -1.03
SCN9A-202ENST00000409435 KIAA0232Q92628 1395 aa8.64□□□□□ -1.03
SCN9A-202ENST00000409435 ATP5J2-PTCD1G3V325 749 aa8.64□□□□□ -1.03
SCN9A-202ENST00000409435 ZRSR2Q15696 482 aaKnown RBP8.64□□□□□ -1.03
SCN9A-202ENST00000409435 RUFY1Q96T51 708 aa8.64□□□□□ -1.03
SCN9A-202ENST00000409435 PIK3C2GO75747 1445 aa8.64□□□□□ -1.03
SCN9A-202ENST00000409435 DUSP27Q5VZP5 1158 aa8.64□□□□□ -1.03
SCN9A-202ENST00000409435 RTKN2Q8IZC4 609 aa8.64□□□□□ -1.03
SCN9A-202ENST00000409435 XPO5Q9HAV4 1204 aaKnown RBP eCLIP8.64□□□□□ -1.03
SCN9A-202ENST00000409435 ABCC1P33527 1531 aa8.64□□□□□ -1.03
SCN9A-202ENST00000409435 IRX3P78415 501 aaPredicted RBP8.64□□□□□ -1.03
SCN9A-202ENST00000409435 LEKR1Q6ZMV7 388 aa8.64□□□□□ -1.03
SCN9A-202ENST00000409435 USP48Q86UV5 1035 aa8.64□□□□□ -1.03
SCN9A-202ENST00000409435 HOXD10P28358 340 aa8.64□□□□□ -1.03
SCN9A-202ENST00000409435 CNGA1P29973 690 aa8.64□□□□□ -1.03
SCN9A-202ENST00000409435 HSP90AB2PQ58FF8 381 aa8.64□□□□□ -1.03
SCN9A-202ENST00000409435 RRP9O43818 475 aaKnown RBP8.63□□□□□ -1.03
SCN9A-202ENST00000409435 TXNRD1Q16881 649 aa8.63□□□□□ -1.03
SCN9A-202ENST00000409435 ANKRD13DQ6ZTN6 518 aa8.63□□□□□ -1.03
SCN9A-202ENST00000409435 DEFB132Q7Z7B7 95 aa8.63□□□□□ -1.03
SCN9A-202ENST00000409435 CDK5RAP3Q96JB5 506 aa8.63□□□□□ -1.03
SCN9A-202ENST00000409435 SHANK2Q9UPX8 1470 aa8.63□□□□□ -1.03
SCN9A-202ENST00000409435 KCNQ2O43526 872 aa8.63□□□□□ -1.03
SCN9A-202ENST00000409435 MYCP01106 439 aaPredicted RBP8.63□□□□□ -1.03
SCN9A-202ENST00000409435 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.63□□□□□ -1.03
SCN9A-202ENST00000409435 HIP1O00291 1037 aa8.63□□□□□ -1.03
SCN9A-202ENST00000409435 DZIP1LQ8IYY4 767 aaKnown RBP8.63□□□□□ -1.03
SCN9A-202ENST00000409435 NBPF3Q9H094 633 aa8.63□□□□□ -1.03
SCN9A-202ENST00000409435 MLH3Q9UHC1 1453 aa8.63□□□□□ -1.03
SCN9A-202ENST00000409435 DCAF15Q66K64 600 aa8.63□□□□□ -1.03
SCN9A-202ENST00000409435 CNTROBQ8N137 903 aa8.63□□□□□ -1.03
SCN9A-202ENST00000409435 UBAC1Q9BSL1 405 aa8.63□□□□□ -1.03
SCN9A-202ENST00000409435 MYO5CQ9NQX4 1742 aa8.62□□□□□ -1.03
SCN9A-202ENST00000409435 MMP10P09238 476 aa8.62□□□□□ -1.03
SCN9A-202ENST00000409435 PPP2R1AP30153 589 aa8.62□□□□□ -1.03
SCN9A-202ENST00000409435 GIMAP7Q8NHV1 300 aa8.62□□□□□ -1.03
SCN9A-202ENST00000409435 SH2D4AQ9H788 454 aa8.62□□□□□ -1.03
SCN9A-202ENST00000409435 SEC63Q9UGP8 760 aaKnown RBP8.62□□□□□ -1.03
SCN9A-202ENST00000409435 BMS1Q14692 1282 aaKnown RBP8.62□□□□□ -1.03
SCN9A-202ENST00000409435 EZH2Q15910 746 aaKnown RBP8.62□□□□□ -1.03
SCN9A-202ENST00000409435 KRT18P05783 430 aaKnown RBP8.62□□□□□ -1.03
SCN9A-202ENST00000409435 PLCG2P16885 1265 aa8.62□□□□□ -1.03
SCN9A-202ENST00000409435 MVPQ14764 893 aaKnown RBP8.62□□□□□ -1.03
SCN9A-202ENST00000409435 TPD52L1Q16890 204 aaPredicted RBP8.62□□□□□ -1.03
SCN9A-202ENST00000409435 LOC102724428A0A0B4J2F2 783 aa8.61□□□□□ -1.03
SCN9A-202ENST00000409435 IRS4O14654 1257 aaPredicted RBP8.61□□□□□ -1.03
SCN9A-202ENST00000409435 SIK1P57059 783 aa8.61□□□□□ -1.03
SCN9A-202ENST00000409435 SUPT20HL1Q3ZLR7 823 aa8.61□□□□□ -1.03
SCN9A-202ENST00000409435 ZNF592Q92610 1267 aa8.61□□□□□ -1.03
SCN9A-202ENST00000409435 CCDC69A6NI79 296 aa8.61□□□□□ -1.03
SCN9A-202ENST00000409435 ERVV-2B6SEH9 535 aa8.61□□□□□ -1.03
SCN9A-202ENST00000409435 SOCS7O14512 581 aa8.61□□□□□ -1.03
SCN9A-202ENST00000409435 CC2D2BQ6DHV5 1058 aa8.61□□□□□ -1.03
SCN9A-202ENST00000409435 UBE2Q2Q8WVN8 375 aa8.61□□□□□ -1.03
SCN9A-202ENST00000409435 MCTP1Q6DN14 999 aa8.61□□□□□ -1.03
SCN9A-202ENST00000409435 SLC16A10Q8TF71 515 aa8.61□□□□□ -1.03
SCN9A-202ENST00000409435 MINDY4BA8MYZ0 360 aa8.61□□□□□ -1.03
SCN9A-202ENST00000409435 SERPINB2P05120 415 aa8.61□□□□□ -1.03
SCN9A-202ENST00000409435 AEBP1Q8IUX7 1158 aa8.61□□□□□ -1.03
SCN9A-202ENST00000409435 CCDC24Q8N4L8 307 aa8.61□□□□□ -1.03
SCN9A-202ENST00000409435 AS3MTQ9HBK9 375 aa8.61□□□□□ -1.03
SCN9A-202ENST00000409435 RIMS1Q86UR5 1692 aaKnown RBP8.6□□□□□ -1.03
SCN9A-202ENST00000409435 TRAF1Q13077 416 aa8.6□□□□□ -1.03
SCN9A-202ENST00000409435 ERCC4Q92889 916 aaPredicted RBP8.6□□□□□ -1.03
SCN9A-202ENST00000409435 SLC10A4Q96EP9 437 aa8.6□□□□□ -1.03
SCN9A-202ENST00000409435 ADGRL3Q9HAR2 1447 aa8.6□□□□□ -1.03
SCN9A-202ENST00000409435 PES1O00541 588 aaKnown RBP8.6□□□□□ -1.03
SCN9A-202ENST00000409435 SKIV2LQ15477 1246 aaKnown RBP8.6□□□□□ -1.03
SCN9A-202ENST00000409435 TSR1Q2NL82 804 aaKnown RBP8.6□□□□□ -1.03
SCN9A-202ENST00000409435 SPATA31A3Q5VYP0 1347 aa8.6□□□□□ -1.03
SCN9A-202ENST00000409435 CRNKL1Q9BZJ0 848 aaKnown RBP8.6□□□□□ -1.03
SCN9A-202ENST00000409435 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP8.6□□□□□ -1.03
SCN9A-202ENST00000409435 ERCC6L2Q5T890 1561 aa8.6□□□□□ -1.03
SCN9A-202ENST00000409435 NSD2O96028 1365 aa8.6□□□□□ -1.03
SCN9A-202ENST00000409435 AACSQ86V21 672 aa8.6□□□□□ -1.03
SCN9A-202ENST00000409435 NUP133Q8WUM0 1156 aa8.6□□□□□ -1.03
SCN9A-202ENST00000409435 MAP3K2Q9Y2U5 619 aa8.6□□□□□ -1.03
SCN9A-202ENST00000409435 CAMSAP1Q5T5Y3 1602 aa8.59□□□□□ -1.03
SCN9A-202ENST00000409435 SRGAP3O43295 1099 aa8.59□□□□□ -1.03
SCN9A-202ENST00000409435 FMNL1O95466 1100 aaPredicted RBP8.59□□□□□ -1.03
SCN9A-202ENST00000409435 USPL1Q5W0Q7 1092 aa8.59□□□□□ -1.03
SCN9A-202ENST00000409435 GADL1Q6ZQY3 521 aa8.59□□□□□ -1.03
SCN9A-202ENST00000409435 DNAAF4Q8WXU2 420 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms