RNA–Protein interactions for RNA: ENST00000404354.3

SMC1B-202, Transcript of structural maintenance of chromosomes 1B, humanhuman

TSL 1 (best) BASIC

Gene SMC1B, Length 3,636 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1B-202ENST00000404354 CBX8Q9HC52 389 aa11.4□□□□□ -0.59
SMC1B-202ENST00000404354 TPCN1Q9ULQ1 816 aa11.4□□□□□ -0.59
SMC1B-202ENST00000404354 NDUFB9Q9Y6M9 179 aa11.4□□□□□ -0.59
SMC1B-202ENST00000404354 DLG5Q8TDM6 1919 aa11.39□□□□□ -0.59
SMC1B-202ENST00000404354 ERICH4A6NGS2 130 aa11.39□□□□□ -0.59
SMC1B-202ENST00000404354 RAB11FIP3O75154 756 aa11.39□□□□□ -0.59
SMC1B-202ENST00000404354 NCBP1Q09161 790 aaKnown RBP11.39□□□□□ -0.59
SMC1B-202ENST00000404354 TRERF1Q96PN7 1200 aa11.39□□□□□ -0.59
SMC1B-202ENST00000404354 EYA1Q99502 592 aa11.39□□□□□ -0.59
SMC1B-202ENST00000404354 NAP1L2Q9ULW6 460 aaPredicted RBP11.39□□□□□ -0.59
SMC1B-202ENST00000404354 CYP46A1Q9Y6A2 500 aa11.39□□□□□ -0.59
SMC1B-202ENST00000404354 MRVI1Q9Y6F6 885 aa11.39□□□□□ -0.59
SMC1B-202ENST00000404354 NEURL4Q96JN8 1562 aa11.39□□□□□ -0.59
SMC1B-202ENST00000404354 LETM1O95202 739 aaPredicted RBP11.39□□□□□ -0.59
SMC1B-202ENST00000404354 ST3GAL1Q11201 340 aa11.39□□□□□ -0.59
SMC1B-202ENST00000404354 LRRC2Q9BYS8 371 aa11.39□□□□□ -0.59
SMC1B-202ENST00000404354 CCDC8Q9H0W5 538 aaPredicted RBP11.39□□□□□ -0.59
SMC1B-202ENST00000404354 FRMPD1Q5SYB0 1578 aa11.39□□□□□ -0.59
SMC1B-202ENST00000404354 YEATS2Q9ULM3 1422 aa11.39□□□□□ -0.59
SMC1B-202ENST00000404354 METP08581 1390 aa11.38□□□□□ -0.59
SMC1B-202ENST00000404354 TTC21BQ7Z4L5 1316 aa11.38□□□□□ -0.59
SMC1B-202ENST00000404354 PI4KAP2A4QPH2 592 aa11.38□□□□□ -0.59
SMC1B-202ENST00000404354 USP27XA6NNY8 438 aa11.38□□□□□ -0.59
SMC1B-202ENST00000404354 PI4KAP1Q8N8J0 262 aa11.38□□□□□ -0.59
SMC1B-202ENST00000404354 STAP2Q9UGK3 403 aa11.38□□□□□ -0.59
SMC1B-202ENST00000404354 KIAA0232Q92628 1395 aa11.38□□□□□ -0.59
SMC1B-202ENST00000404354 CHGBP05060 677 aa11.38□□□□□ -0.59
SMC1B-202ENST00000404354 GTF2F1P35269 517 aaKnown RBP eCLIP11.38□□□□□ -0.59
SMC1B-202ENST00000404354 CCDC144BQ3MJ40 725 aa11.38□□□□□ -0.59
SMC1B-202ENST00000404354 LARP1Q6PKG0 1096 aaKnown RBP11.38□□□□□ -0.59
SMC1B-202ENST00000404354 CCDC144CPQ8IYA2 1237 aa11.38□□□□□ -0.59
SMC1B-202ENST00000404354 FAM200AQ8TCP9 573 aa11.38□□□□□ -0.59
SMC1B-202ENST00000404354 CACTINQ8WUQ7 758 aaKnown RBP11.38□□□□□ -0.59
SMC1B-202ENST00000404354 EDC3Q96F86 508 aaKnown RBP11.38□□□□□ -0.59
SMC1B-202ENST00000404354 SPATA32Q96LK8 384 aa11.38□□□□□ -0.59
SMC1B-202ENST00000404354 LMTK2Q8IWU2 1503 aa11.38□□□□□ -0.59
SMC1B-202ENST00000404354 NR1I2O75469 434 aa11.37□□□□□ -0.59
SMC1B-202ENST00000404354 KRT85P78386 507 aa11.37□□□□□ -0.59
SMC1B-202ENST00000404354 KCNQ3O43525 872 aa11.37□□□□□ -0.59
SMC1B-202ENST00000404354 ZNF165P49910 485 aa11.37□□□□□ -0.59
SMC1B-202ENST00000404354 FTOQ9C0B1 505 aaKnown RBP eCLIP11.37□□□□□ -0.59
SMC1B-202ENST00000404354 ST7Q9NRC1 585 aa11.37□□□□□ -0.59
SMC1B-202ENST00000404354 CLIP2Q9UDT6 1046 aa11.37□□□□□ -0.59
SMC1B-202ENST00000404354 EDC4Q6P2E9 1401 aaKnown RBP11.37□□□□□ -0.59
SMC1B-202ENST00000404354 ARAP3Q8WWN8 1544 aa11.37□□□□□ -0.59
SMC1B-202ENST00000404354 CCDC112Q8NEF3 446 aa11.37□□□□□ -0.59
SMC1B-202ENST00000404354 KLHDC4Q8TBB5 520 aa11.37□□□□□ -0.59
SMC1B-202ENST00000404354 BOLA2Q9H3K6 86 aa11.37□□□□□ -0.59
SMC1B-202ENST00000404354 PIK3C2BO00750 1634 aa11.37□□□□□ -0.59
SMC1B-202ENST00000404354 MYO5BQ9ULV0 1848 aa11.36□□□□□ -0.59
SMC1B-202ENST00000404354 VGLL3A8MV65 326 aa11.36□□□□□ -0.59
SMC1B-202ENST00000404354 JAK2O60674 1132 aa11.36□□□□□ -0.59
SMC1B-202ENST00000404354 TMEM87AQ8NBN3 555 aa11.36□□□□□ -0.59
SMC1B-202ENST00000404354 IL17REQ8NFR9 667 aa11.36□□□□□ -0.59
SMC1B-202ENST00000404354 SLC26A8Q96RN1 970 aa11.36□□□□□ -0.59
SMC1B-202ENST00000404354 RBM8AQ9Y5S9 174 aaKnown RBP11.36□□□□□ -0.59
SMC1B-202ENST00000404354 USP16Q9Y5T5 823 aa11.36□□□□□ -0.59
SMC1B-202ENST00000404354 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.36□□□□□ -0.59
SMC1B-202ENST00000404354 ZSCAN25Q6NSZ9 544 aa11.36□□□□□ -0.59
SMC1B-202ENST00000404354 IFIT2P09913 472 aaKnown RBP11.36□□□□□ -0.59
SMC1B-202ENST00000404354 AACSQ86V21 672 aa11.36□□□□□ -0.59
SMC1B-202ENST00000404354 NGDNQ8NEJ9 315 aaKnown RBP11.36□□□□□ -0.59
SMC1B-202ENST00000404354 KIF1BPQ96EK5 621 aa11.36□□□□□ -0.59
SMC1B-202ENST00000404354 CHPF2Q9P2E5 772 aa11.36□□□□□ -0.59
SMC1B-202ENST00000404354 CRB1P82279 1406 aa11.35□□□□□ -0.59
SMC1B-202ENST00000404354 ZKSCAN1P17029 563 aaPredicted RBP11.35□□□□□ -0.59
SMC1B-202ENST00000404354 AIMP1Q12904 312 aaKnown RBP11.35□□□□□ -0.59
SMC1B-202ENST00000404354 UTP14CQ5TAP6 766 aaKnown RBP11.35□□□□□ -0.59
SMC1B-202ENST00000404354 FMNL2Q96PY5 1086 aa11.35□□□□□ -0.59
SMC1B-202ENST00000404354 CDK12Q9NYV4 1490 aaPredicted RBP11.35□□□□□ -0.59
SMC1B-202ENST00000404354 CPSF1Q10570 1443 aaKnown RBP11.35□□□□□ -0.59
SMC1B-202ENST00000404354 GUCY1B3Q02153 619 aa11.35□□□□□ -0.59
SMC1B-202ENST00000404354 SSH3Q8TE77 659 aa11.35□□□□□ -0.59
SMC1B-202ENST00000404354 CWF19L2Q2TBE0 894 aaKnown RBP11.35□□□□□ -0.59
SMC1B-202ENST00000404354 CLASRPQ8N2M8 674 aaKnown RBP11.35□□□□□ -0.59
SMC1B-202ENST00000404354 GTPBP4Q9BZE4 634 aaKnown RBP11.35□□□□□ -0.59
SMC1B-202ENST00000404354 HSP90B1P14625 803 aaKnown RBP11.34□□□□□ -0.59
SMC1B-202ENST00000404354 C9orf78Q9NZ63 289 aaPredicted RBP11.34□□□□□ -0.59
SMC1B-202ENST00000404354 NLRP6P59044 892 aa11.34□□□□□ -0.59
SMC1B-202ENST00000404354 FGD1P98174 961 aa11.34□□□□□ -0.59
SMC1B-202ENST00000404354 NMIQ13287 307 aaPredicted RBP11.34□□□□□ -0.59
SMC1B-202ENST00000404354 GORABQ5T7V8 394 aa11.34□□□□□ -0.59
SMC1B-202ENST00000404354 BBXQ8WY36 941 aaPredicted RBP11.34□□□□□ -0.59
SMC1B-202ENST00000404354 ANKRD7Q92527 254 aa11.34□□□□□ -0.59
SMC1B-202ENST00000404354 ZNF215Q9UL58 517 aaPredicted RBP11.34□□□□□ -0.59
SMC1B-202ENST00000404354 ALKQ9UM73 1620 aa11.34□□□□□ -0.59
SMC1B-202ENST00000404354 GNAT3A8MTJ3 354 aa11.34□□□□□ -0.59
SMC1B-202ENST00000404354 ZNF75DP51815 510 aa11.34□□□□□ -0.59
SMC1B-202ENST00000404354 CREB3L3Q68CJ9 461 aa11.34□□□□□ -0.59
SMC1B-202ENST00000404354 TLR7Q9NYK1 1049 aaKnown RBP11.34□□□□□ -0.59
SMC1B-202ENST00000404354 GOLGA6L19H0YKK7 550 aa11.33□□□□□ -0.6
SMC1B-202ENST00000404354 LGR6Q9HBX8 967 aa11.33□□□□□ -0.6
SMC1B-202ENST00000404354 RIMBP3CA6NJZ7 1639 aa11.33□□□□□ -0.6
SMC1B-202ENST00000404354 RIMBP3BA6NNM3 1639 aa11.33□□□□□ -0.6
SMC1B-202ENST00000404354 RIMBP3Q9UFD9 1639 aa11.33□□□□□ -0.6
SMC1B-202ENST00000404354 AATKQ6ZMQ8 1374 aa11.33□□□□□ -0.6
SMC1B-202ENST00000404354 PTPN21Q16825 1174 aa11.33□□□□□ -0.6
SMC1B-202ENST00000404354 CEP135Q66GS9 1140 aa11.33□□□□□ -0.6
SMC1B-202ENST00000404354 PGBD1Q96JS3 809 aa11.33□□□□□ -0.6
SMC1B-202ENST00000404354 FSD1Q9BTV5 496 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms