RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 SLC4A9Q96Q91 983 aa12.22□□□□□ -0.45
VPS53-203ENST00000401468 PLEKHF1Q96S99 279 aa12.22□□□□□ -0.45
VPS53-203ENST00000401468 MRS2Q9HD23 443 aa12.22□□□□□ -0.45
VPS53-203ENST00000401468 BRCA1P38398 1863 aaKnown RBP12.22□□□□□ -0.45
VPS53-203ENST00000401468 CCDC88AQ3V6T2 1871 aa12.22□□□□□ -0.45
VPS53-203ENST00000401468 KIF13BQ9NQT8 1826 aa12.22□□□□□ -0.45
VPS53-203ENST00000401468 ZNF831Q5JPB2 1677 aa12.22□□□□□ -0.45
VPS53-203ENST00000401468 UBR2Q8IWV8 1755 aa12.21□□□□□ -0.45
VPS53-203ENST00000401468 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.21□□□□□ -0.45
VPS53-203ENST00000401468 GNPATO15228 680 aa12.21□□□□□ -0.45
VPS53-203ENST00000401468 POTEB3A0JP26 581 aa12.2□□□□□ -0.46
VPS53-203ENST00000401468 PTCD1O75127 700 aaKnown RBP12.2□□□□□ -0.46
VPS53-203ENST00000401468 PLEKHO1Q53GL0 409 aaPredicted RBP12.2□□□□□ -0.46
VPS53-203ENST00000401468 POTEBQ6S5H4 581 aa12.2□□□□□ -0.46
VPS53-203ENST00000401468 SMARCC1Q92922 1105 aaPredicted RBP12.2□□□□□ -0.46
VPS53-203ENST00000401468 CICQ96RK0 1608 aaPredicted RBP12.19□□□□□ -0.46
VPS53-203ENST00000401468 U2SURPO15042 1029 aaKnown RBP12.19□□□□□ -0.46
VPS53-203ENST00000401468 U2AF1L5P0DN76 240 aaPredicted RBP12.19□□□□□ -0.46
VPS53-203ENST00000401468 YBX3P16989 372 aaKnown RBP eCLIP12.19□□□□□ -0.46
VPS53-203ENST00000401468 CABP4P57796 275 aa12.19□□□□□ -0.46
VPS53-203ENST00000401468 U2AF1Q01081 240 aaKnown RBP eCLIP12.19□□□□□ -0.46
VPS53-203ENST00000401468 NFATC2IPQ8NCF5 419 aa12.19□□□□□ -0.46
VPS53-203ENST00000401468 LGR6Q9HBX8 967 aa12.19□□□□□ -0.46
VPS53-203ENST00000401468 ADAMTS8Q9UP79 889 aa12.19□□□□□ -0.46
VPS53-203ENST00000401468 WDR43Q15061 677 aaKnown RBP eCLIP12.18□□□□□ -0.46
VPS53-203ENST00000401468 C1orf141Q5JVX7 400 aa12.18□□□□□ -0.46
VPS53-203ENST00000401468 SLC16A10Q8TF71 515 aa12.18□□□□□ -0.46
VPS53-203ENST00000401468 PNNQ9H307 717 aaKnown RBP12.18□□□□□ -0.46
VPS53-203ENST00000401468 SLC39A6Q13433 755 aa12.17□□□□□ -0.46
VPS53-203ENST00000401468 MRC1P22897 1456 aa12.16□□□□□ -0.46
VPS53-203ENST00000401468 PRKAR2BP31323 418 aa12.16□□□□□ -0.46
VPS53-203ENST00000401468 AMOTQ4VCS5 1084 aa12.16□□□□□ -0.46
VPS53-203ENST00000401468 HS6ST3Q8IZP7 471 aa12.16□□□□□ -0.46
VPS53-203ENST00000401468 DCAF5Q96JK2 942 aa12.16□□□□□ -0.46
VPS53-203ENST00000401468 PHACTR3Q96KR7 559 aa12.16□□□□□ -0.46
VPS53-203ENST00000401468 ZSWIM6Q9HCJ5 1215 aa12.16□□□□□ -0.46
VPS53-203ENST00000401468 MAP3K5Q99683 1374 aa12.16□□□□□ -0.46
VPS53-203ENST00000401468 MTHFSDQ2M296 383 aaKnown RBP12.15□□□□□ -0.46
VPS53-203ENST00000401468 RUNDC1Q96C34 613 aa12.15□□□□□ -0.46
VPS53-203ENST00000401468 SRP68Q9UHB9 627 aaKnown RBP12.15□□□□□ -0.46
VPS53-203ENST00000401468 ERVV-2B6SEH9 535 aa12.14□□□□□ -0.47
VPS53-203ENST00000401468 KCPQ6ZWJ8 1503 aa12.14□□□□□ -0.47
VPS53-203ENST00000401468 SBF1O95248 1867 aa12.14□□□□□ -0.47
VPS53-203ENST00000401468 ARFGEF1Q9Y6D6 1849 aa12.14□□□□□ -0.47
VPS53-203ENST00000401468 C2orf72A6NCS6 295 aa12.13□□□□□ -0.47
VPS53-203ENST00000401468 MMP10P09238 476 aa12.13□□□□□ -0.47
VPS53-203ENST00000401468 DNAJC10Q8IXB1 793 aa12.13□□□□□ -0.47
VPS53-203ENST00000401468 ANKRD31Q8N7Z5 1873 aa12.12□□□□□ -0.47
VPS53-203ENST00000401468 RNMTO43148 476 aaKnown RBP12.12□□□□□ -0.47
VPS53-203ENST00000401468 PPP1R37O75864 691 aa12.12□□□□□ -0.47
VPS53-203ENST00000401468 HSP90AB1P08238 724 aaKnown RBP12.12□□□□□ -0.47
VPS53-203ENST00000401468 HSPA6P17066 643 aa12.12□□□□□ -0.47
VPS53-203ENST00000401468 SSFA2P28290 1259 aa12.12□□□□□ -0.47
VPS53-203ENST00000401468 CRKLP46109 303 aaKnown RBP12.12□□□□□ -0.47
VPS53-203ENST00000401468 SPNS2Q8IVW8 549 aa12.12□□□□□ -0.47
VPS53-203ENST00000401468 GAS2L2Q8NHY3 880 aa12.12□□□□□ -0.47
VPS53-203ENST00000401468 ARHGEF1Q92888 912 aaKnown RBP12.12□□□□□ -0.47
VPS53-203ENST00000401468 CEMIPQ8WUJ3 1361 aa12.12□□□□□ -0.47
VPS53-203ENST00000401468 KDM3BQ7LBC6 1761 aa12.12□□□□□ -0.47
VPS53-203ENST00000401468 HTATSF1O43719 755 aaKnown RBP12.11□□□□□ -0.47
VPS53-203ENST00000401468 NFE2L2Q16236 605 aa12.11□□□□□ -0.47
VPS53-203ENST00000401468 AKAP4Q5JQC9 854 aa12.11□□□□□ -0.47
VPS53-203ENST00000401468 GPR153Q6NV75 609 aa12.11□□□□□ -0.47
VPS53-203ENST00000401468 NGEFQ8N5V2 710 aa12.11□□□□□ -0.47
VPS53-203ENST00000401468 FLAD1Q8NFF5 587 aa12.11□□□□□ -0.47
VPS53-203ENST00000401468 ZNF526Q8TF50 670 aaPredicted RBP12.11□□□□□ -0.47
VPS53-203ENST00000401468 RTCBQ9Y3I0 505 aaKnown RBP12.11□□□□□ -0.47
VPS53-203ENST00000401468 TMPOP42166 694 aaKnown RBP12.1□□□□□ -0.47
VPS53-203ENST00000401468 PRELPP51888 382 aa12.1□□□□□ -0.47
VPS53-203ENST00000401468 CCDC27Q2M243 656 aa12.1□□□□□ -0.47
VPS53-203ENST00000401468 VARS2Q5ST30 1063 aaKnown RBP12.1□□□□□ -0.47
VPS53-203ENST00000401468 TRAPPC3LQ5T215 181 aa12.1□□□□□ -0.47
VPS53-203ENST00000401468 CCDC146Q8IYE0 955 aa12.1□□□□□ -0.47
VPS53-203ENST00000401468 FAM9BQ8IZU0 186 aa12.1□□□□□ -0.47
VPS53-203ENST00000401468 TMC2Q8TDI7 906 aa12.1□□□□□ -0.47
VPS53-203ENST00000401468 KRTAP3-3Q9BYR6 98 aa12.1□□□□□ -0.47
VPS53-203ENST00000401468 KRTAP3-2Q9BYR7 98 aa12.1□□□□□ -0.47
VPS53-203ENST00000401468 SLC52A2Q9HAB3 445 aa12.1□□□□□ -0.47
VPS53-203ENST00000401468 DLEC1Q9Y238 1755 aa12.1□□□□□ -0.47
VPS53-203ENST00000401468 MAPK8IP3Q9UPT6 1336 aa12.1□□□□□ -0.47
VPS53-203ENST00000401468 A0A0G2JLW4 131 aa12.09□□□□□ -0.47
VPS53-203ENST00000401468 KIF3CO14782 793 aa12.09□□□□□ -0.47
VPS53-203ENST00000401468 RFC4P35249 363 aa12.09□□□□□ -0.47
VPS53-203ENST00000401468 ARSIQ5FYB1 569 aa12.09□□□□□ -0.47
VPS53-203ENST00000401468 BCORQ6W2J9 1755 aa12.09□□□□□ -0.47
VPS53-203ENST00000401468 COL11A2P13942 1736 aaPredicted RBP12.08□□□□□ -0.47
VPS53-203ENST00000401468 PXDNLA1KZ92 1463 aa12.08□□□□□ -0.47
VPS53-203ENST00000401468 SCN7AQ01118 1682 aa12.08□□□□□ -0.48
VPS53-203ENST00000401468 GNAT3A8MTJ3 354 aa12.08□□□□□ -0.48
VPS53-203ENST00000401468 APAF1O14727 1248 aa12.08□□□□□ -0.48
VPS53-203ENST00000401468 KCNQ3O43525 872 aa12.08□□□□□ -0.48
VPS53-203ENST00000401468 NEFMP07197 916 aa12.08□□□□□ -0.48
VPS53-203ENST00000401468 GYS1P13807 737 aa12.08□□□□□ -0.48
VPS53-203ENST00000401468 INTS5Q6P9B9 1019 aaKnown RBP12.08□□□□□ -0.48
VPS53-203ENST00000401468 CNTNAP4Q9C0A0 1308 aa12.08□□□□□ -0.48
VPS53-203ENST00000401468 RPS6KA4O75676 772 aa12.07□□□□□ -0.48
VPS53-203ENST00000401468 PIP4K2AP48426 406 aaPredicted RBP12.07□□□□□ -0.48
VPS53-203ENST00000401468 MMRN1Q13201 1228 aa12.07□□□□□ -0.48
VPS53-203ENST00000401468 ZNF330Q9Y3S2 320 aaPredicted RBP12.07□□□□□ -0.48
VPS53-203ENST00000401468 CD2APQ9Y5K6 639 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms