RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 UTP14AQ9BVJ6 771 aaKnown RBP10.83□□□□□ -0.68
COL28A1-201ENST00000399429 EFCC1Q9HA90 598 aa10.83□□□□□ -0.68
COL28A1-201ENST00000399429 ANKRD65E5RJM6 399 aa10.83□□□□□ -0.68
COL28A1-201ENST00000399429 RNF187Q5TA31 235 aaPredicted RBP10.83□□□□□ -0.68
COL28A1-201ENST00000399429 LRRC8AQ8IWT6 810 aa10.83□□□□□ -0.68
COL28A1-201ENST00000399429 AFAP1Q8N556 730 aa10.83□□□□□ -0.68
COL28A1-201ENST00000399429 ZNF526Q8TF50 670 aaPredicted RBP10.83□□□□□ -0.68
COL28A1-201ENST00000399429 PLCD4Q9BRC7 762 aa10.83□□□□□ -0.68
COL28A1-201ENST00000399429 FAM107BQ9H098 131 aa10.83□□□□□ -0.68
COL28A1-201ENST00000399429 RRP15Q9Y3B9 282 aaKnown RBP10.83□□□□□ -0.68
COL28A1-201ENST00000399429 KIF5CO60282 957 aa10.83□□□□□ -0.68
COL28A1-201ENST00000399429 RASSF8Q8NHQ8 419 aa10.83□□□□□ -0.68
COL28A1-201ENST00000399429 PCMTD1Q96MG8 357 aaPredicted RBP10.83□□□□□ -0.68
COL28A1-201ENST00000399429 CABP1Q9NZU7 370 aa10.83□□□□□ -0.68
COL28A1-201ENST00000399429 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP10.83□□□□□ -0.68
COL28A1-201ENST00000399429 GYS2P54840 703 aa10.82□□□□□ -0.68
COL28A1-201ENST00000399429 PPM1EQ8WY54 764 aa10.82□□□□□ -0.68
COL28A1-201ENST00000399429 RABEP2Q9H5N1 569 aa10.82□□□□□ -0.68
COL28A1-201ENST00000399429 ZCCHC17Q9NP64 241 aaKnown RBP10.82□□□□□ -0.68
COL28A1-201ENST00000399429 TRIM35Q9UPQ4 493 aa10.82□□□□□ -0.68
COL28A1-201ENST00000399429 JRKLQ9Y4A0 524 aa10.82□□□□□ -0.68
COL28A1-201ENST00000399429 MAGI2Q86UL8 1455 aa10.82□□□□□ -0.68
COL28A1-201ENST00000399429 AMPHP49418 695 aa10.82□□□□□ -0.68
COL28A1-201ENST00000399429 SYCP1Q15431 976 aa10.82□□□□□ -0.68
COL28A1-201ENST00000399429 RAI14Q9P0K7 980 aa10.82□□□□□ -0.68
COL28A1-201ENST00000399429 RAD50Q92878 1312 aa10.82□□□□□ -0.68
COL28A1-201ENST00000399429 CLCN6P51797 869 aa10.82□□□□□ -0.68
COL28A1-201ENST00000399429 ARHGEF12Q9NZN5 1544 aa10.81□□□□□ -0.68
COL28A1-201ENST00000399429 RHOXF2BP0C7M4 288 aa10.81□□□□□ -0.68
COL28A1-201ENST00000399429 UBASH3AP57075 661 aa10.81□□□□□ -0.68
COL28A1-201ENST00000399429 PPP2R3AQ06190 1150 aa10.81□□□□□ -0.68
COL28A1-201ENST00000399429 TEFQ10587 303 aa10.81□□□□□ -0.68
COL28A1-201ENST00000399429 GOLGA1Q92805 767 aa10.81□□□□□ -0.68
COL28A1-201ENST00000399429 RHOXF2Q9BQY4 288 aa10.81□□□□□ -0.68
COL28A1-201ENST00000399429 KCNF1Q9H3M0 494 aa10.81□□□□□ -0.68
COL28A1-201ENST00000399429 SLC3A2P08195 630 aaKnown RBP10.81□□□□□ -0.68
COL28A1-201ENST00000399429 MAP2K2P36507 400 aa10.81□□□□□ -0.68
COL28A1-201ENST00000399429 TRIM29Q14134 588 aa10.81□□□□□ -0.68
COL28A1-201ENST00000399429 ARID5BQ14865 1188 aa10.81□□□□□ -0.68
COL28A1-201ENST00000399429 KARSQ15046 597 aaKnown RBP10.81□□□□□ -0.68
COL28A1-201ENST00000399429 KRT24Q2M2I5 525 aa10.81□□□□□ -0.68
COL28A1-201ENST00000399429 TRIM66O15016 1216 aa10.81□□□□□ -0.68
COL28A1-201ENST00000399429 SART3Q15020 963 aaKnown RBP10.81□□□□□ -0.68
COL28A1-201ENST00000399429 RRS1Q15050 365 aaKnown RBP10.81□□□□□ -0.68
COL28A1-201ENST00000399429 TICAM2Q86XR7 235 aa10.81□□□□□ -0.68
COL28A1-201ENST00000399429 EPB41L2O43491 1005 aaKnown RBP10.81□□□□□ -0.68
COL28A1-201ENST00000399429 CYP2E1P05181 493 aaPredicted RBP10.81□□□□□ -0.68
COL28A1-201ENST00000399429 PNMA6AP0CW24 399 aaPredicted RBP10.81□□□□□ -0.68
COL28A1-201ENST00000399429 CCDC30Q5VVM6 783 aa10.81□□□□□ -0.68
COL28A1-201ENST00000399429 ICE2Q659A1 982 aa10.8□□□□□ -0.68
COL28A1-201ENST00000399429 NBPF11Q86T75 865 aa10.8□□□□□ -0.68
COL28A1-201ENST00000399429 CPLX2Q6PUV4 134 aaKnown RBP10.8□□□□□ -0.68
COL28A1-201ENST00000399429 AACSQ86V21 672 aa10.8□□□□□ -0.68
COL28A1-201ENST00000399429 FEZ2Q9UHY8 353 aaPredicted RBP10.8□□□□□ -0.68
COL28A1-201ENST00000399429 MRVI1Q9Y6F6 885 aa10.8□□□□□ -0.68
COL28A1-201ENST00000399429 PPIP5K1Q6PFW1 1433 aa10.8□□□□□ -0.68
COL28A1-201ENST00000399429 EBAG9O00559 213 aa10.8□□□□□ -0.68
COL28A1-201ENST00000399429 NAP1L1P55209 391 aaKnown RBP10.8□□□□□ -0.68
COL28A1-201ENST00000399429 GBP6Q6ZN66 633 aa10.8□□□□□ -0.68
COL28A1-201ENST00000399429 SMARCE1Q969G3 411 aa10.8□□□□□ -0.68
COL28A1-201ENST00000399429 GLRX3O76003 335 aaKnown RBP10.79□□□□□ -0.68
COL28A1-201ENST00000399429 NF2P35240 595 aa10.79□□□□□ -0.68
COL28A1-201ENST00000399429 CCT2P78371 535 aaKnown RBP10.79□□□□□ -0.68
COL28A1-201ENST00000399429 GOLGA5Q8TBA6 731 aa10.79□□□□□ -0.68
COL28A1-201ENST00000399429 FILIP1LQ4L180 1135 aa10.79□□□□□ -0.68
COL28A1-201ENST00000399429 LMOD2Q6P5Q4 547 aa10.79□□□□□ -0.68
COL28A1-201ENST00000399429 CEP57Q86XR8 500 aa10.79□□□□□ -0.68
COL28A1-201ENST00000399429 KIF1BPQ96EK5 621 aa10.79□□□□□ -0.68
COL28A1-201ENST00000399429 ABCA5Q8WWZ7 1642 aa10.79□□□□□ -0.68
COL28A1-201ENST00000399429 TTC6Q86TZ1 520 aa10.79□□□□□ -0.68
COL28A1-201ENST00000399429 CLSTN2Q9H4D0 955 aa10.79□□□□□ -0.68
COL28A1-201ENST00000399429 LZTFL1Q9NQ48 299 aa10.79□□□□□ -0.68
COL28A1-201ENST00000399429 HIP1O00291 1037 aa10.78□□□□□ -0.68
COL28A1-201ENST00000399429 CTIFO43310 598 aaKnown RBP10.78□□□□□ -0.68
COL28A1-201ENST00000399429 SIRT2Q8IXJ6 389 aa10.78□□□□□ -0.68
COL28A1-201ENST00000399429 NR1I2O75469 434 aa10.78□□□□□ -0.68
COL28A1-201ENST00000399429 CDC37L1Q7L3B6 337 aa10.78□□□□□ -0.68
COL28A1-201ENST00000399429 BRF1Q92994 677 aa10.78□□□□□ -0.68
COL28A1-201ENST00000399429 A0A087WWV3 80 aa10.78□□□□□ -0.68
COL28A1-201ENST00000399429 POLR3DP05423 398 aaPredicted RBP10.78□□□□□ -0.68
COL28A1-201ENST00000399429 DNAJC21Q5F1R6 531 aaKnown RBP10.78□□□□□ -0.68
COL28A1-201ENST00000399429 HDXQ7Z353 690 aa10.78□□□□□ -0.68
COL28A1-201ENST00000399429 SECISBP2LQ93073 1101 aaKnown RBP10.78□□□□□ -0.68
COL28A1-201ENST00000399429 PRAM1Q96QH2 718 aa10.78□□□□□ -0.68
COL28A1-201ENST00000399429 EMILIN1Q9Y6C2 1016 aa10.78□□□□□ -0.68
COL28A1-201ENST00000399429 NLRP1Q9C000 1473 aa10.78□□□□□ -0.68
COL28A1-201ENST00000399429 NESP48681 1621 aa10.78□□□□□ -0.68
COL28A1-201ENST00000399429 USP27XA6NNY8 438 aa10.78□□□□□ -0.68
COL28A1-201ENST00000399429 MAP9Q49MG5 647 aa10.78□□□□□ -0.68
COL28A1-201ENST00000399429 LARP1Q6PKG0 1096 aaKnown RBP10.78□□□□□ -0.68
COL28A1-201ENST00000399429 PHACTR3Q96KR7 559 aa10.78□□□□□ -0.68
COL28A1-201ENST00000399429 LRRC2Q9BYS8 371 aa10.78□□□□□ -0.68
COL28A1-201ENST00000399429 POTEB2H3BUK9 544 aa10.77□□□□□ -0.68
COL28A1-201ENST00000399429 TUBB4AP04350 444 aa10.77□□□□□ -0.68
COL28A1-201ENST00000399429 BOLA2Q9H3K6 86 aa10.77□□□□□ -0.68
COL28A1-201ENST00000399429 SNX14Q9Y5W7 946 aa10.77□□□□□ -0.68
COL28A1-201ENST00000399429 GOLGA6L9A6NEM1 432 aa10.77□□□□□ -0.69
COL28A1-201ENST00000399429 CUL4AQ13619 759 aa10.77□□□□□ -0.69
COL28A1-201ENST00000399429 KLHL10Q6JEL2 608 aa10.77□□□□□ -0.69
COL28A1-201ENST00000399429 PLEKHA4Q9H4M7 779 aa10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 135.2 ms