RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 CCDC85AQ96PX6 553 aaPredicted RBP11.83□□□□□ -0.51
LIMCH1-203ENST00000396595 MYD88Q99836 296 aa11.83□□□□□ -0.51
LIMCH1-203ENST00000396595 FLIIQ13045 1269 aa11.83□□□□□ -0.52
LIMCH1-203ENST00000396595 IQCA1Q86XH1 822 aa11.83□□□□□ -0.52
LIMCH1-203ENST00000396595 DBF4Q9UBU7 674 aaPredicted RBP11.83□□□□□ -0.52
LIMCH1-203ENST00000396595 CCDC171Q6TFL3 1326 aa11.83□□□□□ -0.52
LIMCH1-203ENST00000396595 CDK13Q14004 1512 aaKnown RBP11.83□□□□□ -0.52
LIMCH1-203ENST00000396595 GOLGA8AA7E2F4 631 aa11.83□□□□□ -0.52
LIMCH1-203ENST00000396595 USP5P45974 858 aa11.83□□□□□ -0.52
LIMCH1-203ENST00000396595 SSRP1Q08945 709 aaKnown RBP11.83□□□□□ -0.52
LIMCH1-203ENST00000396595 NAA15Q9BXJ9 866 aaKnown RBP11.83□□□□□ -0.52
LIMCH1-203ENST00000396595 SPINK5Q9NQ38 1064 aaPredicted RBP11.83□□□□□ -0.52
LIMCH1-203ENST00000396595 MINDY4BA8MYZ0 360 aa11.83□□□□□ -0.52
LIMCH1-203ENST00000396595 HYPKQ9NX55 129 aa11.83□□□□□ -0.52
LIMCH1-203ENST00000396595 RPRD2Q5VT52 1461 aaKnown RBP11.83□□□□□ -0.52
LIMCH1-203ENST00000396595 IFFO1Q0D2I5 559 aa11.82□□□□□ -0.52
LIMCH1-203ENST00000396595 DAAM2Q86T65 1068 aa11.82□□□□□ -0.52
LIMCH1-203ENST00000396595 RBM27Q9P2N5 1060 aaKnown RBP11.82□□□□□ -0.52
LIMCH1-203ENST00000396595 PTPN23Q9H3S7 1636 aa11.82□□□□□ -0.52
LIMCH1-203ENST00000396595 ABCC5O15440 1437 aa11.82□□□□□ -0.52
LIMCH1-203ENST00000396595 PYM1Q9BRP8 204 aaKnown RBP11.82□□□□□ -0.52
LIMCH1-203ENST00000396595 ZSCAN16Q9H4T2 348 aaPredicted RBP11.82□□□□□ -0.52
LIMCH1-203ENST00000396595 CEP135Q66GS9 1140 aa11.82□□□□□ -0.52
LIMCH1-203ENST00000396595 FAM114A1Q8IWE2 563 aa11.82□□□□□ -0.52
LIMCH1-203ENST00000396595 ARHGAP45Q92619 1136 aa11.82□□□□□ -0.52
LIMCH1-203ENST00000396595 HCLS1P14317 486 aaPredicted RBP11.82□□□□□ -0.52
LIMCH1-203ENST00000396595 KANK3Q6NY19 840 aa11.82□□□□□ -0.52
LIMCH1-203ENST00000396595 GTPBP4Q9BZE4 634 aaKnown RBP11.82□□□□□ -0.52
LIMCH1-203ENST00000396595 NUCB1Q02818 461 aa11.81□□□□□ -0.52
LIMCH1-203ENST00000396595 ZSCAN29Q8IWY8 852 aaPredicted RBP11.81□□□□□ -0.52
LIMCH1-203ENST00000396595 CPLX3Q8WVH0 158 aa11.81□□□□□ -0.52
LIMCH1-203ENST00000396595 ALS2CR12Q96Q35 445 aa11.81□□□□□ -0.52
LIMCH1-203ENST00000396595 SCAF11Q99590 1463 aaKnown RBP11.81□□□□□ -0.52
LIMCH1-203ENST00000396595 IFIT3O14879 490 aaKnown RBP11.81□□□□□ -0.52
LIMCH1-203ENST00000396595 CAMSAP2Q08AD1 1489 aa11.81□□□□□ -0.52
LIMCH1-203ENST00000396595 IFIT5Q13325 482 aaKnown RBP11.81□□□□□ -0.52
LIMCH1-203ENST00000396595 TMEM266Q2M3C6 531 aa11.81□□□□□ -0.52
LIMCH1-203ENST00000396595 ANKLE2Q86XL3 938 aa11.81□□□□□ -0.52
LIMCH1-203ENST00000396595 NME9Q86XW9 330 aa11.81□□□□□ -0.52
LIMCH1-203ENST00000396595 KLHL34Q8N239 644 aa11.81□□□□□ -0.52
LIMCH1-203ENST00000396595 PCF11O94913 1555 aaKnown RBP11.81□□□□□ -0.52
LIMCH1-203ENST00000396595 MRC2Q9UBG0 1479 aa11.81□□□□□ -0.52
LIMCH1-203ENST00000396595 ZSCAN22P10073 491 aaPredicted RBP11.81□□□□□ -0.52
LIMCH1-203ENST00000396595 CCT2P78371 535 aaKnown RBP11.81□□□□□ -0.52
LIMCH1-203ENST00000396595 TDRD12Q587J7 1177 aaKnown RBP11.81□□□□□ -0.52
LIMCH1-203ENST00000396595 CAVIN4Q5BKX8 364 aa11.81□□□□□ -0.52
LIMCH1-203ENST00000396595 TMX3Q96JJ7 454 aa11.81□□□□□ -0.52
LIMCH1-203ENST00000396595 SWAP70Q9UH65 585 aa11.81□□□□□ -0.52
LIMCH1-203ENST00000396595 EMILIN1Q9Y6C2 1016 aa11.81□□□□□ -0.52
LIMCH1-203ENST00000396595 CCDC194A0A1B0GVG4 234 aa11.81□□□□□ -0.52
LIMCH1-203ENST00000396595 SMC1AQ14683 1233 aaKnown RBP11.81□□□□□ -0.52
LIMCH1-203ENST00000396595 CCDC113Q9H0I3 377 aa11.81□□□□□ -0.52
LIMCH1-203ENST00000396595 MKNK2Q9HBH9 465 aa11.81□□□□□ -0.52
LIMCH1-203ENST00000396595 USP16Q9Y5T5 823 aa11.81□□□□□ -0.52
LIMCH1-203ENST00000396595 GCOM1H8Y6P7 765 aaPredicted RBP11.81□□□□□ -0.52
LIMCH1-203ENST00000396595 MYZAPP0CAP1 466 aa11.81□□□□□ -0.52
LIMCH1-203ENST00000396595 BIN1O00499 593 aa11.8□□□□□ -0.52
LIMCH1-203ENST00000396595 RBM5P52756 815 aaKnown RBP eCLIP11.8□□□□□ -0.52
LIMCH1-203ENST00000396595 NEK1Q96PY6 1258 aa11.8□□□□□ -0.52
LIMCH1-203ENST00000396595 IARSP41252 1262 aaKnown RBP11.8□□□□□ -0.52
LIMCH1-203ENST00000396595 CCDC178Q5BJE1 867 aa11.8□□□□□ -0.52
LIMCH1-203ENST00000396595 CCDC102BQ68D86 513 aa11.8□□□□□ -0.52
LIMCH1-203ENST00000396595 SNX21Q969T3 373 aa11.8□□□□□ -0.52
LIMCH1-203ENST00000396595 ORC3Q9UBD5 711 aaPredicted RBP11.8□□□□□ -0.52
LIMCH1-203ENST00000396595 KIAA0586Q9BVV6 1533 aa11.8□□□□□ -0.52
LIMCH1-203ENST00000396595 ANAPC15P60006 121 aa11.8□□□□□ -0.52
LIMCH1-203ENST00000396595 TTC21BQ7Z4L5 1316 aa11.8□□□□□ -0.52
LIMCH1-203ENST00000396595 MTIF2P46199 727 aaKnown RBP11.79□□□□□ -0.52
LIMCH1-203ENST00000396595 ZNF652Q9Y2D9 606 aa11.79□□□□□ -0.52
LIMCH1-203ENST00000396595 MPHOSPH10O00566 681 aaKnown RBP11.79□□□□□ -0.52
LIMCH1-203ENST00000396595 POLR3DP05423 398 aaPredicted RBP11.79□□□□□ -0.52
LIMCH1-203ENST00000396595 XRCC6P12956 609 aaKnown RBP eCLIP11.79□□□□□ -0.52
LIMCH1-203ENST00000396595 EHBP1Q8NDI1 1231 aa11.79□□□□□ -0.52
LIMCH1-203ENST00000396595 PPM1EQ8WY54 764 aa11.79□□□□□ -0.52
LIMCH1-203ENST00000396595 LARP6Q9BRS8 491 aaKnown RBP11.79□□□□□ -0.52
LIMCH1-203ENST00000396595 RANBP6O60518 1105 aaKnown RBP11.79□□□□□ -0.52
LIMCH1-203ENST00000396595 SLC5A1P13866 664 aa11.79□□□□□ -0.52
LIMCH1-203ENST00000396595 NLRP5P59047 1200 aa11.79□□□□□ -0.52
LIMCH1-203ENST00000396595 GNG11P61952 73 aa11.79□□□□□ -0.52
LIMCH1-203ENST00000396595 TNIP1Q15025 636 aa11.79□□□□□ -0.52
LIMCH1-203ENST00000396595 TTC31Q49AM3 519 aaPredicted RBP11.79□□□□□ -0.52
LIMCH1-203ENST00000396595 SPECC1Q5M775 1068 aa11.79□□□□□ -0.52
LIMCH1-203ENST00000396595 KRT222Q8N1A0 295 aa11.79□□□□□ -0.52
LIMCH1-203ENST00000396595 PIK3R4Q99570 1358 aa11.79□□□□□ -0.52
LIMCH1-203ENST00000396595 GSTTP1A0A1W2PQM5 241 aa11.79□□□□□ -0.52
LIMCH1-203ENST00000396595 ZC3H6P61129 1189 aaKnown RBP11.79□□□□□ -0.52
LIMCH1-203ENST00000396595 WAPLQ7Z5K2 1190 aa11.79□□□□□ -0.52
LIMCH1-203ENST00000396595 CATIPQ7Z7H3 387 aa11.79□□□□□ -0.52
LIMCH1-203ENST00000396595 FAM200AQ8TCP9 573 aa11.79□□□□□ -0.52
LIMCH1-203ENST00000396595 A0A087WZG4 1122 aa11.79□□□□□ -0.52
LIMCH1-203ENST00000396595 RAPGEF3O95398 923 aa11.79□□□□□ -0.52
LIMCH1-203ENST00000396595 CCDC175P0C221 793 aa11.79□□□□□ -0.52
LIMCH1-203ENST00000396595 KRI1Q8N9T8 703 aaKnown RBP11.79□□□□□ -0.52
LIMCH1-203ENST00000396595 MAGI1Q96QZ7 1491 aaPredicted RBP11.79□□□□□ -0.52
LIMCH1-203ENST00000396595 AMPD3Q01432 767 aa11.78□□□□□ -0.52
LIMCH1-203ENST00000396595 GIMAP6Q6P9H5 292 aa11.78□□□□□ -0.52
LIMCH1-203ENST00000396595 CCDC82Q8N4S0 544 aa11.78□□□□□ -0.52
LIMCH1-203ENST00000396595 TAOK3Q9H2K8 898 aa11.78□□□□□ -0.52
LIMCH1-203ENST00000396595 SNAPC4Q5SXM2 1469 aa11.78□□□□□ -0.52
LIMCH1-203ENST00000396595 HLTFQ14527 1009 aaKnown RBP eCLIP11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms