RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 CHMP4AQ9BY43 222 aa28.09■■■□□ 2.09
CLN3-207ENST00000395653 CHPF2Q9P2E5 772 aa28.09■■■□□ 2.09
CLN3-207ENST00000395653 DBF4Q9UBU7 674 aaPredicted RBP28.09■■■□□ 2.09
CLN3-207ENST00000395653 NRXN2Q9P2S2 1712 aa28.09■■■□□ 2.09
CLN3-207ENST00000395653 ANXA1P04083 346 aa28.09■■■□□ 2.09
CLN3-207ENST00000395653 BICDL1Q6ZP65 573 aa28.09■■■□□ 2.09
CLN3-207ENST00000395653 MAP3K15Q6ZN16 1313 aa28.08■■■□□ 2.09
CLN3-207ENST00000395653 CARMIL3Q8ND23 1372 aa28.08■■■□□ 2.09
CLN3-207ENST00000395653 SERPINB2P05120 415 aa28.07■■■□□ 2.08
CLN3-207ENST00000395653 TSPYL6Q8N831 410 aa28.07■■■□□ 2.08
CLN3-207ENST00000395653 SETDB2Q96T68 719 aa28.07■■■□□ 2.08
CLN3-207ENST00000395653 MYH16Q9H6N6 1097 aa28.07■■■□□ 2.08
CLN3-207ENST00000395653 SPINK5Q9NQ38 1064 aaPredicted RBP28.07■■■□□ 2.08
CLN3-207ENST00000395653 GOLGA2Q08379 1002 aa28.06■■■□□ 2.08
CLN3-207ENST00000395653 AFDNP55196 1824 aaKnown RBP28.05■■■□□ 2.08
CLN3-207ENST00000395653 HLFQ16534 295 aa28.05■■■□□ 2.08
CLN3-207ENST00000395653 HYPKQ9NX55 129 aa28.04■■■□□ 2.08
CLN3-207ENST00000395653 TGFB2P61812 414 aa28.03■■■□□ 2.08
CLN3-207ENST00000395653 TWISTNBQ3B726 338 aaPredicted RBP28.03■■■□□ 2.08
CLN3-207ENST00000395653 COPS6Q7L5N1 327 aa28.03■■■□□ 2.08
CLN3-207ENST00000395653 XAGE3Q8WTP9 111 aa28.03■■■□□ 2.08
CLN3-207ENST00000395653 ZBTB3Q9H5J0 574 aa28.03■■■□□ 2.08
CLN3-207ENST00000395653 ATP10DQ9P241 1426 aa28.03■■■□□ 2.08
CLN3-207ENST00000395653 DCAF8L1A6NGE4 600 aa28.02■■■□□ 2.08
CLN3-207ENST00000395653 CCDC30Q5VVM6 783 aa28.02■■■□□ 2.08
CLN3-207ENST00000395653 PXDNLA1KZ92 1463 aa28.02■■■□□ 2.08
CLN3-207ENST00000395653 NIP7Q9Y221 180 aaKnown RBP eCLIP28.01■■■□□ 2.08
CLN3-207ENST00000395653 KIAA1551Q9HCM1 1747 aa28.01■■■□□ 2.08
CLN3-207ENST00000395653 NUP98P52948 1817 aa28.01■■■□□ 2.07
CLN3-207ENST00000395653 AIMP1Q12904 312 aaKnown RBP28.01■■■□□ 2.07
CLN3-207ENST00000395653 GIGYF2Q6Y7W6 1299 aaKnown RBP28.01■■■□□ 2.07
CLN3-207ENST00000395653 EXOSC9Q06265 439 aaKnown RBP28■■■□□ 2.07
CLN3-207ENST00000395653 PRR5LQ6MZQ0 368 aa27.99■■■□□ 2.07
CLN3-207ENST00000395653 E9PSI1 815 aa27.98■■■□□ 2.07
CLN3-207ENST00000395653 CNBD1Q8NA66 436 aa27.97■■■□□ 2.07
CLN3-207ENST00000395653 NBPF5PQ86XG9 351 aaPredicted RBP27.96■■■□□ 2.07
CLN3-207ENST00000395653 VAMP4O75379 141 aa27.95■■■□□ 2.07
CLN3-207ENST00000395653 HSP90AB3PQ58FF7 597 aa27.95■■■□□ 2.07
CLN3-207ENST00000395653 ZNF34Q8IZ26 560 aa27.95■■■□□ 2.07
CLN3-207ENST00000395653 PLBD2Q8NHP8 589 aa27.95■■■□□ 2.07
CLN3-207ENST00000395653 STK31Q9BXU1 1019 aa27.95■■■□□ 2.07
CLN3-207ENST00000395653 N4BP2Q86UW6 1770 aaPredicted RBP27.95■■■□□ 2.07
CLN3-207ENST00000395653 ANKRD13DQ6ZTN6 518 aa27.94■■■□□ 2.06
CLN3-207ENST00000395653 A0A0G2JLW4 131 aa27.93■■■□□ 2.06
CLN3-207ENST00000395653 NPHP1O15259 732 aa27.93■■■□□ 2.06
CLN3-207ENST00000395653 DPEP1P16444 411 aa27.93■■■□□ 2.06
CLN3-207ENST00000395653 ST5P78524 1137 aa27.93■■■□□ 2.06
CLN3-207ENST00000395653 SLFN5Q08AF3 891 aa27.93■■■□□ 2.06
CLN3-207ENST00000395653 GPR162Q16538 588 aa27.93■■■□□ 2.06
CLN3-207ENST00000395653 TPTE2Q6XPS3 522 aa27.93■■■□□ 2.06
CLN3-207ENST00000395653 BRIP1Q9BX63 1249 aa27.93■■■□□ 2.06
CLN3-207ENST00000395653 PHAXQ9H814 394 aaKnown RBP27.93■■■□□ 2.06
CLN3-207ENST00000395653 IBTKQ9P2D0 1353 aaPredicted RBP27.93■■■□□ 2.06
CLN3-207ENST00000395653 GPTP24298 496 aa27.92■■■□□ 2.06
CLN3-207ENST00000395653 UBN2Q6ZU65 1347 aa27.92■■■□□ 2.06
CLN3-207ENST00000395653 GOLGB1Q14789 3259 aaKnown RBP27.92■■■□□ 2.06
CLN3-207ENST00000395653 ANKRD36CQ5JPF3 1778 aa27.92■■■□□ 2.06
CLN3-207ENST00000395653 PARP10Q53GL7 1025 aa27.92■■■□□ 2.06
CLN3-207ENST00000395653 PELP1Q8IZL8 1130 aaKnown RBP27.92■■■□□ 2.06
CLN3-207ENST00000395653 NYXQ9GZU5 481 aa27.92■■■□□ 2.06
CLN3-207ENST00000395653 KCNA3P22001 575 aa27.91■■■□□ 2.06
CLN3-207ENST00000395653 ANKRD31Q8N7Z5 1873 aa27.9■■■□□ 2.06
CLN3-207ENST00000395653 TCIRG1Q13488 830 aa27.9■■■□□ 2.06
CLN3-207ENST00000395653 PDZRN3Q9UPQ7 1066 aa27.9■■■□□ 2.06
CLN3-207ENST00000395653 BRCA1P38398 1863 aaKnown RBP27.89■■■□□ 2.06
CLN3-207ENST00000395653 FAM177BA6PVY3 158 aa27.89■■■□□ 2.06
CLN3-207ENST00000395653 TCERG1O14776 1098 aaKnown RBP27.89■■■□□ 2.06
CLN3-207ENST00000395653 YBX3P16989 372 aaKnown RBP eCLIP27.89■■■□□ 2.06
CLN3-207ENST00000395653 CHRNA5P30532 468 aa27.89■■■□□ 2.06
CLN3-207ENST00000395653 PDE6BP35913 854 aa27.89■■■□□ 2.06
CLN3-207ENST00000395653 CCDC24Q8N4L8 307 aa27.89■■■□□ 2.06
CLN3-207ENST00000395653 CDCA7LQ96GN5 454 aa27.89■■■□□ 2.06
CLN3-207ENST00000395653 UTRNP46939 3433 aa27.89■■■□□ 2.06
CLN3-207ENST00000395653 ARFGEF2Q9Y6D5 1785 aa27.88■■■□□ 2.05
CLN3-207ENST00000395653 SLC4A2P04920 1241 aa27.88■■■□□ 2.05
CLN3-207ENST00000395653 DDX58O95786 925 aaKnown RBP27.87■■■□□ 2.05
CLN3-207ENST00000395653 SUSD4Q5VX71 490 aa27.87■■■□□ 2.05
CLN3-207ENST00000395653 PPP1R42Q7Z4L9 355 aa27.87■■■□□ 2.05
CLN3-207ENST00000395653 TRMT2AQ8IZ69 625 aaKnown RBP27.87■■■□□ 2.05
CLN3-207ENST00000395653 PIM2Q9P1W9 311 aa27.87■■■□□ 2.05
CLN3-207ENST00000395653 DLEC1Q9Y238 1755 aa27.87■■■□□ 2.05
CLN3-207ENST00000395653 GRIN3BO60391 1043 aa27.86■■■□□ 2.05
CLN3-207ENST00000395653 GTF2E1P29083 439 aaPredicted RBP27.86■■■□□ 2.05
CLN3-207ENST00000395653 HNRNPUQ00839 825 aaKnown RBP eCLIP27.86■■■□□ 2.05
CLN3-207ENST00000395653 RIC3Q7Z5B4 369 aa27.86■■■□□ 2.05
CLN3-207ENST00000395653 WWC3Q9ULE0 1092 aa27.86■■■□□ 2.05
CLN3-207ENST00000395653 H0YIN7 160 aa27.85■■■□□ 2.05
CLN3-207ENST00000395653 NTSR2O95665 410 aa27.85■■■□□ 2.05
CLN3-207ENST00000395653 NLRP10Q86W26 655 aa27.85■■■□□ 2.05
CLN3-207ENST00000395653 C2CD5Q86YS7 1000 aa27.85■■■□□ 2.05
CLN3-207ENST00000395653 ISCA1Q9BUE6 129 aa27.84■■■□□ 2.05
CLN3-207ENST00000395653 RNF123Q5XPI4 1314 aa27.84■■■□□ 2.05
CLN3-207ENST00000395653 CACNA1FO60840 1977 aa27.84■■■□□ 2.05
CLN3-207ENST00000395653 RIC1Q4ADV7 1423 aa27.84■■■□□ 2.05
CLN3-207ENST00000395653 COL11A2P13942 1736 aaPredicted RBP27.83■■■□□ 2.05
CLN3-207ENST00000395653 ABCC12Q96J65 1359 aa27.83■■■□□ 2.05
CLN3-207ENST00000395653 KLRG2A4D1S0 409 aaPredicted RBP27.83■■■□□ 2.05
CLN3-207ENST00000395653 G2E3Q7L622 706 aa27.83■■■□□ 2.05
CLN3-207ENST00000395653 NUTM1Q86Y26 1132 aa27.83■■■□□ 2.05
CLN3-207ENST00000395653 UTP14AQ9BVJ6 771 aaKnown RBP27.83■■■□□ 2.05
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms