RNA–Protein interactions for RNA: ENST00000392811.6

SMARCD3-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 1 (best) BASIC

Gene SMARCD3, Length 2,018 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-203ENST00000392811 METTL22Q9BUU2 404 aaPredicted RBP31.26■■■□□ 2.59
SMARCD3-203ENST00000392811 AK9Q5TCS8 1911 aa31.26■■■□□ 2.59
SMARCD3-203ENST00000392811 GLI3P10071 1580 aa31.26■■■□□ 2.59
SMARCD3-203ENST00000392811 PCDH11XQ9BZA7 1347 aa31.26■■■□□ 2.59
SMARCD3-203ENST00000392811 PCDH11YQ9BZA8 1340 aa31.26■■■□□ 2.59
SMARCD3-203ENST00000392811 PIP4K2AP48426 406 aaPredicted RBP31.25■■■□□ 2.59
SMARCD3-203ENST00000392811 MYD88Q99836 296 aa31.25■■■□□ 2.59
SMARCD3-203ENST00000392811 ANO2Q9NQ90 1003 aa31.25■■■□□ 2.59
SMARCD3-203ENST00000392811 ERC1Q8IUD2 1116 aa31.24■■■□□ 2.59
SMARCD3-203ENST00000392811 ANKRD13DQ6ZTN6 518 aa31.24■■■□□ 2.59
SMARCD3-203ENST00000392811 CLASRPQ8N2M8 674 aaKnown RBP31.24■■■□□ 2.59
SMARCD3-203ENST00000392811 GCKRQ14397 625 aa31.23■■■□□ 2.59
SMARCD3-203ENST00000392811 TTC41PQ6P2S7 1318 aa31.23■■■□□ 2.59
SMARCD3-203ENST00000392811 LAMB4A4D0S4 1761 aa31.22■■■□□ 2.59
SMARCD3-203ENST00000392811 MCCP23508 829 aa31.21■■■□□ 2.59
SMARCD3-203ENST00000392811 IL25Q9H293 177 aa31.21■■■□□ 2.59
SMARCD3-203ENST00000392811 CNTROBQ8N137 903 aa31.2■■■□□ 2.59
SMARCD3-203ENST00000392811 DDX11L8A8MPP1 907 aa31.2■■■□□ 2.58
SMARCD3-203ENST00000392811 CARD10Q9BWT7 1032 aa31.2■■■□□ 2.58
SMARCD3-203ENST00000392811 PALD1Q9ULE6 856 aa31.19■■■□□ 2.58
SMARCD3-203ENST00000392811 GLRX3O76003 335 aaKnown RBP31.19■■■□□ 2.58
SMARCD3-203ENST00000392811 IL2RBP14784 551 aa31.18■■■□□ 2.58
SMARCD3-203ENST00000392811 ANAPC15P60006 121 aa31.17■■■□□ 2.58
SMARCD3-203ENST00000392811 ERVV-2B6SEH9 535 aa31.17■■■□□ 2.58
SMARCD3-203ENST00000392811 ECHDC1Q9NTX5 307 aa31.17■■■□□ 2.58
SMARCD3-203ENST00000392811 ARFGEF2Q9Y6D5 1785 aa31.17■■■□□ 2.58
SMARCD3-203ENST00000392811 NHSL1Q5SYE7 1610 aa31.16■■■□□ 2.58
SMARCD3-203ENST00000392811 SASH1O94885 1247 aa31.16■■■□□ 2.58
SMARCD3-203ENST00000392811 IFIT2P09913 472 aaKnown RBP31.16■■■□□ 2.58
SMARCD3-203ENST00000392811 G3BP1Q13283 466 aaKnown RBP eCLIP31.16■■■□□ 2.58
SMARCD3-203ENST00000392811 GBP4Q96PP9 640 aa31.16■■■□□ 2.58
SMARCD3-203ENST00000392811 STRN4Q9NRL3 753 aa31.16■■■□□ 2.58
SMARCD3-203ENST00000392811 TRAK2O60296 914 aa31.15■■■□□ 2.58
SMARCD3-203ENST00000392811 NEK4P51957 841 aa31.15■■■□□ 2.58
SMARCD3-203ENST00000392811 NKX1-1Q15270 411 aaPredicted RBP31.15■■■□□ 2.58
SMARCD3-203ENST00000392811 EPHA10Q5JZY3 1008 aa31.15■■■□□ 2.58
SMARCD3-203ENST00000392811 EPB41L2O43491 1005 aaKnown RBP31.15■■■□□ 2.58
SMARCD3-203ENST00000392811 AFDNP55196 1824 aaKnown RBP31.15■■■□□ 2.58
SMARCD3-203ENST00000392811 SHANK3Q9BYB0 1731 aa31.15■■■□□ 2.58
SMARCD3-203ENST00000392811 UBR2Q8IWV8 1755 aa31.14■■■□□ 2.58
SMARCD3-203ENST00000392811 SSFA2P28290 1259 aa31.14■■■□□ 2.58
SMARCD3-203ENST00000392811 AACSQ86V21 672 aa31.14■■■□□ 2.58
SMARCD3-203ENST00000392811 IL17RAQ96F46 866 aa31.14■■■□□ 2.58
SMARCD3-203ENST00000392811 GPATCH3Q96I76 525 aa31.14■■■□□ 2.58
SMARCD3-203ENST00000392811 SGSM2O43147 1006 aa31.14■■■□□ 2.57
SMARCD3-203ENST00000392811 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP31.14■■■□□ 2.57
SMARCD3-203ENST00000392811 EVA1CP58658 441 aa31.12■■■□□ 2.57
SMARCD3-203ENST00000392811 DDX54Q8TDD1 881 aaKnown RBP31.12■■■□□ 2.57
SMARCD3-203ENST00000392811 ERBB4Q15303 1308 aa31.12■■■□□ 2.57
SMARCD3-203ENST00000392811 PLBD2Q8NHP8 589 aa31.12■■■□□ 2.57
SMARCD3-203ENST00000392811 PAPPAQ13219 1627 aa31.11■■■□□ 2.57
SMARCD3-203ENST00000392811 KCPQ6ZWJ8 1503 aa31.11■■■□□ 2.57
SMARCD3-203ENST00000392811 NBPF26B4DH59 902 aa31.11■■■□□ 2.57
SMARCD3-203ENST00000392811 NBPF14Q5TI25 921 aa31.11■■■□□ 2.57
SMARCD3-203ENST00000392811 NBPF10Q6P3W6 841 aaKnown RBP31.11■■■□□ 2.57
SMARCD3-203ENST00000392811 NBPF15Q8N660 670 aa31.11■■■□□ 2.57
SMARCD3-203ENST00000392811 JARID2Q92833 1246 aaPredicted RBP31.11■■■□□ 2.57
SMARCD3-203ENST00000392811 SIL1Q9H173 461 aa31.11■■■□□ 2.57
SMARCD3-203ENST00000392811 KLHDC4Q8TBB5 520 aa31.1■■■□□ 2.57
SMARCD3-203ENST00000392811 EAF2Q96CJ1 260 aaPredicted RBP31.1■■■□□ 2.57
SMARCD3-203ENST00000392811 ATP5J2-PTCD1G3V325 749 aa31.1■■■□□ 2.57
SMARCD3-203ENST00000392811 PTCD1O75127 700 aaKnown RBP31.1■■■□□ 2.57
SMARCD3-203ENST00000392811 HSPA4P34932 840 aa31.1■■■□□ 2.57
SMARCD3-203ENST00000392811 CWC22Q9HCG8 908 aaKnown RBP31.09■■■□□ 2.57
SMARCD3-203ENST00000392811 ZGPATQ8N5A5 531 aaKnown RBP31.08■■■□□ 2.57
SMARCD3-203ENST00000392811 RAD50Q92878 1312 aa31.08■■■□□ 2.57
SMARCD3-203ENST00000392811 UBE3BQ7Z3V4 1068 aa31.08■■■□□ 2.57
SMARCD3-203ENST00000392811 MCM2P49736 904 aa31.07■■■□□ 2.56
SMARCD3-203ENST00000392811 CWC27Q6UX04 472 aaKnown RBP31.07■■■□□ 2.56
SMARCD3-203ENST00000392811 COL15A1P39059 1388 aa31.07■■■□□ 2.56
SMARCD3-203ENST00000392811 NUCB2P80303 420 aa31.07■■■□□ 2.56
SMARCD3-203ENST00000392811 CLEC17AQ6ZS10 378 aa31.07■■■□□ 2.56
SMARCD3-203ENST00000392811 LSG1Q9H089 658 aaKnown RBP31.07■■■□□ 2.56
SMARCD3-203ENST00000392811 CCDC8Q9H0W5 538 aaPredicted RBP31.07■■■□□ 2.56
SMARCD3-203ENST00000392811 TMX3Q96JJ7 454 aa31.06■■■□□ 2.56
SMARCD3-203ENST00000392811 GZF1Q9H116 711 aaPredicted RBP31.06■■■□□ 2.56
SMARCD3-203ENST00000392811 A0A087WZG4 1122 aa31.05■■■□□ 2.56
SMARCD3-203ENST00000392811 DIAPH3Q9NSV4 1193 aa31.05■■■□□ 2.56
SMARCD3-203ENST00000392811 RABL6Q3YEC7 729 aaPredicted RBP31.05■■■□□ 2.56
SMARCD3-203ENST00000392811 TLR7Q9NYK1 1049 aaKnown RBP31.05■■■□□ 2.56
SMARCD3-203ENST00000392811 CYP2E1P05181 493 aaPredicted RBP31.04■■■□□ 2.56
SMARCD3-203ENST00000392811 RFX5P48382 616 aaPredicted RBP31.04■■■□□ 2.56
SMARCD3-203ENST00000392811 TNS2Q63HR2 1409 aa31.04■■■□□ 2.56
SMARCD3-203ENST00000392811 COPRSQ9NQ92 184 aa31.04■■■□□ 2.56
SMARCD3-203ENST00000392811 A1BGP04217 495 aa31.03■■■□□ 2.56
SMARCD3-203ENST00000392811 CASP7P55210 303 aa31.03■■■□□ 2.56
SMARCD3-203ENST00000392811 EVI5LQ96CN4 794 aa31.03■■■□□ 2.56
SMARCD3-203ENST00000392811 TTLL7Q6ZT98 887 aa31.03■■■□□ 2.56
SMARCD3-203ENST00000392811 TOGARAM1Q9Y4F4 1720 aa31.02■■■□□ 2.56
SMARCD3-203ENST00000392811 KIAA1211Q6ZU35 1233 aa31.02■■■□□ 2.56
SMARCD3-203ENST00000392811 UPF3BQ9BZI7 483 aaKnown RBP31.02■■■□□ 2.56
SMARCD3-203ENST00000392811 NUP188Q5SRE5 1749 aa31.02■■■□□ 2.56
SMARCD3-203ENST00000392811 PKP1Q13835 747 aa31.02■■■□□ 2.56
SMARCD3-203ENST00000392811 RUFY2Q8WXA3 655 aa31.02■■■□□ 2.56
SMARCD3-203ENST00000392811 PTMSP20962 102 aa31.01■■■□□ 2.55
SMARCD3-203ENST00000392811 PTPN12Q05209 780 aaKnown RBP31.01■■■□□ 2.55
SMARCD3-203ENST00000392811 BAG4O95429 457 aaKnown RBP31■■■□□ 2.55
SMARCD3-203ENST00000392811 SNX14Q9Y5W7 946 aa30.99■■■□□ 2.55
SMARCD3-203ENST00000392811 CUL4AQ13619 759 aa30.98■■■□□ 2.55
SMARCD3-203ENST00000392811 BRPF3Q9ULD4 1205 aa30.98■■■□□ 2.55
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms