RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 ZC3H13Q5T200 1668 aaKnown RBP12.53□□□□□ -0.4
COL6A3-205ENST00000392004 AATKQ6ZMQ8 1374 aa12.53□□□□□ -0.4
COL6A3-205ENST00000392004 NKTRP30414 1462 aaKnown RBP12.53□□□□□ -0.4
COL6A3-205ENST00000392004 LRRC7Q96NW7 1537 aa12.53□□□□□ -0.4
COL6A3-205ENST00000392004 VPS72Q15906 364 aa12.53□□□□□ -0.4
COL6A3-205ENST00000392004 ALDH1L2Q3SY69 923 aa12.53□□□□□ -0.4
COL6A3-205ENST00000392004 RAI14Q9P0K7 980 aa12.53□□□□□ -0.4
COL6A3-205ENST00000392004 GRM1Q13255 1194 aa12.53□□□□□ -0.4
COL6A3-205ENST00000392004 RBM26Q5T8P6 1007 aaKnown RBP12.53□□□□□ -0.4
COL6A3-205ENST00000392004 PTF1AQ7RTS3 328 aa12.53□□□□□ -0.4
COL6A3-205ENST00000392004 LRRCC1Q9C099 1032 aa12.53□□□□□ -0.4
COL6A3-205ENST00000392004 CCDC158Q5M9N0 1113 aa12.53□□□□□ -0.4
COL6A3-205ENST00000392004 ZSCAN29Q8IWY8 852 aaPredicted RBP12.53□□□□□ -0.4
COL6A3-205ENST00000392004 TRIM34Q9BYJ4 488 aa12.53□□□□□ -0.4
COL6A3-205ENST00000392004 LRP2BPQ9P2M1 347 aa12.53□□□□□ -0.4
COL6A3-205ENST00000392004 BCS1LQ9Y276 419 aa12.53□□□□□ -0.4
COL6A3-205ENST00000392004 SPATA31A1Q5TZJ5 1347 aa12.52□□□□□ -0.4
COL6A3-205ENST00000392004 CT47B1P0C2W7 299 aaPredicted RBP12.52□□□□□ -0.4
COL6A3-205ENST00000392004 NBPF7P0C2Y1 421 aaPredicted RBP12.52□□□□□ -0.4
COL6A3-205ENST00000392004 L1TD1Q5T7N2 865 aaKnown RBP12.52□□□□□ -0.4
COL6A3-205ENST00000392004 ATG3Q9NT62 314 aa12.52□□□□□ -0.4
COL6A3-205ENST00000392004 ARHGAP23Q9P227 1491 aa12.52□□□□□ -0.4
COL6A3-205ENST00000392004 TECPR2O15040 1411 aa12.52□□□□□ -0.41
COL6A3-205ENST00000392004 CPSF1Q10570 1443 aaKnown RBP12.52□□□□□ -0.41
COL6A3-205ENST00000392004 FOXD4L5Q5VV16 416 aaPredicted RBP12.52□□□□□ -0.41
COL6A3-205ENST00000392004 FOXD4L4Q8WXT5 416 aaPredicted RBP12.52□□□□□ -0.41
COL6A3-205ENST00000392004 TXNRD1Q16881 649 aa12.52□□□□□ -0.41
COL6A3-205ENST00000392004 SIGLEC1Q9BZZ2 1709 aa12.51□□□□□ -0.41
COL6A3-205ENST00000392004 ADGRB1O14514 1584 aa12.51□□□□□ -0.41
COL6A3-205ENST00000392004 PNPLA6Q8IY17 1366 aa12.51□□□□□ -0.41
COL6A3-205ENST00000392004 RRP12Q5JTH9 1297 aaKnown RBP12.51□□□□□ -0.41
COL6A3-205ENST00000392004 PALLDQ8WX93 1383 aa12.51□□□□□ -0.41
COL6A3-205ENST00000392004 MCCP23508 829 aa12.51□□□□□ -0.41
COL6A3-205ENST00000392004 ATP2B2Q01814 1243 aa12.51□□□□□ -0.41
COL6A3-205ENST00000392004 FOXD4L6Q3SYB3 417 aaPredicted RBP12.51□□□□□ -0.41
COL6A3-205ENST00000392004 FOXD4L3Q6VB84 417 aaPredicted RBP12.51□□□□□ -0.41
COL6A3-205ENST00000392004 MYO5BQ9ULV0 1848 aa12.51□□□□□ -0.41
COL6A3-205ENST00000392004 LINS1Q8NG48 757 aa12.5□□□□□ -0.41
COL6A3-205ENST00000392004 IL16Q14005 1332 aa12.5□□□□□ -0.41
COL6A3-205ENST00000392004 TAF5LO75529 589 aa12.5□□□□□ -0.41
COL6A3-205ENST00000392004 SYNE4Q8N205 404 aa12.5□□□□□ -0.41
COL6A3-205ENST00000392004 SLKQ9H2G2 1235 aaPredicted RBP12.5□□□□□ -0.41
COL6A3-205ENST00000392004 MYO3AQ8NEV4 1616 aa12.5□□□□□ -0.41
COL6A3-205ENST00000392004 SLIT1O75093 1534 aa12.5□□□□□ -0.41
COL6A3-205ENST00000392004 DEPDC5O75140 1603 aa12.49□□□□□ -0.41
COL6A3-205ENST00000392004 EZH2Q15910 746 aaKnown RBP12.49□□□□□ -0.41
COL6A3-205ENST00000392004 GPR162Q16538 588 aa12.49□□□□□ -0.41
COL6A3-205ENST00000392004 ANKRD18AQ8IVF6 992 aa12.49□□□□□ -0.41
COL6A3-205ENST00000392004 PCDHB15Q9Y5E8 787 aa12.49□□□□□ -0.41
COL6A3-205ENST00000392004 QRICH2Q9H0J4 1663 aa12.49□□□□□ -0.41
COL6A3-205ENST00000392004 ECM2O94769 699 aaPredicted RBP12.49□□□□□ -0.41
COL6A3-205ENST00000392004 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.49□□□□□ -0.41
COL6A3-205ENST00000392004 ERC2O15083 957 aa12.48□□□□□ -0.41
COL6A3-205ENST00000392004 C8orf34Q49A92 452 aa12.48□□□□□ -0.41
COL6A3-205ENST00000392004 POTEAQ6S8J7 498 aa12.48□□□□□ -0.41
COL6A3-205ENST00000392004 ZNF526Q8TF50 670 aaPredicted RBP12.48□□□□□ -0.41
COL6A3-205ENST00000392004 BICC1Q9H694 974 aaKnown RBP12.48□□□□□ -0.41
COL6A3-205ENST00000392004 SPATA31A5Q5VU36 1347 aa12.48□□□□□ -0.41
COL6A3-205ENST00000392004 SPATA31A7Q8IWB4 1347 aa12.48□□□□□ -0.41
COL6A3-205ENST00000392004 KDM2BQ8NHM5 1336 aa12.48□□□□□ -0.41
COL6A3-205ENST00000392004 CCDC152Q4G0S7 254 aa12.48□□□□□ -0.41
COL6A3-205ENST00000392004 CDC5LQ99459 802 aaKnown RBP12.48□□□□□ -0.41
COL6A3-205ENST00000392004 THRAP3Q9Y2W1 955 aaKnown RBP12.48□□□□□ -0.41
COL6A3-205ENST00000392004 SH3TC1Q8TE82 1336 aa12.48□□□□□ -0.41
COL6A3-205ENST00000392004 DHX16O60231 1041 aaKnown RBP12.48□□□□□ -0.41
COL6A3-205ENST00000392004 C16orf71Q8IYS4 520 aaPredicted RBP12.48□□□□□ -0.41
COL6A3-205ENST00000392004 GNL3LQ9NVN8 582 aaKnown RBP12.48□□□□□ -0.41
COL6A3-205ENST00000392004 CRB1P82279 1406 aa12.48□□□□□ -0.41
COL6A3-205ENST00000392004 MMP10P09238 476 aa12.47□□□□□ -0.41
COL6A3-205ENST00000392004 IFIT1P09914 478 aaKnown RBP12.47□□□□□ -0.41
COL6A3-205ENST00000392004 NCLP19338 710 aaKnown RBP12.47□□□□□ -0.41
COL6A3-205ENST00000392004 TIMM10P62072 90 aa12.47□□□□□ -0.41
COL6A3-205ENST00000392004 PAXIP1Q6ZW49 1069 aaPredicted RBP12.47□□□□□ -0.41
COL6A3-205ENST00000392004 CDC42BPGQ6DT37 1551 aa12.47□□□□□ -0.41
COL6A3-205ENST00000392004 PTPRCP08575 1304 aa12.47□□□□□ -0.41
COL6A3-205ENST00000392004 FOSBP53539 338 aa12.47□□□□□ -0.41
COL6A3-205ENST00000392004 NDUFB9Q9Y6M9 179 aa12.47□□□□□ -0.41
COL6A3-205ENST00000392004 HLFQ16534 295 aa12.46□□□□□ -0.41
COL6A3-205ENST00000392004 CAVIN4Q5BKX8 364 aa12.46□□□□□ -0.41
COL6A3-205ENST00000392004 CWC27Q6UX04 472 aaKnown RBP12.46□□□□□ -0.41
COL6A3-205ENST00000392004 PLBD2Q8NHP8 589 aa12.46□□□□□ -0.41
COL6A3-205ENST00000392004 IGHDP01880 384 aa12.46□□□□□ -0.42
COL6A3-205ENST00000392004 RPAP2Q8IXW5 612 aaPredicted RBP12.46□□□□□ -0.42
COL6A3-205ENST00000392004 GJA3Q9Y6H8 435 aa12.46□□□□□ -0.42
COL6A3-205ENST00000392004 REREQ9P2R6 1566 aa12.46□□□□□ -0.42
COL6A3-205ENST00000392004 ZC3H12CQ9C0D7 883 aaKnown RBP12.45□□□□□ -0.42
COL6A3-205ENST00000392004 SSH2Q76I76 1423 aa12.45□□□□□ -0.42
COL6A3-205ENST00000392004 CHD1LQ86WJ1 897 aa12.45□□□□□ -0.42
COL6A3-205ENST00000392004 METTL22Q9BUU2 404 aaPredicted RBP12.45□□□□□ -0.42
COL6A3-205ENST00000392004 GOLIM4O00461 696 aa12.44□□□□□ -0.42
COL6A3-205ENST00000392004 ITGA6P23229 1130 aa12.44□□□□□ -0.42
COL6A3-205ENST00000392004 RTL1A6NKG5 1358 aa12.44□□□□□ -0.42
COL6A3-205ENST00000392004 USP31Q70CQ4 1352 aa12.44□□□□□ -0.42
COL6A3-205ENST00000392004 NRXN1Q9ULB1 1477 aa12.44□□□□□ -0.42
COL6A3-205ENST00000392004 ERC1Q8IUD2 1116 aa12.44□□□□□ -0.42
COL6A3-205ENST00000392004 SUCLG2Q96I99 432 aa12.44□□□□□ -0.42
COL6A3-205ENST00000392004 NAP1L5Q96NT1 182 aaPredicted RBP12.44□□□□□ -0.42
COL6A3-205ENST00000392004 CLEC11AQ9Y240 323 aa12.44□□□□□ -0.42
COL6A3-205ENST00000392004 BLMP54132 1417 aaPredicted RBP12.43□□□□□ -0.42
COL6A3-205ENST00000392004 KIF1BPQ96EK5 621 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms