RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 CLASRPQ8N2M8 674 aaKnown RBP11.68□□□□□ -0.54
COL6A3-204ENST00000392003 GIGYF1O75420 1035 aaPredicted RBP11.67□□□□□ -0.54
COL6A3-204ENST00000392003 XRCC6P12956 609 aaKnown RBP eCLIP11.67□□□□□ -0.54
COL6A3-204ENST00000392003 KDM4FA0A1W2PPD8 638 aa11.67□□□□□ -0.54
COL6A3-204ENST00000392003 MCTP1Q6DN14 999 aa11.67□□□□□ -0.54
COL6A3-204ENST00000392003 ERC1Q8IUD2 1116 aa11.67□□□□□ -0.54
COL6A3-204ENST00000392003 IFNL2Q8IZJ0 200 aa11.67□□□□□ -0.54
COL6A3-204ENST00000392003 OVOS2A0A0G2JMS6 1433 aa11.66□□□□□ -0.54
COL6A3-204ENST00000392003 NCLP19338 710 aaKnown RBP11.66□□□□□ -0.54
COL6A3-204ENST00000392003 MST1RQ04912 1400 aa11.66□□□□□ -0.54
COL6A3-204ENST00000392003 SPATA31A3Q5VYP0 1347 aa11.66□□□□□ -0.54
COL6A3-204ENST00000392003 MED1Q15648 1581 aaPredicted RBP11.66□□□□□ -0.54
COL6A3-204ENST00000392003 EPB41L2O43491 1005 aaKnown RBP11.66□□□□□ -0.54
COL6A3-204ENST00000392003 SLC39A6Q13433 755 aa11.66□□□□□ -0.54
COL6A3-204ENST00000392003 CLEC17AQ6ZS10 378 aa11.66□□□□□ -0.54
COL6A3-204ENST00000392003 GRPEL1Q9HAV7 217 aa11.66□□□□□ -0.54
COL6A3-204ENST00000392003 SLIT3O75094 1523 aa11.66□□□□□ -0.54
COL6A3-204ENST00000392003 LMO7Q8WWI1 1683 aa11.65□□□□□ -0.54
COL6A3-204ENST00000392003 PHRF1Q9P1Y6 1649 aaKnown RBP11.65□□□□□ -0.54
COL6A3-204ENST00000392003 GLRX3O76003 335 aaKnown RBP11.65□□□□□ -0.54
COL6A3-204ENST00000392003 MAP4K4O95819 1239 aaPredicted RBP11.65□□□□□ -0.54
COL6A3-204ENST00000392003 CABP4P57796 275 aa11.65□□□□□ -0.54
COL6A3-204ENST00000392003 IFIT2P09913 472 aaKnown RBP11.65□□□□□ -0.54
COL6A3-204ENST00000392003 NEXNQ0ZGT2 675 aa11.65□□□□□ -0.54
COL6A3-204ENST00000392003 PPP4R3BQ5MIZ7 849 aa11.65□□□□□ -0.54
COL6A3-204ENST00000392003 NFATC2IPQ8NCF5 419 aa11.65□□□□□ -0.54
COL6A3-204ENST00000392003 RGS22Q8NE09 1264 aa11.65□□□□□ -0.54
COL6A3-204ENST00000392003 RUFY2Q8WXA3 655 aa11.65□□□□□ -0.54
COL6A3-204ENST00000392003 TMX3Q96JJ7 454 aa11.65□□□□□ -0.54
COL6A3-204ENST00000392003 ADCY9O60503 1353 aa11.65□□□□□ -0.54
COL6A3-204ENST00000392003 N4BP2Q86UW6 1770 aaPredicted RBP11.65□□□□□ -0.54
COL6A3-204ENST00000392003 RGPD2P0DJD1 1756 aa11.65□□□□□ -0.55
COL6A3-204ENST00000392003 KDM3BQ7LBC6 1761 aa11.65□□□□□ -0.55
COL6A3-204ENST00000392003 CLCN1P35523 988 aa11.65□□□□□ -0.55
COL6A3-204ENST00000392003 RIC3Q7Z5B4 369 aa11.65□□□□□ -0.55
COL6A3-204ENST00000392003 UNC5CLQ8IV45 518 aa11.65□□□□□ -0.55
COL6A3-204ENST00000392003 ZGPATQ8N5A5 531 aaKnown RBP11.65□□□□□ -0.55
COL6A3-204ENST00000392003 DDX21Q9NR30 783 aaKnown RBP eCLIP11.65□□□□□ -0.55
COL6A3-204ENST00000392003 KLHL40Q2TBA0 621 aa11.64□□□□□ -0.55
COL6A3-204ENST00000392003 NOL8Q76FK4 1167 aaKnown RBP11.64□□□□□ -0.55
COL6A3-204ENST00000392003 LINS1Q8NG48 757 aa11.64□□□□□ -0.55
COL6A3-204ENST00000392003 DDX54Q8TDD1 881 aaKnown RBP11.64□□□□□ -0.55
COL6A3-204ENST00000392003 ANP32BQ92688 251 aaKnown RBP11.64□□□□□ -0.55
COL6A3-204ENST00000392003 DIAPH3Q9NSV4 1193 aa11.64□□□□□ -0.55
COL6A3-204ENST00000392003 TTC41PQ6P2S7 1318 aa11.64□□□□□ -0.55
COL6A3-204ENST00000392003 PXDNQ92626 1479 aa11.64□□□□□ -0.55
COL6A3-204ENST00000392003 MYL6BP14649 208 aa11.63□□□□□ -0.55
COL6A3-204ENST00000392003 G3BP1Q13283 466 aaKnown RBP eCLIP11.63□□□□□ -0.55
COL6A3-204ENST00000392003 A0A0G2JS52 829 aa11.63□□□□□ -0.55
COL6A3-204ENST00000392003 MTX1Q13505 466 aa11.63□□□□□ -0.55
COL6A3-204ENST00000392003 DCCP43146 1447 aa11.63□□□□□ -0.55
COL6A3-204ENST00000392003 TNS3Q68CZ2 1445 aa11.63□□□□□ -0.55
COL6A3-204ENST00000392003 GRM8O00222 908 aa11.63□□□□□ -0.55
COL6A3-204ENST00000392003 PROSER3Q2NL68 480 aa11.63□□□□□ -0.55
COL6A3-204ENST00000392003 LARP1Q6PKG0 1096 aaKnown RBP11.63□□□□□ -0.55
COL6A3-204ENST00000392003 CHMP4CQ96CF2 233 aa11.63□□□□□ -0.55
COL6A3-204ENST00000392003 CWF19L2Q2TBE0 894 aaKnown RBP11.62□□□□□ -0.55
COL6A3-204ENST00000392003 PI4K2BQ8TCG2 481 aa11.62□□□□□ -0.55
COL6A3-204ENST00000392003 PALD1Q9ULE6 856 aa11.62□□□□□ -0.55
COL6A3-204ENST00000392003 KIF1AQ12756 1690 aa11.62□□□□□ -0.55
COL6A3-204ENST00000392003 PHKG2P15735 406 aa11.62□□□□□ -0.55
COL6A3-204ENST00000392003 ZNF790Q6PG37 636 aa11.62□□□□□ -0.55
COL6A3-204ENST00000392003 UPF3BQ9BZI7 483 aaKnown RBP11.62□□□□□ -0.55
COL6A3-204ENST00000392003 ECHDC1Q9NTX5 307 aa11.62□□□□□ -0.55
COL6A3-204ENST00000392003 CYP2E1P05181 493 aaPredicted RBP11.62□□□□□ -0.55
COL6A3-204ENST00000392003 PANK2Q9BZ23 570 aa11.62□□□□□ -0.55
COL6A3-204ENST00000392003 SGSM2O43147 1006 aa11.61□□□□□ -0.55
COL6A3-204ENST00000392003 TRIM44Q96DX7 344 aaPredicted RBP11.61□□□□□ -0.55
COL6A3-204ENST00000392003 INTS4Q96HW7 963 aaKnown RBP11.61□□□□□ -0.55
COL6A3-204ENST00000392003 DCAF5Q96JK2 942 aa11.61□□□□□ -0.55
COL6A3-204ENST00000392003 SLC52A2Q9HAB3 445 aa11.61□□□□□ -0.55
COL6A3-204ENST00000392003 PRAMEF22A3QJZ6 481 aa11.61□□□□□ -0.55
COL6A3-204ENST00000392003 MYCNP04198 464 aaPredicted RBP11.61□□□□□ -0.55
COL6A3-204ENST00000392003 FOXD4L5Q5VV16 416 aaPredicted RBP11.61□□□□□ -0.55
COL6A3-204ENST00000392003 CWC27Q6UX04 472 aaKnown RBP11.61□□□□□ -0.55
COL6A3-204ENST00000392003 FOXD4L4Q8WXT5 416 aaPredicted RBP11.61□□□□□ -0.55
COL6A3-204ENST00000392003 BCCIPQ9P287 314 aaKnown RBP eCLIP11.61□□□□□ -0.55
COL6A3-204ENST00000392003 PRPF40AO75400 957 aaKnown RBP11.61□□□□□ -0.55
COL6A3-204ENST00000392003 HSPA4P34932 840 aa11.61□□□□□ -0.55
COL6A3-204ENST00000392003 AACSQ86V21 672 aa11.61□□□□□ -0.55
COL6A3-204ENST00000392003 ZCRB1Q8TBF4 217 aaKnown RBP11.61□□□□□ -0.55
COL6A3-204ENST00000392003 PKP1Q13835 747 aa11.6□□□□□ -0.55
COL6A3-204ENST00000392003 ZBTB9Q96C00 473 aa11.6□□□□□ -0.55
COL6A3-204ENST00000392003 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.6□□□□□ -0.55
COL6A3-204ENST00000392003 RAD50Q92878 1312 aa11.6□□□□□ -0.55
COL6A3-204ENST00000392003 HEG1Q9ULI3 1381 aa11.6□□□□□ -0.55
COL6A3-204ENST00000392003 CUL4AQ13619 759 aa11.6□□□□□ -0.55
COL6A3-204ENST00000392003 PA2G4Q9UQ80 394 aaKnown RBP11.6□□□□□ -0.55
COL6A3-204ENST00000392003 ZNF330Q9Y3S2 320 aaPredicted RBP11.6□□□□□ -0.55
COL6A3-204ENST00000392003 USP42Q9H9J4 1324 aaKnown RBP11.59□□□□□ -0.55
COL6A3-204ENST00000392003 AK9Q5TCS8 1911 aa11.59□□□□□ -0.55
COL6A3-204ENST00000392003 CAVIN1Q6NZI2 390 aaKnown RBP11.59□□□□□ -0.55
COL6A3-204ENST00000392003 HIP1O00291 1037 aa11.59□□□□□ -0.55
COL6A3-204ENST00000392003 KCNJ4P48050 445 aa11.59□□□□□ -0.55
COL6A3-204ENST00000392003 SUCLG2Q96I99 432 aa11.59□□□□□ -0.55
COL6A3-204ENST00000392003 FMNL2Q96PY5 1086 aa11.59□□□□□ -0.55
COL6A3-204ENST00000392003 LMBRD1Q9NUN5 540 aa11.59□□□□□ -0.55
COL6A3-204ENST00000392003 SNRPA1P09661 255 aaKnown RBP11.58□□□□□ -0.56
COL6A3-204ENST00000392003 SMAP1Q8IYB5 467 aaPredicted RBP11.58□□□□□ -0.56
COL6A3-204ENST00000392003 XAGE3Q8WTP9 111 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms