RNA–Protein interactions for RNA: ENST00000381150.5

SDC1-202, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SDC1, Length 3,291 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-202ENST00000381150 DIAPH3Q9NSV4 1193 aa16.61■□□□□ 0.25
SDC1-202ENST00000381150 NAA30Q147X3 362 aaPredicted RBP16.6■□□□□ 0.25
SDC1-202ENST00000381150 STK31Q9BXU1 1019 aa16.6■□□□□ 0.25
SDC1-202ENST00000381150 NOL12Q9UGY1 213 aaKnown RBP eCLIP16.6■□□□□ 0.257e-7■□□□□ 9.8
SDC1-202ENST00000381150 V9GYY5 206 aaPredicted RBP16.6■□□□□ 0.25
SDC1-202ENST00000381150 FGD1P98174 961 aa16.6■□□□□ 0.25
SDC1-202ENST00000381150 TRERF1Q96PN7 1200 aa16.6■□□□□ 0.25
SDC1-202ENST00000381150 ERICH4A6NGS2 130 aa16.6■□□□□ 0.25
SDC1-202ENST00000381150 ORAI2Q96SN7 254 aa16.6■□□□□ 0.25
SDC1-202ENST00000381150 KCNH5Q8NCM2 988 aa16.59■□□□□ 0.25
SDC1-202ENST00000381150 KDM3BQ7LBC6 1761 aa16.59■□□□□ 0.25
SDC1-202ENST00000381150 LGR6Q9HBX8 967 aa16.59■□□□□ 0.25
SDC1-202ENST00000381150 IL1RAPL2Q9NP60 686 aa16.59■□□□□ 0.25
SDC1-202ENST00000381150 NCAPD2Q15021 1401 aa16.59■□□□□ 0.25
SDC1-202ENST00000381150 SLIT3O75094 1523 aa16.59■□□□□ 0.25
SDC1-202ENST00000381150 LMO7Q8WWI1 1683 aa16.59■□□□□ 0.25
SDC1-202ENST00000381150 CCDC183Q5T5S1 534 aa16.58■□□□□ 0.25
SDC1-202ENST00000381150 SRCIN1Q9C0H9 1055 aa16.58■□□□□ 0.25
SDC1-202ENST00000381150 CPA1P15085 419 aa16.58■□□□□ 0.24
SDC1-202ENST00000381150 TRPM3Q9HCF6 1732 aaPredicted RBP16.57■□□□□ 0.24
SDC1-202ENST00000381150 WDR33Q9C0J8 1336 aaKnown RBP16.57■□□□□ 0.24
SDC1-202ENST00000381150 GNAI2P04899 355 aa16.57■□□□□ 0.24
SDC1-202ENST00000381150 PTGS1P23219 599 aa16.57■□□□□ 0.24
SDC1-202ENST00000381150 PDE1AP54750 535 aa16.57■□□□□ 0.24
SDC1-202ENST00000381150 FERMT3Q86UX7 667 aa16.57■□□□□ 0.24
SDC1-202ENST00000381150 ARHGEF25Q86VW2 580 aa16.57■□□□□ 0.24
SDC1-202ENST00000381150 GTPBP4Q9BZE4 634 aaKnown RBP16.57■□□□□ 0.24
SDC1-202ENST00000381150 OSBPL3Q9H4L5 887 aa16.57■□□□□ 0.24
SDC1-202ENST00000381150 HMMRO75330 724 aa16.57■□□□□ 0.24
SDC1-202ENST00000381150 FKBP5Q13451 457 aaPredicted RBP16.57■□□□□ 0.24
SDC1-202ENST00000381150 UTP14CQ5TAP6 766 aaKnown RBP16.57■□□□□ 0.24
SDC1-202ENST00000381150 TUBGCP6Q96RT7 1819 aa16.57■□□□□ 0.24
SDC1-202ENST00000381150 SALL3Q9BXA9 1300 aa16.57■□□□□ 0.24
SDC1-202ENST00000381150 KDM4AO75164 1064 aa16.57■□□□□ 0.24
SDC1-202ENST00000381150 FAM184AQ8NB25 1140 aa16.57■□□□□ 0.24
SDC1-202ENST00000381150 PXDNLA1KZ92 1463 aa16.56■□□□□ 0.24
SDC1-202ENST00000381150 CKAP2LQ8IYA6 745 aa16.56■□□□□ 0.24
SDC1-202ENST00000381150 LRRC59Q96AG4 307 aaKnown RBP16.56■□□□□ 0.24
SDC1-202ENST00000381150 GCP02774 474 aa16.56■□□□□ 0.24
SDC1-202ENST00000381150 EIF4A1P60842 406 aaKnown RBP16.56■□□□□ 0.24
SDC1-202ENST00000381150 LRMPQ12912 555 aa16.55■□□□□ 0.24
SDC1-202ENST00000381150 PLCD3Q8N3E9 789 aa16.55■□□□□ 0.24
SDC1-202ENST00000381150 USP44Q9H0E7 712 aa16.55■□□□□ 0.24
SDC1-202ENST00000381150 SMC3Q9UQE7 1217 aa16.55■□□□□ 0.24
SDC1-202ENST00000381150 PNMA6EA0A0J9YXQ4 647 aa16.55■□□□□ 0.24
SDC1-202ENST00000381150 ATP8B2P98198 1209 aa16.55■□□□□ 0.24
SDC1-202ENST00000381150 GOLGA6L4A6NEF3 574 aa16.55■□□□□ 0.24
SDC1-202ENST00000381150 GOLGA6L6A8MZA4 724 aa16.55■□□□□ 0.24
SDC1-202ENST00000381150 LETM1O95202 739 aaPredicted RBP16.55■□□□□ 0.24
SDC1-202ENST00000381150 PHAXQ9H814 394 aaKnown RBP16.55■□□□□ 0.24
SDC1-202ENST00000381150 GNAI3P08754 354 aa16.54■□□□□ 0.24
SDC1-202ENST00000381150 ESYT1Q9BSJ8 1104 aa16.54■□□□□ 0.24
SDC1-202ENST00000381150 CAMTA1Q9Y6Y1 1673 aa16.54■□□□□ 0.24
SDC1-202ENST00000381150 MX1P20591 662 aa16.54■□□□□ 0.24
SDC1-202ENST00000381150 DNM1Q05193 864 aaKnown RBP16.54■□□□□ 0.24
SDC1-202ENST00000381150 FBXW7Q969H0 707 aa16.54■□□□□ 0.24
SDC1-202ENST00000381150 KCNQ3O43525 872 aa16.53■□□□□ 0.24
SDC1-202ENST00000381150 MCM2P49736 904 aa16.53■□□□□ 0.24
SDC1-202ENST00000381150 CCDC186Q7Z3E2 898 aa16.53■□□□□ 0.24
SDC1-202ENST00000381150 NUTM1Q86Y26 1132 aa16.53■□□□□ 0.24
SDC1-202ENST00000381150 TRIM5Q9C035 493 aa16.53■□□□□ 0.24
SDC1-202ENST00000381150 HDGFL1Q5TGJ6 251 aa16.53■□□□□ 0.24
SDC1-202ENST00000381150 FAM173BQ6P4H8 233 aa16.53■□□□□ 0.24
SDC1-202ENST00000381150 KIF20AO95235 890 aa16.53■□□□□ 0.24
SDC1-202ENST00000381150 TPD52L1Q16890 204 aaPredicted RBP16.53■□□□□ 0.24
SDC1-202ENST00000381150 LUZP1Q86V48 1076 aa16.53■□□□□ 0.24
SDC1-202ENST00000381150 AKAP4Q5JQC9 854 aa16.52■□□□□ 0.24
SDC1-202ENST00000381150 CCDC83Q8IWF9 413 aa16.52■□□□□ 0.24
SDC1-202ENST00000381150 HOXB7P09629 217 aa16.52■□□□□ 0.23
SDC1-202ENST00000381150 KCNJ4P48050 445 aa16.52■□□□□ 0.23
SDC1-202ENST00000381150 AXIN2Q9Y2T1 843 aa16.52■□□□□ 0.23
SDC1-202ENST00000381150 MST1RQ04912 1400 aa16.52■□□□□ 0.23
SDC1-202ENST00000381150 PXDNQ92626 1479 aa16.51■□□□□ 0.23
SDC1-202ENST00000381150 TNNT1P13805 278 aa16.51■□□□□ 0.23
SDC1-202ENST00000381150 UNC5CLQ8IV45 518 aa16.51■□□□□ 0.23
SDC1-202ENST00000381150 KCNF1Q9H3M0 494 aa16.51■□□□□ 0.23
SDC1-202ENST00000381150 AP5Z1O43299 807 aa16.51■□□□□ 0.23
SDC1-202ENST00000381150 NRBP1Q9UHY1 535 aa16.51■□□□□ 0.23
SDC1-202ENST00000381150 LRRFIP2Q9Y608 721 aaKnown RBP16.51■□□□□ 0.23
SDC1-202ENST00000381150 PDE4CQ08493 712 aa16.5■□□□□ 0.23
SDC1-202ENST00000381150 UVSSAQ2YD98 709 aa16.5■□□□□ 0.23
SDC1-202ENST00000381150 RGPD5Q99666 1765 aa16.5■□□□□ 0.23
SDC1-202ENST00000381150 STX6O43752 255 aa16.5■□□□□ 0.23
SDC1-202ENST00000381150 SYT1P21579 422 aa16.5■□□□□ 0.23
SDC1-202ENST00000381150 KIAA1524Q8TCG1 905 aa16.5■□□□□ 0.23
SDC1-202ENST00000381150 SPG7Q9UQ90 795 aa16.5■□□□□ 0.23
SDC1-202ENST00000381150 C1orf167Q5SNV9 1468 aa16.5■□□□□ 0.23
SDC1-202ENST00000381150 PLEKHO1Q53GL0 409 aaPredicted RBP16.49■□□□□ 0.23
SDC1-202ENST00000381150 ZNF530Q6P9A1 599 aaPredicted RBP16.49■□□□□ 0.23
SDC1-202ENST00000381150 MPRIPQ6WCQ1 1025 aa16.49■□□□□ 0.23
SDC1-202ENST00000381150 CCDC112Q8NEF3 446 aa16.49■□□□□ 0.23
SDC1-202ENST00000381150 LRRCC1Q9C099 1032 aa16.49■□□□□ 0.23
SDC1-202ENST00000381150 HEG1Q9ULI3 1381 aa16.49■□□□□ 0.23
SDC1-202ENST00000381150 SIPA1L3O60292 1781 aaPredicted RBP16.49■□□□□ 0.23
SDC1-202ENST00000381150 UBE2HP62256 183 aa16.49■□□□□ 0.23
SDC1-202ENST00000381150 AMOTQ4VCS5 1084 aa16.49■□□□□ 0.23
SDC1-202ENST00000381150 ALS2Q96Q42 1657 aa16.49■□□□□ 0.23
SDC1-202ENST00000381150 ADAMTS7Q9UKP4 1686 aa16.49■□□□□ 0.23
SDC1-202ENST00000381150 ZSCAN22P10073 491 aaPredicted RBP16.48■□□□□ 0.23
SDC1-202ENST00000381150 CWC27Q6UX04 472 aaKnown RBP16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 80.9 ms