RNA–Protein interactions for RNA: ENST00000379340.9

POLR2J3-201, Transcript of RNA polymerase II subunit J3, humanhuman

TSL 1 (best)

Gene POLR2J3, Length 1,598 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
POLR2J3-201ENST00000379340 DDX21Q9NR30 783 aaKnown RBP eCLIP12.9□□□□□ -0.34
POLR2J3-201ENST00000379340 C5P01031 1676 aa12.9□□□□□ -0.34
POLR2J3-201ENST00000379340 SALL3Q9BXA9 1300 aa12.9□□□□□ -0.34
POLR2J3-201ENST00000379340 LAMB4A4D0S4 1761 aa12.9□□□□□ -0.34
POLR2J3-201ENST00000379340 CASZ1Q86V15 1759 aa12.9□□□□□ -0.34
POLR2J3-201ENST00000379340 PNMA6EA0A0J9YXQ4 647 aa12.9□□□□□ -0.35
POLR2J3-201ENST00000379340 SMARCA5O60264 1052 aaPredicted RBP12.9□□□□□ -0.35
POLR2J3-201ENST00000379340 PDE1AP54750 535 aa12.9□□□□□ -0.35
POLR2J3-201ENST00000379340 HSP90AB4PQ58FF6 505 aa12.9□□□□□ -0.35
POLR2J3-201ENST00000379340 ZNF790Q6PG37 636 aa12.9□□□□□ -0.35
POLR2J3-201ENST00000379340 WDR17Q8IZU2 1322 aa12.89□□□□□ -0.35
POLR2J3-201ENST00000379340 SDSP20132 328 aa12.89□□□□□ -0.35
POLR2J3-201ENST00000379340 ANTXR1Q9H6X2 564 aa12.89□□□□□ -0.35
POLR2J3-201ENST00000379340 STAP2Q9UGK3 403 aa12.89□□□□□ -0.35
POLR2J3-201ENST00000379340 EXOC6BQ9Y2D4 811 aa12.89□□□□□ -0.35
POLR2J3-201ENST00000379340 APBB1O00213 710 aa12.88□□□□□ -0.35
POLR2J3-201ENST00000379340 ZBTB7AO95365 584 aa12.88□□□□□ -0.35
POLR2J3-201ENST00000379340 MTX1Q13505 466 aa12.88□□□□□ -0.35
POLR2J3-201ENST00000379340 OTUD7AQ8TE49 926 aaPredicted RBP12.88□□□□□ -0.35
POLR2J3-201ENST00000379340 DCAF8L1A6NGE4 600 aa12.87□□□□□ -0.35
POLR2J3-201ENST00000379340 REC8O95072 547 aa12.87□□□□□ -0.35
POLR2J3-201ENST00000379340 MX1P20591 662 aa12.87□□□□□ -0.35
POLR2J3-201ENST00000379340 PTGER2P43116 358 aa12.87□□□□□ -0.35
POLR2J3-201ENST00000379340 EVA1CP58658 441 aa12.87□□□□□ -0.35
POLR2J3-201ENST00000379340 PCDH11XQ9BZA7 1347 aa12.87□□□□□ -0.35
POLR2J3-201ENST00000379340 PCDH11YQ9BZA8 1340 aa12.87□□□□□ -0.35
POLR2J3-201ENST00000379340 COL5A2P05997 1499 aaPredicted RBP12.87□□□□□ -0.35
POLR2J3-201ENST00000379340 DEKP35659 375 aaKnown RBP12.86□□□□□ -0.35
POLR2J3-201ENST00000379340 PPP1R42Q7Z4L9 355 aa12.86□□□□□ -0.35
POLR2J3-201ENST00000379340 TTC5Q8N0Z6 440 aa12.86□□□□□ -0.35
POLR2J3-201ENST00000379340 LINS1Q8NG48 757 aa12.86□□□□□ -0.35
POLR2J3-201ENST00000379340 KIF1BPQ96EK5 621 aa12.86□□□□□ -0.35
POLR2J3-201ENST00000379340 MAP3K2Q9Y2U5 619 aa12.86□□□□□ -0.35
POLR2J3-201ENST00000379340 SNRPA1P09661 255 aaKnown RBP12.86□□□□□ -0.35
POLR2J3-201ENST00000379340 PROM2Q8N271 834 aa12.86□□□□□ -0.35
POLR2J3-201ENST00000379340 FMNL2Q96PY5 1086 aa12.86□□□□□ -0.35
POLR2J3-201ENST00000379340 KIF2CQ99661 725 aa12.86□□□□□ -0.35
POLR2J3-201ENST00000379340 SLKQ9H2G2 1235 aaPredicted RBP12.86□□□□□ -0.35
POLR2J3-201ENST00000379340 CHMP5Q9NZZ3 219 aa12.86□□□□□ -0.35
POLR2J3-201ENST00000379340 UTYO14607 1347 aa12.85□□□□□ -0.35
POLR2J3-201ENST00000379340 ERC2O15083 957 aa12.85□□□□□ -0.35
POLR2J3-201ENST00000379340 CYP27B1O15528 508 aa12.85□□□□□ -0.35
POLR2J3-201ENST00000379340 SRGAP3O43295 1099 aa12.85□□□□□ -0.35
POLR2J3-201ENST00000379340 NBPF7P0C2Y1 421 aaPredicted RBP12.85□□□□□ -0.35
POLR2J3-201ENST00000379340 RABEP1Q15276 862 aa12.85□□□□□ -0.35
POLR2J3-201ENST00000379340 NFATC2IPQ8NCF5 419 aa12.85□□□□□ -0.35
POLR2J3-201ENST00000379340 USP26Q9BXU7 913 aa12.85□□□□□ -0.35
POLR2J3-201ENST00000379340 C9orf78Q9NZ63 289 aaPredicted RBP12.85□□□□□ -0.35
POLR2J3-201ENST00000379340 ATF5Q9Y2D1 282 aaPredicted RBP12.85□□□□□ -0.35
POLR2J3-201ENST00000379340 ERBB4Q15303 1308 aa12.85□□□□□ -0.35
POLR2J3-201ENST00000379340 PAPPAQ13219 1627 aa12.84□□□□□ -0.35
POLR2J3-201ENST00000379340 UBR2Q8IWV8 1755 aa12.84□□□□□ -0.35
POLR2J3-201ENST00000379340 EPB41L2O43491 1005 aaKnown RBP12.84□□□□□ -0.35
POLR2J3-201ENST00000379340 SURF6O75683 361 aaKnown RBP12.84□□□□□ -0.35
POLR2J3-201ENST00000379340 ANXA1P04083 346 aa12.84□□□□□ -0.35
POLR2J3-201ENST00000379340 ADRA2BP18089 450 aa12.84□□□□□ -0.35
POLR2J3-201ENST00000379340 CABP4P57796 275 aa12.84□□□□□ -0.35
POLR2J3-201ENST00000379340 PDIA6Q15084 440 aa12.84□□□□□ -0.35
POLR2J3-201ENST00000379340 PROSER3Q2NL68 480 aa12.84□□□□□ -0.35
POLR2J3-201ENST00000379340 CARD10Q9BWT7 1032 aa12.84□□□□□ -0.35
POLR2J3-201ENST00000379340 CIZ1Q9ULV3 898 aaPredicted RBP12.84□□□□□ -0.35
POLR2J3-201ENST00000379340 SBF2Q86WG5 1849 aa12.83□□□□□ -0.36
POLR2J3-201ENST00000379340 ERVV-2B6SEH9 535 aa12.83□□□□□ -0.36
POLR2J3-201ENST00000379340 C1QTNF8P60827 252 aa12.83□□□□□ -0.36
POLR2J3-201ENST00000379340 NEXNQ0ZGT2 675 aa12.83□□□□□ -0.36
POLR2J3-201ENST00000379340 TOM1L2Q6ZVM7 507 aa12.83□□□□□ -0.36
POLR2J3-201ENST00000379340 ERC1Q8IUD2 1116 aa12.83□□□□□ -0.36
POLR2J3-201ENST00000379340 IL27Q8NEV9 243 aa12.83□□□□□ -0.36
POLR2J3-201ENST00000379340 RHPN1Q8TCX5 695 aa12.83□□□□□ -0.36
POLR2J3-201ENST00000379340 AK9Q5TCS8 1911 aa12.83□□□□□ -0.36
POLR2J3-201ENST00000379340 PRAMEF22A3QJZ6 481 aa12.82□□□□□ -0.36
POLR2J3-201ENST00000379340 SLC39A6Q13433 755 aa12.82□□□□□ -0.36
POLR2J3-201ENST00000379340 IFFO2Q5TF58 517 aa12.82□□□□□ -0.36
POLR2J3-201ENST00000379340 ZCRB1Q8TBF4 217 aaKnown RBP12.82□□□□□ -0.36
POLR2J3-201ENST00000379340 FHDC1Q9C0D6 1143 aaPredicted RBP12.82□□□□□ -0.36
POLR2J3-201ENST00000379340 SHANK3Q9BYB0 1731 aa12.82□□□□□ -0.36
POLR2J3-201ENST00000379340 UTRNP46939 3433 aa12.82□□□□□ -0.36
POLR2J3-201ENST00000379340 RGPD3A6NKT7 1758 aaPredicted RBP12.82□□□□□ -0.36
POLR2J3-201ENST00000379340 RGPD4Q7Z3J3 1758 aa12.82□□□□□ -0.36
POLR2J3-201ENST00000379340 K7ELQ4 463 aaPredicted RBP12.81□□□□□ -0.36
POLR2J3-201ENST00000379340 GRM8O00222 908 aa12.81□□□□□ -0.36
POLR2J3-201ENST00000379340 PLSCR1O15162 318 aa12.81□□□□□ -0.36
POLR2J3-201ENST00000379340 FRAT2O75474 233 aaPredicted RBP12.81□□□□□ -0.36
POLR2J3-201ENST00000379340 IL2RBP14784 551 aa12.81□□□□□ -0.36
POLR2J3-201ENST00000379340 NKX1-1Q15270 411 aaPredicted RBP12.81□□□□□ -0.36
POLR2J3-201ENST00000379340 RIC3Q7Z5B4 369 aa12.81□□□□□ -0.36
POLR2J3-201ENST00000379340 ZNF496Q96IT1 587 aaPredicted RBP12.81□□□□□ -0.36
POLR2J3-201ENST00000379340 SYT17Q9BSW7 474 aa12.81□□□□□ -0.36
POLR2J3-201ENST00000379340 USP42Q9H9J4 1324 aaKnown RBP12.81□□□□□ -0.36
POLR2J3-201ENST00000379340 BCL11BQ9C0K0 894 aaPredicted RBP12.81□□□□□ -0.36
POLR2J3-201ENST00000379340 TTC41PQ6P2S7 1318 aa12.81□□□□□ -0.36
POLR2J3-201ENST00000379340 COL15A1P39059 1388 aa12.81□□□□□ -0.36
POLR2J3-201ENST00000379340 ARFGEF2Q9Y6D5 1785 aa12.8□□□□□ -0.36
POLR2J3-201ENST00000379340 MCCP23508 829 aa12.8□□□□□ -0.36
POLR2J3-201ENST00000379340 AFDNP55196 1824 aaKnown RBP12.8□□□□□ -0.36
POLR2J3-201ENST00000379340 METTL22Q9BUU2 404 aaPredicted RBP12.8□□□□□ -0.36
POLR2J3-201ENST00000379340 BCL11AQ9H165 835 aa12.8□□□□□ -0.36
POLR2J3-201ENST00000379340 DDIT3P35638 169 aa12.79□□□□□ -0.36
POLR2J3-201ENST00000379340 XAGE3Q8WTP9 111 aa12.79□□□□□ -0.36
POLR2J3-201ENST00000379340 SGIP1Q9BQI5 828 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms