RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 CD2APQ9Y5K6 639 aa17.3■□□□□ 0.36
VPS28-202ENST00000377348 SERPINB2P05120 415 aa17.29■□□□□ 0.36
VPS28-202ENST00000377348 AIMP1Q12904 312 aaKnown RBP17.29■□□□□ 0.36
VPS28-202ENST00000377348 KIF6Q6ZMV9 814 aa17.29■□□□□ 0.36
VPS28-202ENST00000377348 XAGE3Q8WTP9 111 aa17.29■□□□□ 0.36
VPS28-202ENST00000377348 ZBTB3Q9H5J0 574 aa17.29■□□□□ 0.36
VPS28-202ENST00000377348 C10orf71Q711Q0 1435 aa17.29■□□□□ 0.36
VPS28-202ENST00000377348 MAP3K15Q6ZN16 1313 aa17.28■□□□□ 0.36
VPS28-202ENST00000377348 EXOSC9Q06265 439 aaKnown RBP17.28■□□□□ 0.36
VPS28-202ENST00000377348 COPS6Q7L5N1 327 aa17.28■□□□□ 0.36
VPS28-202ENST00000377348 TCERG1O14776 1098 aaKnown RBP17.27■□□□□ 0.36
VPS28-202ENST00000377348 GOLGA2Q08379 1002 aa17.27■□□□□ 0.36
VPS28-202ENST00000377348 TWISTNBQ3B726 338 aaPredicted RBP17.27■□□□□ 0.36
VPS28-202ENST00000377348 CLEC4GQ6UXB4 293 aa17.27■□□□□ 0.36
VPS28-202ENST00000377348 DBF4Q9UBU7 674 aaPredicted RBP17.27■□□□□ 0.36
VPS28-202ENST00000377348 ZNF652Q9Y2D9 606 aa17.27■□□□□ 0.36
VPS28-202ENST00000377348 ERVV-1B6SEH8 477 aa17.26■□□□□ 0.35
VPS28-202ENST00000377348 CCDC24Q8N4L8 307 aa17.26■□□□□ 0.35
VPS28-202ENST00000377348 SETDB2Q96T68 719 aa17.26■□□□□ 0.35
VPS28-202ENST00000377348 MYH16Q9H6N6 1097 aa17.26■□□□□ 0.35
VPS28-202ENST00000377348 WWC3Q9ULE0 1092 aa17.26■□□□□ 0.35
VPS28-202ENST00000377348 CARMIL3Q8ND23 1372 aa17.26■□□□□ 0.35
VPS28-202ENST00000377348 CDCA7LQ96GN5 454 aa17.25■□□□□ 0.35
VPS28-202ENST00000377348 PHAXQ9H814 394 aaKnown RBP17.25■□□□□ 0.35
VPS28-202ENST00000377348 NIP7Q9Y221 180 aaKnown RBP eCLIP17.25■□□□□ 0.35
VPS28-202ENST00000377348 AFDNP55196 1824 aaKnown RBP17.25■□□□□ 0.35
VPS28-202ENST00000377348 FAM177BA6PVY3 158 aa17.24■□□□□ 0.35
VPS28-202ENST00000377348 CCDC30Q5VVM6 783 aa17.24■□□□□ 0.35
VPS28-202ENST00000377348 PELP1Q8IZL8 1130 aaKnown RBP17.24■□□□□ 0.35
VPS28-202ENST00000377348 HYPKQ9NX55 129 aa17.24■□□□□ 0.35
VPS28-202ENST00000377348 NRXN2Q9P2S2 1712 aa17.24■□□□□ 0.35
VPS28-202ENST00000377348 PXDNLA1KZ92 1463 aa17.24■□□□□ 0.35
VPS28-202ENST00000377348 A0A0G2JLW4 131 aa17.23■□□□□ 0.35
VPS28-202ENST00000377348 RGL2O15211 777 aa17.23■□□□□ 0.35
VPS28-202ENST00000377348 VAMP4O75379 141 aa17.23■□□□□ 0.35
VPS28-202ENST00000377348 GPTP24298 496 aa17.23■□□□□ 0.35
VPS28-202ENST00000377348 PRR5LQ6MZQ0 368 aa17.23■□□□□ 0.35
VPS28-202ENST00000377348 GIGYF2Q6Y7W6 1299 aaKnown RBP17.23■□□□□ 0.35
VPS28-202ENST00000377348 KIF13BQ9NQT8 1826 aa17.23■□□□□ 0.35
VPS28-202ENST00000377348 KIAA1551Q9HCM1 1747 aa17.22■□□□□ 0.35
VPS28-202ENST00000377348 E9PSI1 815 aa17.22■□□□□ 0.35
VPS28-202ENST00000377348 DPEP1P16444 411 aa17.22■□□□□ 0.35
VPS28-202ENST00000377348 SLFN5Q08AF3 891 aa17.22■□□□□ 0.35
VPS28-202ENST00000377348 NBPF5PQ86XG9 351 aaPredicted RBP17.22■□□□□ 0.35
VPS28-202ENST00000377348 UBN2Q6ZU65 1347 aa17.21■□□□□ 0.35
VPS28-202ENST00000377348 ATP10DQ9P241 1426 aa17.21■□□□□ 0.35
VPS28-202ENST00000377348 NUP98P52948 1817 aa17.21■□□□□ 0.35
VPS28-202ENST00000377348 NPHP1O15259 732 aa17.21■□□□□ 0.35
VPS28-202ENST00000377348 CHRNA5P30532 468 aa17.21■□□□□ 0.35
VPS28-202ENST00000377348 TGFB2P61812 414 aa17.21■□□□□ 0.35
VPS28-202ENST00000377348 CNBD1Q8NA66 436 aa17.21■□□□□ 0.35
VPS28-202ENST00000377348 N4BP2Q86UW6 1770 aaPredicted RBP17.2■□□□□ 0.34
VPS28-202ENST00000377348 HNRNPUQ00839 825 aaKnown RBP eCLIP17.2■□□□□ 0.34
VPS28-202ENST00000377348 GPR162Q16538 588 aa17.2■□□□□ 0.34
VPS28-202ENST00000377348 ANKRD13DQ6ZTN6 518 aa17.2■□□□□ 0.34
VPS28-202ENST00000377348 ZNF34Q8IZ26 560 aa17.2■□□□□ 0.34
VPS28-202ENST00000377348 PLBD2Q8NHP8 589 aa17.2■□□□□ 0.34
VPS28-202ENST00000377348 STK31Q9BXU1 1019 aa17.2■□□□□ 0.34
VPS28-202ENST00000377348 YBX3P16989 372 aaKnown RBP eCLIP17.19■□□□□ 0.341e-7■□□□□ 9.8
VPS28-202ENST00000377348 KCNA3P22001 575 aa17.19■□□□□ 0.34
VPS28-202ENST00000377348 SUSD4Q5VX71 490 aa17.19■□□□□ 0.34
VPS28-202ENST00000377348 G2E3Q7L622 706 aa17.19■□□□□ 0.34
VPS28-202ENST00000377348 ZNF428Q96B54 188 aa17.19■□□□□ 0.34
VPS28-202ENST00000377348 CHMP4AQ9BY43 222 aa17.19■□□□□ 0.34
VPS28-202ENST00000377348 DCAF8L1A6NGE4 600 aa17.18■□□□□ 0.34
VPS28-202ENST00000377348 SLC4A2P04920 1241 aa17.18■□□□□ 0.34
VPS28-202ENST00000377348 ST5P78524 1137 aa17.18■□□□□ 0.34
VPS28-202ENST00000377348 NUTM1Q86Y26 1132 aa17.18■□□□□ 0.34
VPS28-202ENST00000377348 TCIRG1Q13488 830 aa17.17■□□□□ 0.34
VPS28-202ENST00000377348 TPTE2Q6XPS3 522 aa17.17■□□□□ 0.34
VPS28-202ENST00000377348 RIC3Q7Z5B4 369 aa17.17■□□□□ 0.34
VPS28-202ENST00000377348 ANKRD31Q8N7Z5 1873 aa17.16■□□□□ 0.34
VPS28-202ENST00000377348 ATP5J2-PTCD1G3V325 749 aa17.16■□□□□ 0.34
VPS28-202ENST00000377348 NTSR2O95665 410 aa17.16■□□□□ 0.34
VPS28-202ENST00000377348 HSP90AB3PQ58FF7 597 aa17.16■□□□□ 0.34
VPS28-202ENST00000377348 C2CD5Q86YS7 1000 aa17.16■□□□□ 0.34
VPS28-202ENST00000377348 TRMT2AQ8IZ69 625 aaKnown RBP17.16■□□□□ 0.34
VPS28-202ENST00000377348 BRIP1Q9BX63 1249 aa17.16■□□□□ 0.34
VPS28-202ENST00000377348 ABCC12Q96J65 1359 aa17.15■□□□□ 0.34
VPS28-202ENST00000377348 GTF2E1P29083 439 aaPredicted RBP17.15■□□□□ 0.34
VPS28-202ENST00000377348 ERFEQ4G0M1 354 aa17.15■□□□□ 0.34
VPS28-202ENST00000377348 PARP10Q53GL7 1025 aa17.15■□□□□ 0.34
VPS28-202ENST00000377348 NLRP10Q86W26 655 aa17.15■□□□□ 0.34
VPS28-202ENST00000377348 BCS1LQ9Y276 419 aa17.15■□□□□ 0.34
VPS28-202ENST00000377348 PDE6BP35913 854 aa17.14■□□□□ 0.33
VPS28-202ENST00000377348 ISCA1Q9BUE6 129 aa17.14■□□□□ 0.33
VPS28-202ENST00000377348 NYXQ9GZU5 481 aa17.14■□□□□ 0.33
VPS28-202ENST00000377348 PIM2Q9P1W9 311 aa17.14■□□□□ 0.33
VPS28-202ENST00000377348 ANKRD36CQ5JPF3 1778 aa17.14■□□□□ 0.33
VPS28-202ENST00000377348 ARFGEF2Q9Y6D5 1785 aa17.14■□□□□ 0.33
VPS28-202ENST00000377348 PI4KAP2A4QPH2 592 aa17.13■□□□□ 0.33
VPS28-202ENST00000377348 H0YIN7 160 aa17.13■□□□□ 0.33
VPS28-202ENST00000377348 DDX58O95786 925 aaKnown RBP17.13■□□□□ 0.33
VPS28-202ENST00000377348 FLIIQ13045 1269 aa17.13■□□□□ 0.33
VPS28-202ENST00000377348 PPP1R42Q7Z4L9 355 aa17.13■□□□□ 0.33
VPS28-202ENST00000377348 SYNE4Q8N205 404 aa17.13■□□□□ 0.33
VPS28-202ENST00000377348 PI4KAP1Q8N8J0 262 aa17.13■□□□□ 0.33
VPS28-202ENST00000377348 MYD88Q99836 296 aa17.13■□□□□ 0.33
VPS28-202ENST00000377348 UTP14AQ9BVJ6 771 aaKnown RBP17.13■□□□□ 0.33
VPS28-202ENST00000377348 MAP3K2Q9Y2U5 619 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms