RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 GOLGA6DP0CG33 693 aa5.32□□□□□ -1.56
SCN1A-202ENST00000375405 HLTFQ14527 1009 aaKnown RBP eCLIP5.32□□□□□ -1.566e-7■■■■□ 22.5
SCN1A-202ENST00000375405 CCDC110Q8TBZ0 833 aa5.32□□□□□ -1.56
SCN1A-202ENST00000375405 USP48Q86UV5 1035 aa5.32□□□□□ -1.56
SCN1A-202ENST00000375405 VPS36Q86VN1 386 aa5.32□□□□□ -1.56
SCN1A-202ENST00000375405 CRACR2AQ9BSW2 395 aa5.32□□□□□ -1.56
SCN1A-202ENST00000375405 NLRP2Q9NX02 1062 aa5.32□□□□□ -1.56
SCN1A-202ENST00000375405 EIF4E1BA6NMX2 242 aaKnown RBP5.32□□□□□ -1.56
SCN1A-202ENST00000375405 RBBP5Q15291 538 aaKnown RBP5.32□□□□□ -1.56
SCN1A-202ENST00000375405 INTS3Q68E01 1043 aaKnown RBP5.32□□□□□ -1.56
SCN1A-202ENST00000375405 IQCA1Q86XH1 822 aa5.32□□□□□ -1.56
SCN1A-202ENST00000375405 RNF168Q8IYW5 571 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-202ENST00000375405 CCDC114Q96M63 670 aa5.32□□□□□ -1.56
SCN1A-202ENST00000375405 TRIM6Q9C030 488 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-202ENST00000375405 FAM169AQ9Y6X4 670 aa5.32□□□□□ -1.56
SCN1A-202ENST00000375405 H0YC42 278 aa5.31□□□□□ -1.56
SCN1A-202ENST00000375405 SLMAPQ14BN4 828 aa5.31□□□□□ -1.56
SCN1A-202ENST00000375405 CEP128Q6ZU80 1094 aa5.31□□□□□ -1.56
SCN1A-202ENST00000375405 NLRP9Q7RTR0 991 aa5.31□□□□□ -1.56
SCN1A-202ENST00000375405 UBXN4Q92575 508 aa5.31□□□□□ -1.56
SCN1A-202ENST00000375405 NUF2Q9BZD4 464 aa5.31□□□□□ -1.56
SCN1A-202ENST00000375405 CCDC157Q569K6 752 aa5.31□□□□□ -1.56
SCN1A-202ENST00000375405 SMAP1Q8IYB5 467 aaPredicted RBP5.31□□□□□ -1.56
SCN1A-202ENST00000375405 TTC1Q99614 292 aa5.31□□□□□ -1.56
SCN1A-202ENST00000375405 PRDM10Q9NQV6 1147 aa5.31□□□□□ -1.56
SCN1A-202ENST00000375405 NOL7Q9UMY1 257 aaKnown RBP5.31□□□□□ -1.56
SCN1A-202ENST00000375405 TTLL3Q9Y4R7 772 aa5.31□□□□□ -1.56
SCN1A-202ENST00000375405 POLR3DP05423 398 aaPredicted RBP5.31□□□□□ -1.56
SCN1A-202ENST00000375405 BRD2P25440 801 aaKnown RBP5.31□□□□□ -1.56
SCN1A-202ENST00000375405 CCDC125Q86Z20 511 aa5.31□□□□□ -1.56
SCN1A-202ENST00000375405 VPS52Q8N1B4 723 aa5.31□□□□□ -1.56
SCN1A-202ENST00000375405 CXorf38Q8TB03 319 aa5.31□□□□□ -1.56
SCN1A-202ENST00000375405 ZKSCAN5Q9Y2L8 839 aa5.31□□□□□ -1.56
SCN1A-202ENST00000375405 SMIM24O75264 130 aa5.31□□□□□ -1.56
SCN1A-202ENST00000375405 C16orf72Q14CZ0 275 aa5.31□□□□□ -1.56
SCN1A-202ENST00000375405 NUTM2GQ5VZR2 741 aa5.31□□□□□ -1.56
SCN1A-202ENST00000375405 GSTA5Q7RTV2 222 aa5.31□□□□□ -1.56
SCN1A-202ENST00000375405 SPDYE1Q8NFV5 336 aaPredicted RBP5.31□□□□□ -1.56
SCN1A-202ENST00000375405 ROCK2O75116 1388 aaKnown RBP5.31□□□□□ -1.56
SCN1A-202ENST00000375405 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP5.31□□□□□ -1.56
SCN1A-202ENST00000375405 ABL1P00519 1130 aa5.31□□□□□ -1.56
SCN1A-202ENST00000375405 TDO2P48775 406 aa5.31□□□□□ -1.56
SCN1A-202ENST00000375405 KIAA1524Q8TCG1 905 aa5.31□□□□□ -1.56
SCN1A-202ENST00000375405 DDX11Q96FC9 970 aa5.31□□□□□ -1.56
SCN1A-202ENST00000375405 IFT74Q96LB3 600 aa5.31□□□□□ -1.56
SCN1A-202ENST00000375405 ANO3Q9BYT9 981 aa5.31□□□□□ -1.56
SCN1A-202ENST00000375405 PPANQ9NQ55 473 aaKnown RBP5.31□□□□□ -1.56
SCN1A-202ENST00000375405 BZW2Q9Y6E2 419 aaKnown RBP5.31□□□□□ -1.56
SCN1A-202ENST00000375405 OCRLQ01968 901 aa5.31□□□□□ -1.56
SCN1A-202ENST00000375405 TCERG1LQ5VWI1 586 aa5.31□□□□□ -1.56
SCN1A-202ENST00000375405 CCDC50Q8IVM0 306 aa5.31□□□□□ -1.56
SCN1A-202ENST00000375405 CCDC148Q8NFR7 591 aa5.31□□□□□ -1.56
SCN1A-202ENST00000375405 FAM107BQ9H098 131 aa5.31□□□□□ -1.56
SCN1A-202ENST00000375405 AMOTL2Q9Y2J4 779 aa5.31□□□□□ -1.56
SCN1A-202ENST00000375405 GOLGA8AA7E2F4 631 aa5.31□□□□□ -1.56
SCN1A-202ENST00000375405 GOLGA8BA8MQT2 603 aa5.31□□□□□ -1.56
SCN1A-202ENST00000375405 HSF2BPO75031 334 aa5.31□□□□□ -1.56
SCN1A-202ENST00000375405 HIF1AQ16665 826 aa5.31□□□□□ -1.56
SCN1A-202ENST00000375405 CCDC152Q4G0S7 254 aa5.31□□□□□ -1.56
SCN1A-202ENST00000375405 CEP57Q86XR8 500 aa5.31□□□□□ -1.56
SCN1A-202ENST00000375405 FAM43AQ8N2R8 423 aa5.31□□□□□ -1.56
SCN1A-202ENST00000375405 DDX54Q8TDD1 881 aaKnown RBP5.31□□□□□ -1.56
SCN1A-202ENST00000375405 ARHGEF1Q92888 912 aaKnown RBP5.31□□□□□ -1.56
SCN1A-202ENST00000375405 CTAGE1Q96RT6 745 aa5.31□□□□□ -1.56
SCN1A-202ENST00000375405 FCHSD2O94868 740 aa5.3□□□□□ -1.56
SCN1A-202ENST00000375405 FKBP5Q13451 457 aaPredicted RBP5.3□□□□□ -1.56
SCN1A-202ENST00000375405 STK38Q15208 465 aa5.3□□□□□ -1.56
SCN1A-202ENST00000375405 SPA17Q15506 151 aa5.3□□□□□ -1.56
SCN1A-202ENST00000375405 AKNAD1Q5T1N1 836 aa5.3□□□□□ -1.56
SCN1A-202ENST00000375405 CTAGE6Q86UF2 777 aa5.3□□□□□ -1.56
SCN1A-202ENST00000375405 TSG101Q99816 390 aa5.3□□□□□ -1.56
SCN1A-202ENST00000375405 EHMT1Q9H9B1 1298 aa5.3□□□□□ -1.56
SCN1A-202ENST00000375405 XAB2Q9HCS7 855 aaKnown RBP5.3□□□□□ -1.56
SCN1A-202ENST00000375405 CNOT7Q9UIV1 285 aaKnown RBP5.3□□□□□ -1.56
SCN1A-202ENST00000375405 ZNF165P49910 485 aa5.3□□□□□ -1.56
SCN1A-202ENST00000375405 DAB2P98082 770 aa5.3□□□□□ -1.56
SCN1A-202ENST00000375405 MAP9Q49MG5 647 aa5.3□□□□□ -1.56
SCN1A-202ENST00000375405 ERMNQ8TAM6 284 aa5.3□□□□□ -1.56
SCN1A-202ENST00000375405 SYNDIG1LA6NDD5 238 aa5.3□□□□□ -1.56
SCN1A-202ENST00000375405 STXBP3O00186 592 aa5.3□□□□□ -1.56
SCN1A-202ENST00000375405 HSD3B2P26439 372 aa5.3□□□□□ -1.56
SCN1A-202ENST00000375405 ATP1A2P50993 1020 aa5.3□□□□□ -1.56
SCN1A-202ENST00000375405 SH2D4BQ5SQS7 431 aa5.3□□□□□ -1.56
SCN1A-202ENST00000375405 FILIP1Q7Z7B0 1213 aa5.3□□□□□ -1.56
SCN1A-202ENST00000375405 ZNF467Q7Z7K2 595 aaPredicted RBP5.3□□□□□ -1.56
SCN1A-202ENST00000375405 ZNF513Q8N8E2 541 aaPredicted RBP5.3□□□□□ -1.56
SCN1A-202ENST00000375405 RNF214Q8ND24 703 aa5.3□□□□□ -1.56
SCN1A-202ENST00000375405 N4BP2L2Q92802 583 aaPredicted RBP5.3□□□□□ -1.56
SCN1A-202ENST00000375405 ZNF622Q969S3 477 aaKnown RBP eCLIP5.3□□□□□ -1.56
SCN1A-202ENST00000375405 NEUROD4Q9HD90 331 aa5.3□□□□□ -1.56
SCN1A-202ENST00000375405 EIF4G1Q04637 1599 aaKnown RBP5.3□□□□□ -1.56
SCN1A-202ENST00000375405 KIF4AO95239 1232 aa5.3□□□□□ -1.56
SCN1A-202ENST00000375405 CCT6AP40227 531 aaKnown RBP5.3□□□□□ -1.56
SCN1A-202ENST00000375405 CETN1Q12798 172 aa5.3□□□□□ -1.56
SCN1A-202ENST00000375405 STK3Q13188 491 aa5.3□□□□□ -1.56
SCN1A-202ENST00000375405 KHDRBS2Q5VWX1 349 aaKnown RBP5.3□□□□□ -1.56
SCN1A-202ENST00000375405 ZFP91Q96JP5 570 aaPredicted RBP5.3□□□□□ -1.56
SCN1A-202ENST00000375405 GOLGA3Q08378 1498 aa5.3□□□□□ -1.56
SCN1A-202ENST00000375405 TTC31Q49AM3 519 aaPredicted RBP5.3□□□□□ -1.56
SCN1A-202ENST00000375405 USP37Q86T82 979 aa5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms