RNA–Protein interactions for RNA: ENST00000373887.7

TRAF1-201, Transcript of TNF receptor associated factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF1, Length 6,324 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF1-201ENST00000373887 PODXL2Q9NZ53 605 aa16.64■□□□□ 0.25
TRAF1-201ENST00000373887 SYCE3A1L190 88 aa16.64■□□□□ 0.25
TRAF1-201ENST00000373887 CASQ1P31415 396 aa16.64■□□□□ 0.25
TRAF1-201ENST00000373887 CTNNBL1Q8WYA6 563 aaPredicted RBP16.64■□□□□ 0.25
TRAF1-201ENST00000373887 GUCY1B3Q02153 619 aa16.63■□□□□ 0.25
TRAF1-201ENST00000373887 C20orf194Q5TEA3 1177 aa16.63■□□□□ 0.25
TRAF1-201ENST00000373887 CCDC144CPQ8IYA2 1237 aa16.63■□□□□ 0.25
TRAF1-201ENST00000373887 TNNT1P13805 278 aa16.63■□□□□ 0.25
TRAF1-201ENST00000373887 KLHL10Q6JEL2 608 aa16.63■□□□□ 0.25
TRAF1-201ENST00000373887 CWC25Q9NXE8 425 aaPredicted RBP16.63■□□□□ 0.25
TRAF1-201ENST00000373887 FLIIQ13045 1269 aa16.63■□□□□ 0.25
TRAF1-201ENST00000373887 RNF187Q5TA31 235 aaPredicted RBP16.63■□□□□ 0.25
TRAF1-201ENST00000373887 DISP3Q9P2K9 1392 aa16.63■□□□□ 0.25
TRAF1-201ENST00000373887 PPFIA3O75145 1194 aa16.63■□□□□ 0.25
TRAF1-201ENST00000373887 TSHZ3Q63HK5 1081 aa16.63■□□□□ 0.25
TRAF1-201ENST00000373887 UBA5Q9GZZ9 404 aa16.63■□□□□ 0.25
TRAF1-201ENST00000373887 PSMD1Q99460 953 aa16.62■□□□□ 0.25
TRAF1-201ENST00000373887 VAT1LQ9HCJ6 419 aa16.62■□□□□ 0.25
TRAF1-201ENST00000373887 LIG1P18858 919 aa16.62■□□□□ 0.25
TRAF1-201ENST00000373887 RBM25P49756 843 aaKnown RBP16.62■□□□□ 0.25
TRAF1-201ENST00000373887 SPA17Q15506 151 aa16.62■□□□□ 0.25
TRAF1-201ENST00000373887 CLEC11AQ9Y240 323 aa16.62■□□□□ 0.25
TRAF1-201ENST00000373887 POTEJP0CG39 1038 aa16.62■□□□□ 0.25
TRAF1-201ENST00000373887 IFFO1Q0D2I5 559 aa16.62■□□□□ 0.25
TRAF1-201ENST00000373887 DDB1Q16531 1140 aa16.62■□□□□ 0.25
TRAF1-201ENST00000373887 GOLIM4O00461 696 aa16.62■□□□□ 0.25
TRAF1-201ENST00000373887 RAB11FIP4Q86YS3 637 aa16.62■□□□□ 0.25
TRAF1-201ENST00000373887 CCDC83Q8IWF9 413 aa16.62■□□□□ 0.25
TRAF1-201ENST00000373887 FEZ1Q99689 392 aa16.62■□□□□ 0.25
TRAF1-201ENST00000373887 GSTTP1A0A1W2PQM5 241 aa16.61■□□□□ 0.25
TRAF1-201ENST00000373887 PPP1R42Q7Z4L9 355 aa16.61■□□□□ 0.25
TRAF1-201ENST00000373887 LMTK3Q96Q04 1460 aa16.61■□□□□ 0.25
TRAF1-201ENST00000373887 MACROD2A1Z1Q3 448 aa16.61■□□□□ 0.25
TRAF1-201ENST00000373887 NCOA1Q15788 1441 aa16.61■□□□□ 0.25
TRAF1-201ENST00000373887 PI4KAP2A4QPH2 592 aa16.61■□□□□ 0.25
TRAF1-201ENST00000373887 STAMBPO95630 424 aa16.61■□□□□ 0.25
TRAF1-201ENST00000373887 PI4KAP1Q8N8J0 262 aa16.61■□□□□ 0.25
TRAF1-201ENST00000373887 POLR3GO15318 223 aaPredicted RBP16.61■□□□□ 0.25
TRAF1-201ENST00000373887 FERMT3Q86UX7 667 aa16.61■□□□□ 0.25
TRAF1-201ENST00000373887 HMGB2P26583 209 aaKnown RBP16.61■□□□□ 0.25
TRAF1-201ENST00000373887 ZNF287Q9HBT7 754 aa16.61■□□□□ 0.25
TRAF1-201ENST00000373887 MBIPQ9NS73 344 aa16.6■□□□□ 0.25
TRAF1-201ENST00000373887 WDHD1O75717 1129 aaPredicted RBP16.6■□□□□ 0.25
TRAF1-201ENST00000373887 RARSP54136 660 aaKnown RBP16.6■□□□□ 0.25
TRAF1-201ENST00000373887 PPIP5K1Q6PFW1 1433 aa16.6■□□□□ 0.25
TRAF1-201ENST00000373887 MAP3K11Q16584 847 aa16.6■□□□□ 0.25
TRAF1-201ENST00000373887 PUS7Q96PZ0 661 aaKnown RBP16.6■□□□□ 0.25
TRAF1-201ENST00000373887 NPHP3Q7Z494 1330 aa16.6■□□□□ 0.25
TRAF1-201ENST00000373887 RAB11FIP3O75154 756 aa16.6■□□□□ 0.25
TRAF1-201ENST00000373887 TFCP2L1Q9NZI6 479 aa16.59■□□□□ 0.25
TRAF1-201ENST00000373887 GLRX3O76003 335 aaKnown RBP16.59■□□□□ 0.25
TRAF1-201ENST00000373887 LUZP1Q86V48 1076 aa16.59■□□□□ 0.25
TRAF1-201ENST00000373887 SETDB2Q96T68 719 aa16.59■□□□□ 0.25
TRAF1-201ENST00000373887 CDC5LQ99459 802 aaKnown RBP16.59■□□□□ 0.25
TRAF1-201ENST00000373887 CHPF2Q9P2E5 772 aa16.59■□□□□ 0.25
TRAF1-201ENST00000373887 TTC21BQ7Z4L5 1316 aa16.59■□□□□ 0.25
TRAF1-201ENST00000373887 SNRPA1P09661 255 aaKnown RBP16.59■□□□□ 0.25
TRAF1-201ENST00000373887 SERPINA10Q9UK55 444 aa16.59■□□□□ 0.25
TRAF1-201ENST00000373887 SCAF11Q99590 1463 aaKnown RBP16.59■□□□□ 0.25
TRAF1-201ENST00000373887 HAND2P61296 217 aa16.59■□□□□ 0.25
TRAF1-201ENST00000373887 URI1O94763 535 aaPredicted RBP16.59■□□□□ 0.25
TRAF1-201ENST00000373887 RBM26Q5T8P6 1007 aaKnown RBP16.59■□□□□ 0.25
TRAF1-201ENST00000373887 U3KPZ7 1027 aaPredicted RBP16.59■□□□□ 0.25
TRAF1-201ENST00000373887 TEX14Q8IWB6 1497 aa16.58■□□□□ 0.25
TRAF1-201ENST00000373887 CETN2P41208 172 aa16.58■□□□□ 0.25
TRAF1-201ENST00000373887 CACNA2D4Q7Z3S7 1137 aa16.58■□□□□ 0.25
TRAF1-201ENST00000373887 RIMS2Q9UQ26 1411 aa16.58■□□□□ 0.25
TRAF1-201ENST00000373887 ZNF213O14771 459 aa16.58■□□□□ 0.24
TRAF1-201ENST00000373887 PTPN14Q15678 1187 aa16.58■□□□□ 0.24
TRAF1-201ENST00000373887 KRT32Q14532 448 aa16.58■□□□□ 0.24
TRAF1-201ENST00000373887 UHRF1BP1LA0JNW5 1464 aa16.58■□□□□ 0.24
TRAF1-201ENST00000373887 TRIM21P19474 475 aaKnown RBP16.58■□□□□ 0.24
TRAF1-201ENST00000373887 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP16.58■□□□□ 0.24
TRAF1-201ENST00000373887 ESPNB1AK53 854 aa16.57■□□□□ 0.24
TRAF1-201ENST00000373887 PPP1R12BO60237 982 aaPredicted RBP16.57■□□□□ 0.24
TRAF1-201ENST00000373887 TTC16Q8NEE8 873 aa16.57■□□□□ 0.24
TRAF1-201ENST00000373887 TEX13AQ9BXU3 409 aaPredicted RBP16.57■□□□□ 0.24
TRAF1-201ENST00000373887 KIF4BQ2VIQ3 1234 aa16.57■□□□□ 0.24
TRAF1-201ENST00000373887 CCT2P78371 535 aaKnown RBP16.57■□□□□ 0.24
TRAF1-201ENST00000373887 GPATCH11Q8N954 259 aa16.57■□□□□ 0.24
TRAF1-201ENST00000373887 CEP131Q9UPN4 1083 aa16.57■□□□□ 0.24
TRAF1-201ENST00000373887 SYCP2Q9BX26 1530 aa16.57■□□□□ 0.24
TRAF1-201ENST00000373887 KIF5CO60282 957 aa16.57■□□□□ 0.24
TRAF1-201ENST00000373887 CPLX3Q8WVH0 158 aa16.57■□□□□ 0.24
TRAF1-201ENST00000373887 ZFP91Q96JP5 570 aaPredicted RBP16.57■□□□□ 0.24
TRAF1-201ENST00000373887 ZSCAN31Q96LW9 406 aaPredicted RBP16.56■□□□□ 0.24
TRAF1-201ENST00000373887 RAPGEF6Q8TEU7 1601 aa16.56■□□□□ 0.24
TRAF1-201ENST00000373887 FKBP15Q5T1M5 1219 aa16.56■□□□□ 0.24
TRAF1-201ENST00000373887 WASF1Q92558 559 aa16.56■□□□□ 0.24
TRAF1-201ENST00000373887 GBP3Q9H0R5 595 aa16.56■□□□□ 0.24
TRAF1-201ENST00000373887 NIP7Q9Y221 180 aaKnown RBP eCLIP16.56■□□□□ 0.24
TRAF1-201ENST00000373887 TNIP1Q15025 636 aa16.56■□□□□ 0.24
TRAF1-201ENST00000373887 SLC12A7Q9Y666 1083 aa16.56■□□□□ 0.24
TRAF1-201ENST00000373887 COMMD10Q9Y6G5 202 aa16.56■□□□□ 0.24
TRAF1-201ENST00000373887 PICALMQ13492 652 aa16.56■□□□□ 0.24
TRAF1-201ENST00000373887 IFIT3O14879 490 aaKnown RBP16.56■□□□□ 0.24
TRAF1-201ENST00000373887 XAGE3Q8WTP9 111 aa16.56■□□□□ 0.24
TRAF1-201ENST00000373887 SFPQP23246 707 aaKnown RBP eCLIP16.55■□□□□ 0.24
TRAF1-201ENST00000373887 CTCFLQ8NI51 663 aaPredicted RBP16.55■□□□□ 0.24
TRAF1-201ENST00000373887 IPO4Q8TEX9 1081 aaKnown RBP16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms