RNA–Protein interactions for RNA: ENST00000364588.1

RNU4-4P-201, Transcript of RNA, U4 small nuclear 4, pseudogene, humanhuman

BASIC

Gene RNU4-4P, Length 130 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-4P-201ENST00000364588 RASA1P20936 1047 aa8.62□□□□□ -1.03
RNU4-4P-201ENST00000364588 LARP1Q6PKG0 1096 aaKnown RBP8.62□□□□□ -1.03
RNU4-4P-201ENST00000364588 PGBD3Q8N328 593 aa8.62□□□□□ -1.03
RNU4-4P-201ENST00000364588 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.62□□□□□ -1.03
RNU4-4P-201ENST00000364588 SCHIP1Q9P0W5 487 aaPredicted RBP8.62□□□□□ -1.03
RNU4-4P-201ENST00000364588 FHOD3Q2V2M9 1422 aa8.62□□□□□ -1.03
RNU4-4P-201ENST00000364588 RAPGEF3O95398 923 aa8.61□□□□□ -1.03
RNU4-4P-201ENST00000364588 LMOD1P29536 600 aaPredicted RBP8.61□□□□□ -1.03
RNU4-4P-201ENST00000364588 TRERF1Q96PN7 1200 aa8.61□□□□□ -1.03
RNU4-4P-201ENST00000364588 NUCKS1Q9H1E3 243 aaKnown RBP8.61□□□□□ -1.03
RNU4-4P-201ENST00000364588 GPAMQ9HCL2 828 aa8.61□□□□□ -1.03
RNU4-4P-201ENST00000364588 CUEDC1Q9NWM3 386 aaPredicted RBP8.61□□□□□ -1.03
RNU4-4P-201ENST00000364588 IQSEC3Q9UPP2 1182 aaPredicted RBP8.61□□□□□ -1.03
RNU4-4P-201ENST00000364588 NUP153P49790 1475 aaKnown RBP8.61□□□□□ -1.03
RNU4-4P-201ENST00000364588 FAM196BA6NMK8 535 aa8.6□□□□□ -1.03
RNU4-4P-201ENST00000364588 ZDHHC3Q9NYG2 299 aa8.6□□□□□ -1.03
RNU4-4P-201ENST00000364588 ZBTB7BO15156 539 aaPredicted RBP8.59□□□□□ -1.03
RNU4-4P-201ENST00000364588 TATP17735 454 aaPredicted RBP8.59□□□□□ -1.03
RNU4-4P-201ENST00000364588 EPHA4P54764 986 aa8.59□□□□□ -1.03
RNU4-4P-201ENST00000364588 EFHC2Q5JST6 749 aa8.59□□□□□ -1.03
RNU4-4P-201ENST00000364588 CFAP70Q5T0N1 1121 aa8.59□□□□□ -1.03
RNU4-4P-201ENST00000364588 CCDC97Q96F63 343 aaPredicted RBP8.59□□□□□ -1.03
RNU4-4P-201ENST00000364588 COL25A1Q9BXS0 654 aaPredicted RBP8.59□□□□□ -1.03
RNU4-4P-201ENST00000364588 VRTNQ9H8Y1 702 aa8.59□□□□□ -1.03
RNU4-4P-201ENST00000364588 CABP1Q9NZU7 370 aa8.59□□□□□ -1.03
RNU4-4P-201ENST00000364588 CHMP3Q9Y3E7 222 aa8.59□□□□□ -1.03
RNU4-4P-201ENST00000364588 EEA1Q15075 1411 aa8.59□□□□□ -1.03
RNU4-4P-201ENST00000364588 NEO1Q92859 1461 aa8.58□□□□□ -1.04
RNU4-4P-201ENST00000364588 FRMPD1Q5SYB0 1578 aa8.58□□□□□ -1.04
RNU4-4P-201ENST00000364588 USP17L15C9J2P7 530 aa8.58□□□□□ -1.04
RNU4-4P-201ENST00000364588 USP17L10C9JJH3 530 aa8.58□□□□□ -1.04
RNU4-4P-201ENST00000364588 USP17L13C9JLJ4 530 aa8.58□□□□□ -1.04
RNU4-4P-201ENST00000364588 USP17L12C9JPN9 530 aa8.58□□□□□ -1.04
RNU4-4P-201ENST00000364588 USP17L11C9JVI0 530 aa8.58□□□□□ -1.04
RNU4-4P-201ENST00000364588 USP17L21D6R901 530 aa8.58□□□□□ -1.04
RNU4-4P-201ENST00000364588 USP17L18D6R9N7 530 aa8.58□□□□□ -1.04
RNU4-4P-201ENST00000364588 USP17L22D6RA61 530 aa8.58□□□□□ -1.04
RNU4-4P-201ENST00000364588 USP17L17D6RBQ6 530 aa8.58□□□□□ -1.04
RNU4-4P-201ENST00000364588 USP17L19D6RCP7 530 aa8.58□□□□□ -1.04
RNU4-4P-201ENST00000364588 USP17L20D6RJB6 530 aa8.58□□□□□ -1.04
RNU4-4P-201ENST00000364588 MSX1P28360 303 aa8.58□□□□□ -1.04
RNU4-4P-201ENST00000364588 SEC13P55735 322 aa8.58□□□□□ -1.04
RNU4-4P-201ENST00000364588 FOXK2Q01167 660 aa8.58□□□□□ -1.04
RNU4-4P-201ENST00000364588 USP17L24Q0WX57 530 aa8.58□□□□□ -1.04
RNU4-4P-201ENST00000364588 ERICH6Q7L0X2 663 aa8.58□□□□□ -1.04
RNU4-4P-201ENST00000364588 C14orf37Q86TY3 774 aa8.58□□□□□ -1.04
RNU4-4P-201ENST00000364588 SLC9A9Q8IVB4 645 aa8.58□□□□□ -1.04
RNU4-4P-201ENST00000364588 ZNF295-AS1Q8N0V1 137 aa8.58□□□□□ -1.04
RNU4-4P-201ENST00000364588 GPR161Q8N6U8 529 aaKnown RBP8.58□□□□□ -1.04
RNU4-4P-201ENST00000364588 CRISPLD1Q9H336 500 aa8.58□□□□□ -1.04
RNU4-4P-201ENST00000364588 STK17AQ9UEE5 414 aa8.58□□□□□ -1.04
RNU4-4P-201ENST00000364588 PHLDB1Q86UU1 1377 aa8.58□□□□□ -1.04
RNU4-4P-201ENST00000364588 ADAMTSL3P82987 1691 aa8.57□□□□□ -1.04
RNU4-4P-201ENST00000364588 FAM181BA6NEQ2 426 aa8.57□□□□□ -1.04
RNU4-4P-201ENST00000364588 PSMA6P60900 246 aaKnown RBP8.57□□□□□ -1.04
RNU4-4P-201ENST00000364588 DBN1Q16643 649 aa8.57□□□□□ -1.04
RNU4-4P-201ENST00000364588 KANK4Q5T7N3 995 aaPredicted RBP8.57□□□□□ -1.04
RNU4-4P-201ENST00000364588 ZSCAN1Q8NBB4 408 aa8.57□□□□□ -1.04
RNU4-4P-201ENST00000364588 GTPBP3Q969Y2 492 aaKnown RBP8.57□□□□□ -1.04
RNU4-4P-201ENST00000364588 CNTNAP3BQ96NU0 1288 aa8.57□□□□□ -1.04
RNU4-4P-201ENST00000364588 CNTNAP3Q9BZ76 1288 aa8.57□□□□□ -1.04
RNU4-4P-201ENST00000364588 PHF24Q9UPV7 400 aa8.57□□□□□ -1.04
RNU4-4P-201ENST00000364588 USP3Q9Y6I4 520 aa8.57□□□□□ -1.04
RNU4-4P-201ENST00000364588 ARID4BQ4LE39 1312 aaPredicted RBP8.56□□□□□ -1.04
RNU4-4P-201ENST00000364588 PLEKHD1A6NEE1 506 aa8.56□□□□□ -1.04
RNU4-4P-201ENST00000364588 ATP4AP20648 1035 aa8.56□□□□□ -1.04
RNU4-4P-201ENST00000364588 PTK7Q13308 1070 aa8.56□□□□□ -1.04
RNU4-4P-201ENST00000364588 CRTC2Q53ET0 693 aaPredicted RBP8.56□□□□□ -1.04
RNU4-4P-201ENST00000364588 TNS4Q8IZW8 715 aa8.56□□□□□ -1.04
RNU4-4P-201ENST00000364588 RUBCNLQ9H714 662 aa8.56□□□□□ -1.04
RNU4-4P-201ENST00000364588 PTPRMP28827 1452 aa8.56□□□□□ -1.04
RNU4-4P-201ENST00000364588 MADDQ8WXG6 1647 aa8.55□□□□□ -1.04
RNU4-4P-201ENST00000364588 BCORL1Q5H9F3 1711 aa8.55□□□□□ -1.04
RNU4-4P-201ENST00000364588 KRT76Q01546 638 aa8.55□□□□□ -1.04
RNU4-4P-201ENST00000364588 TEAD4Q15561 434 aa8.55□□□□□ -1.04
RNU4-4P-201ENST00000364588 FIGNL1Q6PIW4 674 aa8.55□□□□□ -1.04
RNU4-4P-201ENST00000364588 ANKMY2Q8IV38 441 aa8.55□□□□□ -1.04
RNU4-4P-201ENST00000364588 TSEN2Q8NCE0 465 aaKnown RBP8.55□□□□□ -1.04
RNU4-4P-201ENST00000364588 AIDAQ96BJ3 306 aa8.55□□□□□ -1.04
RNU4-4P-201ENST00000364588 MBIPQ9NS73 344 aa8.55□□□□□ -1.04
RNU4-4P-201ENST00000364588 SERPINA10Q9UK55 444 aa8.55□□□□□ -1.04
RNU4-4P-201ENST00000364588 TTC37Q6PGP7 1564 aa8.55□□□□□ -1.04
RNU4-4P-201ENST00000364588 EFCAB5A4FU69 1503 aa8.54□□□□□ -1.04
RNU4-4P-201ENST00000364588 CDK13Q14004 1512 aaKnown RBP8.54□□□□□ -1.04
RNU4-4P-201ENST00000364588 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP8.54□□□□□ -1.04
RNU4-4P-201ENST00000364588 RICTORQ6R327 1708 aa8.54□□□□□ -1.04
RNU4-4P-201ENST00000364588 FANCAO15360 1455 aa8.54□□□□□ -1.04
RNU4-4P-201ENST00000364588 SFI1A8K8P3 1242 aa8.54□□□□□ -1.04
RNU4-4P-201ENST00000364588 DKK1O94907 266 aa8.54□□□□□ -1.04
RNU4-4P-201ENST00000364588 RNFT1Q5M7Z0 435 aa8.54□□□□□ -1.04
RNU4-4P-201ENST00000364588 ZNF232Q9UNY5 417 aa8.54□□□□□ -1.04
RNU4-4P-201ENST00000364588 NSFL1CQ9UNZ2 370 aaKnown RBP8.54□□□□□ -1.04
RNU4-4P-201ENST00000364588 GPC6Q9Y625 555 aaPredicted RBP8.54□□□□□ -1.04
RNU4-4P-201ENST00000364588 AKNAQ7Z591 1439 aa8.54□□□□□ -1.04
RNU4-4P-201ENST00000364588 DENND4BO75064 1496 aaPredicted RBP8.53□□□□□ -1.04
RNU4-4P-201ENST00000364588 SERTM1A2A2V5 107 aa8.53□□□□□ -1.04
RNU4-4P-201ENST00000364588 GPR25O00155 361 aa8.53□□□□□ -1.04
RNU4-4P-201ENST00000364588 HIRAP54198 1017 aaPredicted RBP8.53□□□□□ -1.04
RNU4-4P-201ENST00000364588 SRSF11Q05519 484 aaKnown RBP8.53□□□□□ -1.04
RNU4-4P-201ENST00000364588 DPYDQ12882 1025 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms