RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 KDRP35968 1356 aa14.57□□□□□ -0.08
CLIP3-201ENST00000360535 FAM177BA6PVY3 158 aa14.57□□□□□ -0.08
CLIP3-201ENST00000360535 STK3Q13188 491 aa14.57□□□□□ -0.08
CLIP3-201ENST00000360535 SPC24Q8NBT2 197 aa14.57□□□□□ -0.08
CLIP3-201ENST00000360535 NRKQ7Z2Y5 1582 aa14.57□□□□□ -0.08
CLIP3-201ENST00000360535 HTATSF1O43719 755 aaKnown RBP14.57□□□□□ -0.08
CLIP3-201ENST00000360535 EIF4A1P60842 406 aaKnown RBP14.57□□□□□ -0.08
CLIP3-201ENST00000360535 KLHDC4Q8TBB5 520 aa14.57□□□□□ -0.08
CLIP3-201ENST00000360535 RGPD8O14715 1765 aaPredicted RBP14.56□□□□□ -0.08
CLIP3-201ENST00000360535 ADCY5O95622 1261 aa14.56□□□□□ -0.08
CLIP3-201ENST00000360535 ZSCAN21Q9Y5A6 473 aaPredicted RBP14.56□□□□□ -0.08
CLIP3-201ENST00000360535 CAMK4Q16566 473 aa14.56□□□□□ -0.08
CLIP3-201ENST00000360535 HS1BP3Q53T59 392 aa14.56□□□□□ -0.08
CLIP3-201ENST00000360535 BEND3Q5T5X7 828 aa14.56□□□□□ -0.08
CLIP3-201ENST00000360535 BOLA2Q9H3K6 86 aa14.56□□□□□ -0.08
CLIP3-201ENST00000360535 AGLP35573 1532 aa14.56□□□□□ -0.08
CLIP3-201ENST00000360535 ZNF500O60304 480 aaPredicted RBP14.56□□□□□ -0.08
CLIP3-201ENST00000360535 PSME1Q06323 249 aa14.56□□□□□ -0.08
CLIP3-201ENST00000360535 COL9A3Q14050 684 aaPredicted RBP14.56□□□□□ -0.08
CLIP3-201ENST00000360535 FAM227BQ96M60 508 aa14.56□□□□□ -0.08
CLIP3-201ENST00000360535 ESCO1Q5FWF5 840 aa14.55□□□□□ -0.08
CLIP3-201ENST00000360535 F13A1P00488 732 aa14.55□□□□□ -0.08
CLIP3-201ENST00000360535 KIAA2012Q0VF49 1180 aa14.55□□□□□ -0.08
CLIP3-201ENST00000360535 CCDC183Q5T5S1 534 aa14.55□□□□□ -0.08
CLIP3-201ENST00000360535 RPAP1Q9BWH6 1393 aaPredicted RBP14.55□□□□□ -0.08
CLIP3-201ENST00000360535 DIP2BQ9P265 1576 aa14.54□□□□□ -0.08
CLIP3-201ENST00000360535 GLRX3O76003 335 aaKnown RBP14.54□□□□□ -0.08
CLIP3-201ENST00000360535 PIP4K2AP48426 406 aaPredicted RBP14.54□□□□□ -0.08
CLIP3-201ENST00000360535 FOSBP53539 338 aa14.54□□□□□ -0.08
CLIP3-201ENST00000360535 POLA2Q14181 598 aa14.54□□□□□ -0.08
CLIP3-201ENST00000360535 CYP46A1Q9Y6A2 500 aa14.54□□□□□ -0.08
CLIP3-201ENST00000360535 MYL6BP14649 208 aa14.54□□□□□ -0.08
CLIP3-201ENST00000360535 NDUFB9Q9Y6M9 179 aa14.54□□□□□ -0.08
CLIP3-201ENST00000360535 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP14.54□□□□□ -0.08
CLIP3-201ENST00000360535 RUFY2Q8WXA3 655 aa14.53□□□□□ -0.08
CLIP3-201ENST00000360535 TTC14Q96N46 770 aa14.53□□□□□ -0.08
CLIP3-201ENST00000360535 BCL11BQ9C0K0 894 aaPredicted RBP14.53□□□□□ -0.08
CLIP3-201ENST00000360535 PDCL3Q9H2J4 239 aa14.53□□□□□ -0.08
CLIP3-201ENST00000360535 TFIP11Q9UBB9 837 aaKnown RBP14.53□□□□□ -0.08
CLIP3-201ENST00000360535 PLEKHG1Q9ULL1 1385 aa14.53□□□□□ -0.08
CLIP3-201ENST00000360535 CSPP1Q1MSJ5 1256 aa14.53□□□□□ -0.08
CLIP3-201ENST00000360535 EDC3Q96F86 508 aaKnown RBP14.53□□□□□ -0.08
CLIP3-201ENST00000360535 ECHDC1Q9NTX5 307 aa14.53□□□□□ -0.08
CLIP3-201ENST00000360535 C1orf141Q5JVX7 400 aa14.53□□□□□ -0.08
CLIP3-201ENST00000360535 PPFIA3O75145 1194 aa14.52□□□□□ -0.08
CLIP3-201ENST00000360535 ZKSCAN1P17029 563 aaPredicted RBP14.52□□□□□ -0.08
CLIP3-201ENST00000360535 HSP90AB4PQ58FF6 505 aa14.52□□□□□ -0.08
CLIP3-201ENST00000360535 LARP1BQ659C4 914 aaKnown RBP14.52□□□□□ -0.08
CLIP3-201ENST00000360535 HYPKQ9NX55 129 aa14.52□□□□□ -0.08
CLIP3-201ENST00000360535 SSH2Q76I76 1423 aa14.52□□□□□ -0.08
CLIP3-201ENST00000360535 UBE2HP62256 183 aa14.52□□□□□ -0.09
CLIP3-201ENST00000360535 G3BP1Q13283 466 aaKnown RBP eCLIP14.52□□□□□ -0.09
CLIP3-201ENST00000360535 ME3Q16798 604 aa14.52□□□□□ -0.09
CLIP3-201ENST00000360535 GPATCH3Q96I76 525 aa14.52□□□□□ -0.09
CLIP3-201ENST00000360535 FSD1Q9BTV5 496 aa14.52□□□□□ -0.09
CLIP3-201ENST00000360535 TLR7Q9NYK1 1049 aaKnown RBP14.52□□□□□ -0.09
CLIP3-201ENST00000360535 PHF8Q9UPP1 1060 aa14.52□□□□□ -0.09
CLIP3-201ENST00000360535 RBM8AQ9Y5S9 174 aaKnown RBP14.52□□□□□ -0.09
CLIP3-201ENST00000360535 SLC39A6Q13433 755 aa14.51□□□□□ -0.09
CLIP3-201ENST00000360535 NMIQ13287 307 aaPredicted RBP14.51□□□□□ -0.09
CLIP3-201ENST00000360535 CKAP2LQ8IYA6 745 aa14.51□□□□□ -0.09
CLIP3-201ENST00000360535 TBX22Q9Y458 520 aa14.51□□□□□ -0.09
CLIP3-201ENST00000360535 ATP6V1DQ9Y5K8 247 aa14.51□□□□□ -0.09
CLIP3-201ENST00000360535 RGPD1P0DJD0 1748 aa14.51□□□□□ -0.09
CLIP3-201ENST00000360535 AOX1Q06278 1338 aa14.5□□□□□ -0.09
CLIP3-201ENST00000360535 TAF6LQ9Y6J9 622 aa14.5□□□□□ -0.09
CLIP3-201ENST00000360535 GOLGA6L4A6NEF3 574 aa14.5□□□□□ -0.09
CLIP3-201ENST00000360535 DBF4Q9UBU7 674 aaPredicted RBP14.5□□□□□ -0.09
CLIP3-201ENST00000360535 TAOK2Q9UL54 1235 aa14.5□□□□□ -0.09
CLIP3-201ENST00000360535 RIC3Q7Z5B4 369 aa14.5□□□□□ -0.09
CLIP3-201ENST00000360535 SUCLG2Q96I99 432 aa14.5□□□□□ -0.09
CLIP3-201ENST00000360535 BICC1Q9H694 974 aaKnown RBP14.5□□□□□ -0.09
CLIP3-201ENST00000360535 MTMR6Q9Y217 621 aa14.5□□□□□ -0.09
CLIP3-201ENST00000360535 CEBPZQ03701 1054 aaKnown RBP14.49□□□□□ -0.09
CLIP3-201ENST00000360535 EAF2Q96CJ1 260 aaPredicted RBP14.49□□□□□ -0.09
CLIP3-201ENST00000360535 TPCN1Q9ULQ1 816 aa14.49□□□□□ -0.09
CLIP3-201ENST00000360535 NAP1L2Q9ULW6 460 aaPredicted RBP14.49□□□□□ -0.09
CLIP3-201ENST00000360535 ADCY9O60503 1353 aa14.49□□□□□ -0.09
CLIP3-201ENST00000360535 CREB3L3Q68CJ9 461 aa14.49□□□□□ -0.09
CLIP3-201ENST00000360535 SASS6Q6UVJ0 657 aa14.49□□□□□ -0.09
CLIP3-201ENST00000360535 THEMISQ8N1K5 641 aaPredicted RBP14.49□□□□□ -0.09
CLIP3-201ENST00000360535 CHGBP05060 677 aa14.48□□□□□ -0.09
CLIP3-201ENST00000360535 PLEKHO1Q53GL0 409 aaPredicted RBP14.48□□□□□ -0.09
CLIP3-201ENST00000360535 CDC37L1Q7L3B6 337 aa14.48□□□□□ -0.09
CLIP3-201ENST00000360535 IP6K1Q92551 441 aa14.48□□□□□ -0.09
CLIP3-201ENST00000360535 FMN2Q9NZ56 1722 aa14.48□□□□□ -0.09
CLIP3-201ENST00000360535 NOLC1Q14978 699 aaKnown RBP eCLIP14.48□□□□□ -0.09
CLIP3-201ENST00000360535 DRC7Q8IY82 874 aa14.48□□□□□ -0.09
CLIP3-201ENST00000360535 A0A0D9SFI3 127 aa14.48□□□□□ -0.09
CLIP3-201ENST00000360535 LRRC2Q9BYS8 371 aa14.48□□□□□ -0.09
CLIP3-201ENST00000360535 UBR1Q8IWV7 1749 aa14.48□□□□□ -0.09
CLIP3-201ENST00000360535 MCM5P33992 734 aa14.47□□□□□ -0.09
CLIP3-201ENST00000360535 DDX11Q96FC9 970 aa14.47□□□□□ -0.09
CLIP3-201ENST00000360535 XRN1Q8IZH2 1706 aaKnown RBP14.47□□□□□ -0.09
CLIP3-201ENST00000360535 CCDC171Q6TFL3 1326 aa14.47□□□□□ -0.09
CLIP3-201ENST00000360535 FGD1P98174 961 aa14.47□□□□□ -0.09
CLIP3-201ENST00000360535 FAM184AQ8NB25 1140 aa14.47□□□□□ -0.09
CLIP3-201ENST00000360535 KDM4AO75164 1064 aa14.47□□□□□ -0.09
CLIP3-201ENST00000360535 SASH1O94885 1247 aa14.47□□□□□ -0.09
CLIP3-201ENST00000360535 HSP90B1P14625 803 aaKnown RBP14.47□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms