RNA–Protein interactions for RNA: ENST00000359759.8

COL18A1-203, Transcript of collagen type XVIII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL18A1, Length 6,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-203ENST00000359759 RSPH14Q9UHP6 348 aa18.47■□□□□ 0.55
COL18A1-203ENST00000359759 CCDC194A0A1B0GVG4 234 aa18.47■□□□□ 0.55
COL18A1-203ENST00000359759 F6X3S4 739 aa18.47■□□□□ 0.55
COL18A1-203ENST00000359759 MXRA7P84157 204 aa18.47■□□□□ 0.55
COL18A1-203ENST00000359759 CUL5Q93034 780 aa18.47■□□□□ 0.55
COL18A1-203ENST00000359759 CAVIN4Q5BKX8 364 aa18.47■□□□□ 0.55
COL18A1-203ENST00000359759 C6orf163Q5TEZ5 329 aa18.47■□□□□ 0.55
COL18A1-203ENST00000359759 FBF1Q8TES7 1133 aa18.47■□□□□ 0.55
COL18A1-203ENST00000359759 ANKIB1Q9P2G1 1089 aa18.47■□□□□ 0.55
COL18A1-203ENST00000359759 FERP16591 822 aa18.46■□□□□ 0.55
COL18A1-203ENST00000359759 AKAP2Q9Y2D5 859 aa18.46■□□□□ 0.55
COL18A1-203ENST00000359759 TMPOP42166 694 aaKnown RBP18.46■□□□□ 0.55
COL18A1-203ENST00000359759 LIMCH1Q9UPQ0 1083 aa18.46■□□□□ 0.55
COL18A1-203ENST00000359759 TMOD2Q9NZR1 351 aa18.46■□□□□ 0.55
COL18A1-203ENST00000359759 BMS1Q14692 1282 aaKnown RBP18.46■□□□□ 0.55
COL18A1-203ENST00000359759 GRIPAP1Q4V328 841 aa18.46■□□□□ 0.55
COL18A1-203ENST00000359759 WDR78Q5VTH9 848 aa18.46■□□□□ 0.55
COL18A1-203ENST00000359759 STAC3Q96MF2 364 aa18.46■□□□□ 0.55
COL18A1-203ENST00000359759 ATAD2BQ9ULI0 1458 aa18.46■□□□□ 0.54
COL18A1-203ENST00000359759 IDEP14735 1019 aa18.46■□□□□ 0.54
COL18A1-203ENST00000359759 GIMAP6Q6P9H5 292 aa18.45■□□□□ 0.54
COL18A1-203ENST00000359759 PTCD1O75127 700 aaKnown RBP18.45■□□□□ 0.54
COL18A1-203ENST00000359759 PDIA4P13667 645 aaKnown RBP18.45■□□□□ 0.54
COL18A1-203ENST00000359759 NFE2L2Q16236 605 aa18.45■□□□□ 0.54
COL18A1-203ENST00000359759 NBPF8Q3BBV2 869 aa18.45■□□□□ 0.54
COL18A1-203ENST00000359759 ZNF287Q9HBT7 754 aa18.45■□□□□ 0.54
COL18A1-203ENST00000359759 CCDC196A0A1B0GTZ2 297 aa18.45■□□□□ 0.54
COL18A1-203ENST00000359759 ZSCAN23Q3MJ62 389 aa18.45■□□□□ 0.54
COL18A1-203ENST00000359759 RGS22Q8NE09 1264 aa18.45■□□□□ 0.54
COL18A1-203ENST00000359759 RAB34Q9BZG1 259 aa18.45■□□□□ 0.54
COL18A1-203ENST00000359759 RAD54L2Q9Y4B4 1467 aa18.45■□□□□ 0.54
COL18A1-203ENST00000359759 RTEL1-TNFRSF6BF6WH68 1400 aa18.44■□□□□ 0.54
COL18A1-203ENST00000359759 PLEKHH1Q9ULM0 1364 aa18.44■□□□□ 0.54
COL18A1-203ENST00000359759 TIGD1Q96MW7 591 aa18.44■□□□□ 0.54
COL18A1-203ENST00000359759 NEMFO60524 1076 aa18.44■□□□□ 0.54
COL18A1-203ENST00000359759 SYCP3Q8IZU3 236 aa18.44■□□□□ 0.54
COL18A1-203ENST00000359759 DDX19AQ9NUU7 478 aaKnown RBP18.44■□□□□ 0.54
COL18A1-203ENST00000359759 CCDC6Q16204 474 aa18.44■□□□□ 0.54
COL18A1-203ENST00000359759 TSHZ3Q63HK5 1081 aa18.44■□□□□ 0.54
COL18A1-203ENST00000359759 USHBP1Q8N6Y0 703 aa18.44■□□□□ 0.54
COL18A1-203ENST00000359759 CALML4Q96GE6 196 aa18.44■□□□□ 0.54
COL18A1-203ENST00000359759 TSNARE1Q96NA8 513 aa18.44■□□□□ 0.54
COL18A1-203ENST00000359759 IKBKGQ9Y6K9 419 aa18.43■□□□□ 0.54
COL18A1-203ENST00000359759 STX6O43752 255 aa18.43■□□□□ 0.54
COL18A1-203ENST00000359759 HSPA4P34932 840 aa18.43■□□□□ 0.54
COL18A1-203ENST00000359759 HAND2P61296 217 aa18.43■□□□□ 0.54
COL18A1-203ENST00000359759 IQCA1Q86XH1 822 aa18.43■□□□□ 0.54
COL18A1-203ENST00000359759 A0A087WZG4 1122 aa18.42■□□□□ 0.54
COL18A1-203ENST00000359759 CATIPQ7Z7H3 387 aa18.42■□□□□ 0.54
COL18A1-203ENST00000359759 ZNF692Q9BU19 519 aaPredicted RBP18.42■□□□□ 0.54
COL18A1-203ENST00000359759 HYPKQ9NX55 129 aa18.42■□□□□ 0.54
COL18A1-203ENST00000359759 LRRC9Q6ZRR7 1453 aa18.42■□□□□ 0.54
COL18A1-203ENST00000359759 ZC3H6P61129 1189 aaKnown RBP18.42■□□□□ 0.54
COL18A1-203ENST00000359759 AFAP1Q8N556 730 aa18.42■□□□□ 0.54
COL18A1-203ENST00000359759 ZMYND15Q9H091 742 aa18.42■□□□□ 0.54
COL18A1-203ENST00000359759 NCOA2Q15596 1464 aa18.42■□□□□ 0.54
COL18A1-203ENST00000359759 HMGB1P09429 215 aaKnown RBP18.42■□□□□ 0.54
COL18A1-203ENST00000359759 ZNF165P49910 485 aa18.41■□□□□ 0.54
COL18A1-203ENST00000359759 MCM6Q14566 821 aa18.41■□□□□ 0.54
COL18A1-203ENST00000359759 NOL12Q9UGY1 213 aaKnown RBP eCLIP18.41■□□□□ 0.541e-7■■□□□ 13.7
COL18A1-203ENST00000359759 V9GYY5 206 aaPredicted RBP18.41■□□□□ 0.54
COL18A1-203ENST00000359759 BAG4O95429 457 aaKnown RBP18.41■□□□□ 0.54
COL18A1-203ENST00000359759 ZNF219Q9P2Y4 722 aaPredicted RBP18.41■□□□□ 0.54
COL18A1-203ENST00000359759 ARL1P40616 181 aaPredicted RBP18.41■□□□□ 0.54
COL18A1-203ENST00000359759 MAP3K12Q12852 859 aa18.41■□□□□ 0.54
COL18A1-203ENST00000359759 MSL1Q68DK7 614 aa18.41■□□□□ 0.54
COL18A1-203ENST00000359759 AQRO60306 1485 aaKnown RBP eCLIP18.41■□□□□ 0.542e-7■■■■□ 26.2
COL18A1-203ENST00000359759 NSD3Q9BZ95 1437 aa18.41■□□□□ 0.54
COL18A1-203ENST00000359759 HCLS1P14317 486 aaPredicted RBP18.41■□□□□ 0.54
COL18A1-203ENST00000359759 KIAA0753Q2KHM9 967 aa18.41■□□□□ 0.54
COL18A1-203ENST00000359759 CCDC155Q8N6L0 562 aa18.4■□□□□ 0.54
COL18A1-203ENST00000359759 DYNC1I1O14576 645 aa18.4■□□□□ 0.54
COL18A1-203ENST00000359759 SLC26A6Q9BXS9 759 aa18.4■□□□□ 0.54
COL18A1-203ENST00000359759 USP16Q9Y5T5 823 aa18.4■□□□□ 0.54
COL18A1-203ENST00000359759 TMEM110-MUSTN1A8MSY1 372 aa18.4■□□□□ 0.54
COL18A1-203ENST00000359759 TAF7Q15545 349 aaPredicted RBP18.4■□□□□ 0.54
COL18A1-203ENST00000359759 SAMM50Q9Y512 469 aa18.4■□□□□ 0.54
COL18A1-203ENST00000359759 STARD3NLO95772 234 aa18.4■□□□□ 0.54
COL18A1-203ENST00000359759 AFMP43652 599 aa18.4■□□□□ 0.54
COL18A1-203ENST00000359759 PAXBP1Q9Y5B6 917 aa18.4■□□□□ 0.54
COL18A1-203ENST00000359759 TMEM67Q5HYA8 995 aa18.4■□□□□ 0.54
COL18A1-203ENST00000359759 MICALL1Q8N3F8 863 aa18.4■□□□□ 0.54
COL18A1-203ENST00000359759 PTGS1P23219 599 aa18.39■□□□□ 0.54
COL18A1-203ENST00000359759 SSH1Q8WYL5 1049 aa18.39■□□□□ 0.54
COL18A1-203ENST00000359759 TRIM47Q96LD4 638 aa18.39■□□□□ 0.54
COL18A1-203ENST00000359759 FCHSD2O94868 740 aa18.39■□□□□ 0.53
COL18A1-203ENST00000359759 CETN1Q12798 172 aa18.39■□□□□ 0.53
COL18A1-203ENST00000359759 SELENOSQ9BQE4 189 aa18.39■□□□□ 0.53
COL18A1-203ENST00000359759 FAM114A1Q8IWE2 563 aa18.39■□□□□ 0.53
COL18A1-203ENST00000359759 MICU3Q86XE3 530 aa18.39■□□□□ 0.53
COL18A1-203ENST00000359759 ZNF526Q8TF50 670 aaPredicted RBP18.39■□□□□ 0.53
COL18A1-203ENST00000359759 ATRIPQ8WXE1 791 aa18.39■□□□□ 0.53
COL18A1-203ENST00000359759 KIF4AO95239 1232 aa18.39■□□□□ 0.53
COL18A1-203ENST00000359759 GJC1P36383 396 aa18.39■□□□□ 0.53
COL18A1-203ENST00000359759 UBASH3AP57075 661 aa18.39■□□□□ 0.53
COL18A1-203ENST00000359759 AMPD3Q01432 767 aa18.39■□□□□ 0.53
COL18A1-203ENST00000359759 KRT222Q8N1A0 295 aa18.39■□□□□ 0.53
COL18A1-203ENST00000359759 TCP11L1Q9NUJ3 509 aa18.39■□□□□ 0.53
COL18A1-203ENST00000359759 SMIM23A6NLE4 172 aa18.38■□□□□ 0.53
COL18A1-203ENST00000359759 GOLIM4O00461 696 aa18.38■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms