RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 ANKRD2Q9GZV1 360 aa11.37□□□□□ -0.59
UPF2-202ENST00000357604 MAP3K15Q6ZN16 1313 aa11.37□□□□□ -0.59
UPF2-202ENST00000357604 CLEC4GQ6UXB4 293 aa11.37□□□□□ -0.59
UPF2-202ENST00000357604 AKAP2Q9Y2D5 859 aa11.37□□□□□ -0.59
UPF2-202ENST00000357604 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.36□□□□□ -0.59
UPF2-202ENST00000357604 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.36□□□□□ -0.59
UPF2-202ENST00000357604 GPR162Q16538 588 aa11.36□□□□□ -0.59
UPF2-202ENST00000357604 ANKIB1Q9P2G1 1089 aa11.36□□□□□ -0.59
UPF2-202ENST00000357604 GIGYF1O75420 1035 aaPredicted RBP11.36□□□□□ -0.59
UPF2-202ENST00000357604 CLUAP1Q96AJ1 413 aa11.36□□□□□ -0.59
UPF2-202ENST00000357604 TRIM34Q9BYJ4 488 aa11.36□□□□□ -0.59
UPF2-202ENST00000357604 CCDC191Q8NCU4 936 aa11.36□□□□□ -0.59
UPF2-202ENST00000357604 MARF1Q9Y4F3 1742 aaKnown RBP11.36□□□□□ -0.59
UPF2-202ENST00000357604 ANKRD18AQ8IVF6 992 aa11.36□□□□□ -0.59
UPF2-202ENST00000357604 TRIM35Q9UPQ4 493 aa11.36□□□□□ -0.59
UPF2-202ENST00000357604 IFIT2P09913 472 aaKnown RBP11.35□□□□□ -0.59
UPF2-202ENST00000357604 R3HDM1Q15032 1099 aaKnown RBP11.35□□□□□ -0.59
UPF2-202ENST00000357604 ATF7IPQ6VMQ6 1270 aa11.35□□□□□ -0.59
UPF2-202ENST00000357604 RRP1P56182 461 aaKnown RBP11.35□□□□□ -0.59
UPF2-202ENST00000357604 NARFQ9UHQ1 456 aa11.35□□□□□ -0.59
UPF2-202ENST00000357604 KCNQ2O43526 872 aa11.35□□□□□ -0.59
UPF2-202ENST00000357604 PDE3AQ14432 1141 aa11.35□□□□□ -0.59
UPF2-202ENST00000357604 USPL1Q5W0Q7 1092 aa11.35□□□□□ -0.59
UPF2-202ENST00000357604 METTL22Q9BUU2 404 aaPredicted RBP11.35□□□□□ -0.59
UPF2-202ENST00000357604 FKBP8Q14318 412 aa11.34□□□□□ -0.59
UPF2-202ENST00000357604 C2CD5Q86YS7 1000 aa11.34□□□□□ -0.59
UPF2-202ENST00000357604 MTFR1LQ9H019 292 aa11.34□□□□□ -0.59
UPF2-202ENST00000357604 CARMIL3Q8ND23 1372 aa11.34□□□□□ -0.59
UPF2-202ENST00000357604 COL3A1P02461 1466 aaPredicted RBP11.34□□□□□ -0.59
UPF2-202ENST00000357604 RGL2O15211 777 aa11.34□□□□□ -0.59
UPF2-202ENST00000357604 MSL1Q68DK7 614 aa11.34□□□□□ -0.59
UPF2-202ENST00000357604 UPF1Q92900 1129 aaKnown RBP eCLIP11.34□□□□□ -0.598e-7■□□□□ 9.6
UPF2-202ENST00000357604 SUPT16HQ9Y5B9 1047 aaKnown RBP11.34□□□□□ -0.59
UPF2-202ENST00000357604 DISP2A7MBM2 1401 aa11.34□□□□□ -0.59
UPF2-202ENST00000357604 CAVIN4Q5BKX8 364 aa11.34□□□□□ -0.59
UPF2-202ENST00000357604 CCDC158Q5M9N0 1113 aa11.34□□□□□ -0.59
UPF2-202ENST00000357604 CCDC184Q52MB2 194 aa11.33□□□□□ -0.6
UPF2-202ENST00000357604 SH3TC1Q8TE82 1336 aa11.33□□□□□ -0.6
UPF2-202ENST00000357604 SLC5A1P13866 664 aa11.33□□□□□ -0.6
UPF2-202ENST00000357604 JDP2Q8WYK2 163 aa11.33□□□□□ -0.6
UPF2-202ENST00000357604 ATF5Q9Y2D1 282 aaPredicted RBP11.33□□□□□ -0.6
UPF2-202ENST00000357604 GRIN3BO60391 1043 aa11.33□□□□□ -0.6
UPF2-202ENST00000357604 A1BGP04217 495 aa11.33□□□□□ -0.6
UPF2-202ENST00000357604 CYP19A1P11511 503 aaPredicted RBP11.33□□□□□ -0.6
UPF2-202ENST00000357604 SOCS7O14512 581 aa11.32□□□□□ -0.6
UPF2-202ENST00000357604 IRS4O14654 1257 aaPredicted RBP11.32□□□□□ -0.6
UPF2-202ENST00000357604 CC2D2BQ6DHV5 1058 aa11.32□□□□□ -0.6
UPF2-202ENST00000357604 SLF2Q8IX21 1173 aa11.32□□□□□ -0.6
UPF2-202ENST00000357604 LINS1Q8NG48 757 aa11.32□□□□□ -0.6
UPF2-202ENST00000357604 BCL9O00512 1426 aa11.32□□□□□ -0.6
UPF2-202ENST00000357604 ERC2O15083 957 aa11.32□□□□□ -0.6
UPF2-202ENST00000357604 PDE8AO60658 829 aa11.32□□□□□ -0.6
UPF2-202ENST00000357604 IFIT1P09914 478 aaKnown RBP11.32□□□□□ -0.6
UPF2-202ENST00000357604 ABCA3Q99758 1704 aa11.32□□□□□ -0.6
UPF2-202ENST00000357604 SERPINB2P05120 415 aa11.32□□□□□ -0.6
UPF2-202ENST00000357604 TTC39AQ5SRH9 613 aa11.32□□□□□ -0.6
UPF2-202ENST00000357604 PI4KAP2A4QPH2 592 aa11.32□□□□□ -0.6
UPF2-202ENST00000357604 MRPL50Q8N5N7 158 aaKnown RBP11.32□□□□□ -0.6
UPF2-202ENST00000357604 PI4KAP1Q8N8J0 262 aa11.32□□□□□ -0.6
UPF2-202ENST00000357604 C8orf58Q8NAV2 365 aa11.32□□□□□ -0.6
UPF2-202ENST00000357604 LMOD1P29536 600 aaPredicted RBP11.31□□□□□ -0.6
UPF2-202ENST00000357604 DALRD3Q5D0E6 543 aaKnown RBP11.31□□□□□ -0.6
UPF2-202ENST00000357604 TCIRG1Q13488 830 aa11.31□□□□□ -0.6
UPF2-202ENST00000357604 PLIN1O60240 522 aa11.31□□□□□ -0.6
UPF2-202ENST00000357604 ZNF804AQ7Z570 1209 aa11.31□□□□□ -0.6
UPF2-202ENST00000357604 CEP126Q9P2H0 1117 aa11.31□□□□□ -0.6
UPF2-202ENST00000357604 RARSP54136 660 aaKnown RBP11.3□□□□□ -0.6
UPF2-202ENST00000357604 CDCA7LQ96GN5 454 aa11.3□□□□□ -0.6
UPF2-202ENST00000357604 HDAC9Q9UKV0 1011 aa11.3□□□□□ -0.6
UPF2-202ENST00000357604 PSDA5PKW4 1024 aaPredicted RBP11.3□□□□□ -0.6
UPF2-202ENST00000357604 METTL24Q5JXM2 366 aa11.3□□□□□ -0.6
UPF2-202ENST00000357604 LINC00116Q8NCU8 138 aa11.3□□□□□ -0.6
UPF2-202ENST00000357604 ZBTB1Q9Y2K1 713 aa11.3□□□□□ -0.6
UPF2-202ENST00000357604 RTL5Q5HYW3 569 aaPredicted RBP11.3□□□□□ -0.6
UPF2-202ENST00000357604 DEFB132Q7Z7B7 95 aa11.3□□□□□ -0.6
UPF2-202ENST00000357604 RAB11FIP3O75154 756 aa11.29□□□□□ -0.6
UPF2-202ENST00000357604 NPR1P16066 1061 aa11.29□□□□□ -0.6
UPF2-202ENST00000357604 EIF6P56537 245 aaKnown RBP11.29□□□□□ -0.6
UPF2-202ENST00000357604 SSH1Q8WYL5 1049 aa11.29□□□□□ -0.6
UPF2-202ENST00000357604 PIM2Q9P1W9 311 aa11.29□□□□□ -0.6
UPF2-202ENST00000357604 RGPD1P0DJD0 1748 aa11.29□□□□□ -0.6
UPF2-202ENST00000357604 ATP5J2-PTCD1G3V325 749 aa11.29□□□□□ -0.6
UPF2-202ENST00000357604 RPAP2Q8IXW5 612 aaPredicted RBP11.29□□□□□ -0.6
UPF2-202ENST00000357604 TMOD2Q9NZR1 351 aa11.29□□□□□ -0.6
UPF2-202ENST00000357604 CEMIPQ8WUJ3 1361 aa11.29□□□□□ -0.6
UPF2-202ENST00000357604 C6orf229H3BNL8 230 aa11.29□□□□□ -0.6
UPF2-202ENST00000357604 ZSCAN25Q6NSZ9 544 aa11.29□□□□□ -0.6
UPF2-202ENST00000357604 NEUROD6Q96NK8 337 aa11.29□□□□□ -0.6
UPF2-202ENST00000357604 PEAK1Q9H792 1746 aa11.29□□□□□ -0.6
UPF2-202ENST00000357604 VAMP4O75379 141 aa11.28□□□□□ -0.6
UPF2-202ENST00000357604 ARHGEF1Q92888 912 aaKnown RBP11.28□□□□□ -0.6
UPF2-202ENST00000357604 PPP4R2Q9NY27 417 aa11.28□□□□□ -0.6
UPF2-202ENST00000357604 APBB1O00213 710 aa11.28□□□□□ -0.6
UPF2-202ENST00000357604 GRM8O00222 908 aa11.28□□□□□ -0.6
UPF2-202ENST00000357604 ZBTB7AO95365 584 aa11.28□□□□□ -0.6
UPF2-202ENST00000357604 MVPQ14764 893 aaKnown RBP11.28□□□□□ -0.6
UPF2-202ENST00000357604 MASTLQ96GX5 879 aa11.28□□□□□ -0.6
UPF2-202ENST00000357604 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.28□□□□□ -0.6
UPF2-202ENST00000357604 ZNF219Q9P2Y4 722 aaPredicted RBP11.28□□□□□ -0.6
UPF2-202ENST00000357604 BCS1LQ9Y276 419 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms