RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 SLC5A1P13866 664 aa8.55□□□□□ -1.04
VPS13A-202ENST00000357409 CWF19L2Q2TBE0 894 aaKnown RBP8.55□□□□□ -1.04
VPS13A-202ENST00000357409 PPP4R3AQ6IN85 833 aa8.55□□□□□ -1.04
VPS13A-202ENST00000357409 APBA3O96018 575 aa8.55□□□□□ -1.04
VPS13A-202ENST00000357409 TSPY3P0CV98 308 aa8.55□□□□□ -1.04
VPS13A-202ENST00000357409 TSPY8P0CW00 308 aa8.55□□□□□ -1.04
VPS13A-202ENST00000357409 LARP1Q6PKG0 1096 aaKnown RBP8.55□□□□□ -1.04
VPS13A-202ENST00000357409 DYDC1Q8WWB3 177 aa8.55□□□□□ -1.04
VPS13A-202ENST00000357409 PPP2R5DQ14738 602 aa8.55□□□□□ -1.04
VPS13A-202ENST00000357409 SPOUT1Q5T280 376 aaKnown RBP8.55□□□□□ -1.04
VPS13A-202ENST00000357409 APBB1IPQ7Z5R6 666 aaPredicted RBP8.55□□□□□ -1.04
VPS13A-202ENST00000357409 ZCRB1Q8TBF4 217 aaKnown RBP8.55□□□□□ -1.04
VPS13A-202ENST00000357409 KRT85P78386 507 aa8.54□□□□□ -1.04
VPS13A-202ENST00000357409 STIM1Q13586 685 aa8.54□□□□□ -1.04
VPS13A-202ENST00000357409 ZMYND15Q9H091 742 aa8.54□□□□□ -1.04
VPS13A-202ENST00000357409 TNIP1Q15025 636 aa8.54□□□□□ -1.04
VPS13A-202ENST00000357409 MARCKSP29966 332 aaPredicted RBP8.54□□□□□ -1.04
VPS13A-202ENST00000357409 TIMM10P62072 90 aa8.54□□□□□ -1.04
VPS13A-202ENST00000357409 DDB1Q16531 1140 aa8.54□□□□□ -1.04
VPS13A-202ENST00000357409 TBC1D10BQ4KMP7 808 aaPredicted RBP8.54□□□□□ -1.04
VPS13A-202ENST00000357409 CPXCR1Q8N123 301 aa8.54□□□□□ -1.04
VPS13A-202ENST00000357409 ST5P78524 1137 aa8.54□□□□□ -1.04
VPS13A-202ENST00000357409 CTCFLQ8NI51 663 aaPredicted RBP8.54□□□□□ -1.04
VPS13A-202ENST00000357409 USP16Q9Y5T5 823 aa8.54□□□□□ -1.04
VPS13A-202ENST00000357409 HCLS1P14317 486 aaPredicted RBP8.54□□□□□ -1.04
VPS13A-202ENST00000357409 KCNA4P22459 653 aa8.54□□□□□ -1.04
VPS13A-202ENST00000357409 LMBR1LQ6UX01 489 aa8.54□□□□□ -1.04
VPS13A-202ENST00000357409 FANCD2Q9BXW9 1451 aa8.54□□□□□ -1.04
VPS13A-202ENST00000357409 NAIPQ13075 1403 aa8.54□□□□□ -1.04
VPS13A-202ENST00000357409 C8orf76Q96K31 380 aa8.54□□□□□ -1.04
VPS13A-202ENST00000357409 ZBED9Q6R2W3 1325 aa8.54□□□□□ -1.04
VPS13A-202ENST00000357409 TAF5LO75529 589 aa8.54□□□□□ -1.04
VPS13A-202ENST00000357409 FLIIQ13045 1269 aa8.54□□□□□ -1.04
VPS13A-202ENST00000357409 MVPQ14764 893 aaKnown RBP8.54□□□□□ -1.04
VPS13A-202ENST00000357409 DZIP3Q86Y13 1208 aaKnown RBP8.54□□□□□ -1.04
VPS13A-202ENST00000357409 KLHDC4Q8TBB5 520 aa8.54□□□□□ -1.04
VPS13A-202ENST00000357409 GPCPD1Q9NPB8 672 aa8.54□□□□□ -1.04
VPS13A-202ENST00000357409 CDR1P51861 262 aa8.54□□□□□ -1.04
VPS13A-202ENST00000357409 TICAM2Q86XR7 235 aa8.54□□□□□ -1.04
VPS13A-202ENST00000357409 OTUD6BQ8N6M0 293 aa8.54□□□□□ -1.04
VPS13A-202ENST00000357409 ACEP12821 1306 aa8.53□□□□□ -1.04
VPS13A-202ENST00000357409 IFRD2Q12894 506 aaPredicted RBP8.53□□□□□ -1.04
VPS13A-202ENST00000357409 NFE2L2Q16236 605 aa8.53□□□□□ -1.04
VPS13A-202ENST00000357409 FCHSD1Q86WN1 690 aa8.53□□□□□ -1.04
VPS13A-202ENST00000357409 CHPF2Q9P2E5 772 aa8.53□□□□□ -1.04
VPS13A-202ENST00000357409 SMIM23A6NLE4 172 aa8.53□□□□□ -1.04
VPS13A-202ENST00000357409 STX17P56962 302 aa8.53□□□□□ -1.04
VPS13A-202ENST00000357409 NUP62CLQ9H1M0 184 aa8.53□□□□□ -1.04
VPS13A-202ENST00000357409 PLEKHA4Q9H4M7 779 aa8.53□□□□□ -1.04
VPS13A-202ENST00000357409 SPECC1Q5M775 1068 aa8.53□□□□□ -1.04
VPS13A-202ENST00000357409 GCC1Q96CN9 775 aa8.53□□□□□ -1.04
VPS13A-202ENST00000357409 EPB41L2O43491 1005 aaKnown RBP8.53□□□□□ -1.04
VPS13A-202ENST00000357409 MTIF2P46199 727 aaKnown RBP8.53□□□□□ -1.04
VPS13A-202ENST00000357409 DOK7Q18PE1 504 aa8.53□□□□□ -1.04
VPS13A-202ENST00000357409 SSH1Q8WYL5 1049 aa8.53□□□□□ -1.04
VPS13A-202ENST00000357409 ARGLU1Q9NWB6 273 aaPredicted RBP8.53□□□□□ -1.04
VPS13A-202ENST00000357409 MAP2K1Q02750 393 aaPredicted RBP8.53□□□□□ -1.04
VPS13A-202ENST00000357409 OGFOD1Q8N543 542 aa8.53□□□□□ -1.04
VPS13A-202ENST00000357409 CFAP45Q9UL16 551 aa8.53□□□□□ -1.04
VPS13A-202ENST00000357409 PRG4Q92954 1404 aaPredicted RBP8.53□□□□□ -1.04
VPS13A-202ENST00000357409 ABL1P00519 1130 aa8.53□□□□□ -1.04
VPS13A-202ENST00000357409 MRPS9P82933 396 aaKnown RBP8.53□□□□□ -1.04
VPS13A-202ENST00000357409 XAGE3Q8WTP9 111 aa8.53□□□□□ -1.04
VPS13A-202ENST00000357409 ZNF594Q96JF6 807 aaPredicted RBP8.53□□□□□ -1.04
VPS13A-202ENST00000357409 ATF5Q9Y2D1 282 aaPredicted RBP8.53□□□□□ -1.04
VPS13A-202ENST00000357409 MAPK8IP1Q9UQF2 711 aa8.53□□□□□ -1.04
VPS13A-202ENST00000357409 NOP9Q86U38 636 aaKnown RBP8.53□□□□□ -1.04
VPS13A-202ENST00000357409 hCG_1642624A0A1W2PR95 340 aa8.52□□□□□ -1.04
VPS13A-202ENST00000357409 PHACTR2O75167 634 aa8.52□□□□□ -1.04
VPS13A-202ENST00000357409 FAM89AQ96GI7 184 aa8.52□□□□□ -1.04
VPS13A-202ENST00000357409 HOMER2Q9NSB8 354 aa8.52□□□□□ -1.04
VPS13A-202ENST00000357409 TOM1O60784 492 aa8.52□□□□□ -1.05
VPS13A-202ENST00000357409 KIF4BQ2VIQ3 1234 aa8.52□□□□□ -1.05
VPS13A-202ENST00000357409 CLSTN2Q9H4D0 955 aa8.52□□□□□ -1.05
VPS13A-202ENST00000357409 AEBP1Q8IUX7 1158 aa8.52□□□□□ -1.05
VPS13A-202ENST00000357409 ANO3Q9BYT9 981 aa8.52□□□□□ -1.05
VPS13A-202ENST00000357409 HIP1O00291 1037 aa8.52□□□□□ -1.05
VPS13A-202ENST00000357409 SSFA2P28290 1259 aa8.52□□□□□ -1.05
VPS13A-202ENST00000357409 NLRP3Q96P20 1036 aa8.52□□□□□ -1.05
VPS13A-202ENST00000357409 ERBINQ96RT1 1412 aa8.52□□□□□ -1.05
VPS13A-202ENST00000357409 WIZO95785 1651 aa8.52□□□□□ -1.05
VPS13A-202ENST00000357409 ANKRD18AQ8IVF6 992 aa8.52□□□□□ -1.05
VPS13A-202ENST00000357409 NUP88Q99567 741 aaPredicted RBP8.52□□□□□ -1.05
VPS13A-202ENST00000357409 MIA2Q96PC5 1412 aa8.52□□□□□ -1.05
VPS13A-202ENST00000357409 PHLDB1Q86UU1 1377 aa8.52□□□□□ -1.05
VPS13A-202ENST00000357409 A1BGP04217 495 aa8.52□□□□□ -1.05
VPS13A-202ENST00000357409 ARHGAP27Q6ZUM4 889 aa8.52□□□□□ -1.05
VPS13A-202ENST00000357409 CHMP2AO43633 222 aa8.52□□□□□ -1.05
VPS13A-202ENST00000357409 KIF1BPQ96EK5 621 aa8.52□□□□□ -1.05
VPS13A-202ENST00000357409 AKAP2Q9Y2D5 859 aa8.52□□□□□ -1.05
VPS13A-202ENST00000357409 CPA1P15085 419 aa8.52□□□□□ -1.05
VPS13A-202ENST00000357409 GBP2P32456 591 aaPredicted RBP8.52□□□□□ -1.05
VPS13A-202ENST00000357409 PNISRQ8TF01 805 aaKnown RBP8.52□□□□□ -1.05
VPS13A-202ENST00000357409 RAD51AP2Q09MP3 1159 aa8.51□□□□□ -1.05
VPS13A-202ENST00000357409 IFNL2Q8IZJ0 200 aa8.51□□□□□ -1.05
VPS13A-202ENST00000357409 STAC3Q96MF2 364 aa8.51□□□□□ -1.05
VPS13A-202ENST00000357409 RNASE9P60153 205 aaKnown RBP8.51□□□□□ -1.05
VPS13A-202ENST00000357409 RNF169Q8NCN4 708 aa8.51□□□□□ -1.05
VPS13A-202ENST00000357409 MEIS3Q99687 375 aa8.51□□□□□ -1.05
VPS13A-202ENST00000357409 PARP3Q9Y6F1 533 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms