RNA–Protein interactions for RNA: ENST00000357250.10

COL9A1-202, Transcript of collagen type IX alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A1, Length 4,761 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-202ENST00000357250 PTPN14Q15678 1187 aa13.67□□□□□ -0.22
COL9A1-202ENST00000357250 TAF4BQ92750 862 aa13.67□□□□□ -0.22
COL9A1-202ENST00000357250 DDX11Q96FC9 970 aa13.67□□□□□ -0.22
COL9A1-202ENST00000357250 RLBP1P12271 317 aa13.67□□□□□ -0.22
COL9A1-202ENST00000357250 TSHZ3Q63HK5 1081 aa13.67□□□□□ -0.22
COL9A1-202ENST00000357250 TSPYL6Q8N831 410 aa13.67□□□□□ -0.22
COL9A1-202ENST00000357250 KIF18AQ8NI77 898 aa13.67□□□□□ -0.22
COL9A1-202ENST00000357250 MBD5Q9P267 1494 aa13.66□□□□□ -0.22
COL9A1-202ENST00000357250 C8orf58Q8NAV2 365 aa13.66□□□□□ -0.22
COL9A1-202ENST00000357250 ZHX3Q9H4I2 956 aa13.66□□□□□ -0.22
COL9A1-202ENST00000357250 TMOD2Q9NZR1 351 aa13.66□□□□□ -0.22
COL9A1-202ENST00000357250 ZNF213O14771 459 aa13.66□□□□□ -0.22
COL9A1-202ENST00000357250 ANAPC15P60006 121 aa13.66□□□□□ -0.22
COL9A1-202ENST00000357250 JARID2Q92833 1246 aaPredicted RBP13.66□□□□□ -0.22
COL9A1-202ENST00000357250 TNPO1Q92973 898 aaKnown RBP13.66□□□□□ -0.22
COL9A1-202ENST00000357250 DESP17661 470 aa13.66□□□□□ -0.22
COL9A1-202ENST00000357250 EIF4A2Q14240 407 aaKnown RBP13.66□□□□□ -0.22
COL9A1-202ENST00000357250 TTC22Q5TAA0 569 aa13.66□□□□□ -0.22
COL9A1-202ENST00000357250 SLF2Q8IX21 1173 aa13.66□□□□□ -0.22
COL9A1-202ENST00000357250 LRRC59Q96AG4 307 aaKnown RBP13.66□□□□□ -0.22
COL9A1-202ENST00000357250 SEC63Q9UGP8 760 aaKnown RBP13.66□□□□□ -0.22
COL9A1-202ENST00000357250 UHRF1BP1Q6BDS2 1440 aa13.65□□□□□ -0.22
COL9A1-202ENST00000357250 TBC1D9Q6ZT07 1266 aa13.65□□□□□ -0.22
COL9A1-202ENST00000357250 KLHL40Q2TBA0 621 aa13.65□□□□□ -0.22
COL9A1-202ENST00000357250 JAKMIP3Q5VZ66 844 aa13.65□□□□□ -0.22
COL9A1-202ENST00000357250 KIAA1328Q86T90 577 aa13.65□□□□□ -0.22
COL9A1-202ENST00000357250 FERMT3Q86UX7 667 aa13.65□□□□□ -0.22
COL9A1-202ENST00000357250 KAT6BQ8WYB5 2073 aa13.65□□□□□ -0.22
COL9A1-202ENST00000357250 ANKRD18BA2A2Z9 1011 aa13.65□□□□□ -0.22
COL9A1-202ENST00000357250 USP8P40818 1118 aa13.65□□□□□ -0.22
COL9A1-202ENST00000357250 MAP9Q49MG5 647 aa13.65□□□□□ -0.22
COL9A1-202ENST00000357250 FKBP15Q5T1M5 1219 aa13.65□□□□□ -0.22
COL9A1-202ENST00000357250 STK11IPQ8N1F8 1099 aa13.65□□□□□ -0.22
COL9A1-202ENST00000357250 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.65□□□□□ -0.22
COL9A1-202ENST00000357250 ATP7AQ04656 1500 aa13.64□□□□□ -0.23
COL9A1-202ENST00000357250 GOLGA6L9A6NEM1 432 aa13.64□□□□□ -0.23
COL9A1-202ENST00000357250 ABCF2Q9UG63 623 aa13.64□□□□□ -0.23
COL9A1-202ENST00000357250 POLR3AO14802 1390 aaPredicted RBP13.64□□□□□ -0.23
COL9A1-202ENST00000357250 CETN2P41208 172 aa13.64□□□□□ -0.23
COL9A1-202ENST00000357250 SLC12A7Q9Y666 1083 aa13.64□□□□□ -0.23
COL9A1-202ENST00000357250 NUCB1Q02818 461 aa13.64□□□□□ -0.23
COL9A1-202ENST00000357250 SPA17Q15506 151 aa13.64□□□□□ -0.23
COL9A1-202ENST00000357250 KANK3Q6NY19 840 aa13.64□□□□□ -0.23
COL9A1-202ENST00000357250 TMCO3Q6UWJ1 677 aa13.64□□□□□ -0.23
COL9A1-202ENST00000357250 IFNL2Q8IZJ0 200 aa13.64□□□□□ -0.23
COL9A1-202ENST00000357250 TSG101Q99816 390 aa13.64□□□□□ -0.23
COL9A1-202ENST00000357250 ZSCAN16Q9H4T2 348 aaPredicted RBP13.64□□□□□ -0.23
COL9A1-202ENST00000357250 STX6O43752 255 aa13.63□□□□□ -0.23
COL9A1-202ENST00000357250 SSBP05455 408 aaKnown RBP eCLIP13.63□□□□□ -0.23
COL9A1-202ENST00000357250 VPS36Q86VN1 386 aa13.63□□□□□ -0.23
COL9A1-202ENST00000357250 KIF5CO60282 957 aa13.63□□□□□ -0.23
COL9A1-202ENST00000357250 POTEJP0CG39 1038 aa13.63□□□□□ -0.23
COL9A1-202ENST00000357250 ZNF76P36508 570 aa13.63□□□□□ -0.23
COL9A1-202ENST00000357250 TNIP1Q15025 636 aa13.63□□□□□ -0.23
COL9A1-202ENST00000357250 A0A087WZG4 1122 aa13.63□□□□□ -0.23
COL9A1-202ENST00000357250 TOP1P11387 765 aaKnown RBP13.63□□□□□ -0.23
COL9A1-202ENST00000357250 UBE2HP62256 183 aa13.63□□□□□ -0.23
COL9A1-202ENST00000357250 EIF2AK4Q9P2K8 1649 aaKnown RBP13.63□□□□□ -0.23
COL9A1-202ENST00000357250 SSFA2P28290 1259 aa13.63□□□□□ -0.23
COL9A1-202ENST00000357250 RBM10P98175 930 aaKnown RBP13.63□□□□□ -0.23
COL9A1-202ENST00000357250 TAF3Q5VWG9 929 aa13.63□□□□□ -0.23
COL9A1-202ENST00000357250 CCDC12Q8WUD4 166 aaPredicted RBP13.63□□□□□ -0.23
COL9A1-202ENST00000357250 ZFYP08048 801 aaPredicted RBP13.62□□□□□ -0.23
COL9A1-202ENST00000357250 SSRP1Q08945 709 aaKnown RBP13.62□□□□□ -0.23
COL9A1-202ENST00000357250 SEPT7Q16181 437 aaKnown RBP13.62□□□□□ -0.23
COL9A1-202ENST00000357250 TMEM266Q2M3C6 531 aa13.62□□□□□ -0.23
COL9A1-202ENST00000357250 MKNK2Q9HBH9 465 aa13.62□□□□□ -0.23
COL9A1-202ENST00000357250 SOS1Q07889 1333 aaPredicted RBP13.62□□□□□ -0.23
COL9A1-202ENST00000357250 YEATS2Q9ULM3 1422 aa13.62□□□□□ -0.23
COL9A1-202ENST00000357250 ALDH1L1O75891 902 aa13.62□□□□□ -0.23
COL9A1-202ENST00000357250 USP5P45974 858 aa13.62□□□□□ -0.23
COL9A1-202ENST00000357250 SLC39A6Q13433 755 aa13.62□□□□□ -0.23
COL9A1-202ENST00000357250 STX1AQ16623 288 aa13.62□□□□□ -0.23
COL9A1-202ENST00000357250 ANKRD24Q8TF21 1146 aa13.62□□□□□ -0.23
COL9A1-202ENST00000357250 ARHGEF12Q9NZN5 1544 aa13.62□□□□□ -0.23
COL9A1-202ENST00000357250 COL17A1Q9UMD9 1497 aaPredicted RBP13.62□□□□□ -0.23
COL9A1-202ENST00000357250 NEFHP12036 1026 aa13.62□□□□□ -0.23
COL9A1-202ENST00000357250 SF3B2Q13435 895 aaKnown RBP13.62□□□□□ -0.23
COL9A1-202ENST00000357250 POTEB2H3BUK9 544 aa13.61□□□□□ -0.23
COL9A1-202ENST00000357250 LDHCP07864 332 aa13.61□□□□□ -0.23
COL9A1-202ENST00000357250 ZSCAN29Q8IWY8 852 aaPredicted RBP13.61□□□□□ -0.23
COL9A1-202ENST00000357250 CCDC8Q9H0W5 538 aaPredicted RBP13.61□□□□□ -0.23
COL9A1-202ENST00000357250 YTHDC2Q9H6S0 1430 aaKnown RBP13.61□□□□□ -0.23
COL9A1-202ENST00000357250 BAG4O95429 457 aaKnown RBP13.61□□□□□ -0.23
COL9A1-202ENST00000357250 RBM5P52756 815 aaKnown RBP eCLIP13.61□□□□□ -0.23
COL9A1-202ENST00000357250 ERCC6L2Q5T890 1561 aa13.61□□□□□ -0.23
COL9A1-202ENST00000357250 GOLGA8AA7E2F4 631 aa13.61□□□□□ -0.23
COL9A1-202ENST00000357250 GOLGA8BA8MQT2 603 aa13.61□□□□□ -0.23
COL9A1-202ENST00000357250 POLR3DP05423 398 aaPredicted RBP13.61□□□□□ -0.23
COL9A1-202ENST00000357250 BICDL1Q6ZP65 573 aa13.61□□□□□ -0.23
COL9A1-202ENST00000357250 FAM177A1Q8N128 213 aaPredicted RBP13.61□□□□□ -0.23
COL9A1-202ENST00000357250 MEIS3Q99687 375 aa13.61□□□□□ -0.23
COL9A1-202ENST00000357250 CRACR2AQ9BSW2 395 aa13.61□□□□□ -0.23
COL9A1-202ENST00000357250 DNAI2Q9GZS0 605 aa13.61□□□□□ -0.23
COL9A1-202ENST00000357250 CWC25Q9NXE8 425 aaPredicted RBP13.61□□□□□ -0.23
COL9A1-202ENST00000357250 PI4KAP2A4QPH2 592 aa13.6□□□□□ -0.23
COL9A1-202ENST00000357250 BMP15O95972 392 aa13.6□□□□□ -0.23
COL9A1-202ENST00000357250 KIF5BP33176 963 aa13.6□□□□□ -0.23
COL9A1-202ENST00000357250 CATIPQ7Z7H3 387 aa13.6□□□□□ -0.23
COL9A1-202ENST00000357250 PI4KAP1Q8N8J0 262 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms