RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 TRIM5Q9C035 493 aa8.08□□□□□ -1.12
VPS39-202ENST00000348544 CPS1P31327 1500 aa8.08□□□□□ -1.12
VPS39-202ENST00000348544 AOX1Q06278 1338 aa8.08□□□□□ -1.12
VPS39-202ENST00000348544 CAPN2P17655 700 aa8.07□□□□□ -1.12
VPS39-202ENST00000348544 CASTP20810 708 aaKnown RBP8.07□□□□□ -1.12
VPS39-202ENST00000348544 SULT6B1Q6IMI4 303 aa8.07□□□□□ -1.12
VPS39-202ENST00000348544 ARHGAP30Q7Z6I6 1101 aaPredicted RBP8.07□□□□□ -1.12
VPS39-202ENST00000348544 ZNF446Q9NWS9 450 aa8.07□□□□□ -1.12
VPS39-202ENST00000348544 DACT1Q9NYF0 836 aa8.07□□□□□ -1.12
VPS39-202ENST00000348544 EDC4Q6P2E9 1401 aaKnown RBP8.07□□□□□ -1.12
VPS39-202ENST00000348544 NRKQ7Z2Y5 1582 aa8.07□□□□□ -1.12
VPS39-202ENST00000348544 ERICH4A6NGS2 130 aa8.07□□□□□ -1.12
VPS39-202ENST00000348544 ELF2Q15723 593 aa8.07□□□□□ -1.12
VPS39-202ENST00000348544 ADCK5Q3MIX3 580 aa8.07□□□□□ -1.12
VPS39-202ENST00000348544 RBM43Q6ZSC3 357 aaKnown RBP8.07□□□□□ -1.12
VPS39-202ENST00000348544 NYAP1Q6ZVC0 841 aa8.07□□□□□ -1.12
VPS39-202ENST00000348544 FERMT3Q86UX7 667 aa8.07□□□□□ -1.12
VPS39-202ENST00000348544 IPO4Q8TEX9 1081 aaKnown RBP8.07□□□□□ -1.12
VPS39-202ENST00000348544 CLIP2Q9UDT6 1046 aa8.07□□□□□ -1.12
VPS39-202ENST00000348544 SPG7Q9UQ90 795 aa8.07□□□□□ -1.12
VPS39-202ENST00000348544 LRRFIP2Q9Y608 721 aaKnown RBP8.07□□□□□ -1.12
VPS39-202ENST00000348544 TTC21AQ8NDW8 1320 aa8.07□□□□□ -1.12
VPS39-202ENST00000348544 CCDC66A2RUB6 948 aa8.06□□□□□ -1.12
VPS39-202ENST00000348544 COL9A3Q14050 684 aaPredicted RBP8.06□□□□□ -1.12
VPS39-202ENST00000348544 CDC37L1Q7L3B6 337 aa8.06□□□□□ -1.12
VPS39-202ENST00000348544 NECAB1Q8N987 351 aa8.06□□□□□ -1.12
VPS39-202ENST00000348544 TIGD1Q96MW7 591 aa8.06□□□□□ -1.12
VPS39-202ENST00000348544 TNMDQ9H2S6 317 aa8.06□□□□□ -1.12
VPS39-202ENST00000348544 XRN1Q8IZH2 1706 aaKnown RBP8.06□□□□□ -1.12
VPS39-202ENST00000348544 TMEM131LA2VDJ0 1609 aa8.06□□□□□ -1.12
VPS39-202ENST00000348544 ALKQ9UM73 1620 aa8.06□□□□□ -1.12
VPS39-202ENST00000348544 TULP2O00295 520 aa8.06□□□□□ -1.12
VPS39-202ENST00000348544 EIF4A2Q14240 407 aaKnown RBP8.06□□□□□ -1.12
VPS39-202ENST00000348544 ME3Q16798 604 aa8.06□□□□□ -1.12
VPS39-202ENST00000348544 WAPLQ7Z5K2 1190 aa8.06□□□□□ -1.12
VPS39-202ENST00000348544 DNAJC25Q9H1X3 360 aa8.06□□□□□ -1.12
VPS39-202ENST00000348544 ELP1O95163 1332 aa8.06□□□□□ -1.12
VPS39-202ENST00000348544 PTH1RQ03431 593 aa8.06□□□□□ -1.12
VPS39-202ENST00000348544 LRRC8AQ8IWT6 810 aa8.06□□□□□ -1.12
VPS39-202ENST00000348544 DDX54Q8TDD1 881 aaKnown RBP8.06□□□□□ -1.12
VPS39-202ENST00000348544 SOS1Q07889 1333 aaPredicted RBP8.05□□□□□ -1.12
VPS39-202ENST00000348544 CRYBG1Q9Y4K1 1723 aa8.05□□□□□ -1.12
VPS39-202ENST00000348544 MLH3Q9UHC1 1453 aa8.05□□□□□ -1.12
VPS39-202ENST00000348544 GNAI3P08754 354 aa8.05□□□□□ -1.12
VPS39-202ENST00000348544 CDC25BP30305 580 aa8.05□□□□□ -1.12
VPS39-202ENST00000348544 KRT85P78386 507 aa8.05□□□□□ -1.12
VPS39-202ENST00000348544 VPS53Q5VIR6 699 aa8.05□□□□□ -1.12
VPS39-202ENST00000348544 CWC27Q6UX04 472 aaKnown RBP8.05□□□□□ -1.12
VPS39-202ENST00000348544 KIF1BPQ96EK5 621 aa8.05□□□□□ -1.12
VPS39-202ENST00000348544 CLSTN2Q9H4D0 955 aa8.05□□□□□ -1.12
VPS39-202ENST00000348544 PDRG1Q9NUG6 133 aa8.05□□□□□ -1.12
VPS39-202ENST00000348544 NCKAP5LQ9HCH0 1330 aa8.05□□□□□ -1.12
VPS39-202ENST00000348544 FOXO3O43524 673 aa8.05□□□□□ -1.12
VPS39-202ENST00000348544 NR1I2O75469 434 aa8.05□□□□□ -1.12
VPS39-202ENST00000348544 CDK11BP21127 795 aaKnown RBP8.05□□□□□ -1.12
VPS39-202ENST00000348544 ZNF165P49910 485 aa8.05□□□□□ -1.12
VPS39-202ENST00000348544 SLC20A2Q08357 652 aa8.05□□□□□ -1.12
VPS39-202ENST00000348544 SLFNL1Q499Z3 407 aa8.05□□□□□ -1.12
VPS39-202ENST00000348544 ERO1AQ96HE7 468 aa8.05□□□□□ -1.12
VPS39-202ENST00000348544 JAKMIP1Q96N16 626 aaKnown RBP8.05□□□□□ -1.12
VPS39-202ENST00000348544 TFIP11Q9UBB9 837 aaKnown RBP8.05□□□□□ -1.12
VPS39-202ENST00000348544 CCDC171Q6TFL3 1326 aa8.04□□□□□ -1.12
VPS39-202ENST00000348544 ARHGEF10O15013 1369 aa8.04□□□□□ -1.12
VPS39-202ENST00000348544 SETD1AO15047 1707 aaKnown RBP8.04□□□□□ -1.12
VPS39-202ENST00000348544 DLC1Q96QB1 1528 aa8.04□□□□□ -1.12
VPS39-202ENST00000348544 ATXN8OSP0DMR3 200 aa8.04□□□□□ -1.12
VPS39-202ENST00000348544 CCZ1BP86790 482 aa8.04□□□□□ -1.12
VPS39-202ENST00000348544 CCZ1P86791 482 aaPredicted RBP8.04□□□□□ -1.12
VPS39-202ENST00000348544 FLIIQ13045 1269 aa8.04□□□□□ -1.12
VPS39-202ENST00000348544 LRRN4CLQ8ND94 238 aa8.04□□□□□ -1.12
VPS39-202ENST00000348544 COG3Q96JB2 828 aa8.04□□□□□ -1.12
VPS39-202ENST00000348544 ZSWIM6Q9HCJ5 1215 aa8.04□□□□□ -1.12
VPS39-202ENST00000348544 SH2B1Q9NRF2 756 aaPredicted RBP8.04□□□□□ -1.12
VPS39-202ENST00000348544 TPCN1Q9ULQ1 816 aa8.04□□□□□ -1.12
VPS39-202ENST00000348544 FAM208AQ9UK61 1670 aaKnown RBP8.04□□□□□ -1.12
VPS39-202ENST00000348544 IQCB1Q15051 598 aa8.04□□□□□ -1.12
VPS39-202ENST00000348544 PTPN14Q15678 1187 aa8.04□□□□□ -1.12
VPS39-202ENST00000348544 LARP1BQ659C4 914 aaKnown RBP8.04□□□□□ -1.12
VPS39-202ENST00000348544 PRPF40BQ6NWY9 871 aaKnown RBP8.04□□□□□ -1.12
VPS39-202ENST00000348544 SSH3Q8TE77 659 aa8.04□□□□□ -1.12
VPS39-202ENST00000348544 PGBD1Q96JS3 809 aa8.04□□□□□ -1.12
VPS39-202ENST00000348544 ZSCAN31Q96LW9 406 aaPredicted RBP8.04□□□□□ -1.12
VPS39-202ENST00000348544 USP44Q9H0E7 712 aa8.04□□□□□ -1.12
VPS39-202ENST00000348544 DDX19AQ9NUU7 478 aaKnown RBP8.04□□□□□ -1.12
VPS39-202ENST00000348544 TRMT1Q9NXH9 659 aaKnown RBP8.04□□□□□ -1.12
VPS39-202ENST00000348544 TSPYL4Q9UJ04 414 aa8.04□□□□□ -1.12
VPS39-202ENST00000348544 TTC21BQ7Z4L5 1316 aa8.04□□□□□ -1.12
VPS39-202ENST00000348544 SKILP12757 684 aa8.03□□□□□ -1.12
VPS39-202ENST00000348544 CYP2C19P33261 490 aa8.03□□□□□ -1.12
VPS39-202ENST00000348544 C11orf57Q6ZUT1 292 aaPredicted RBP8.03□□□□□ -1.12
VPS39-202ENST00000348544 PLCD3Q8N3E9 789 aa8.03□□□□□ -1.12
VPS39-202ENST00000348544 LEO1Q8WVC0 666 aaPredicted RBP8.03□□□□□ -1.12
VPS39-202ENST00000348544 CALCOCO1Q9P1Z2 691 aa8.03□□□□□ -1.12
VPS39-202ENST00000348544 FHOD1Q9Y613 1164 aa8.03□□□□□ -1.12
VPS39-202ENST00000348544 NPHP1O15259 732 aa8.03□□□□□ -1.12
VPS39-202ENST00000348544 H2AFXP16104 143 aaPredicted RBP8.03□□□□□ -1.12
VPS39-202ENST00000348544 SARM1Q6SZW1 724 aa8.03□□□□□ -1.12
VPS39-202ENST00000348544 RHPN1Q8TCX5 695 aa8.03□□□□□ -1.12
VPS39-202ENST00000348544 KCNB2Q92953 911 aa8.03□□□□□ -1.12
VPS39-202ENST00000348544 GTF3C6Q969F1 213 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms