RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 GOLGA6L2Q8N9W4 650 aaPredicted RBP6.93□□□□□ -1.3
CSDE1-202ENST00000339438 PPP2R1AP30153 589 aa6.92□□□□□ -1.3
CSDE1-202ENST00000339438 IRX5P78411 483 aaPredicted RBP6.92□□□□□ -1.3
CSDE1-202ENST00000339438 CC2D1BQ5T0F9 858 aaKnown RBP6.92□□□□□ -1.3
CSDE1-202ENST00000339438 RLBP1P12271 317 aa6.92□□□□□ -1.3
CSDE1-202ENST00000339438 NCLP19338 710 aaKnown RBP6.92□□□□□ -1.3
CSDE1-202ENST00000339438 PANK1Q8TE04 598 aa6.92□□□□□ -1.3
CSDE1-202ENST00000339438 CYP2E1P05181 493 aaPredicted RBP6.92□□□□□ -1.3
CSDE1-202ENST00000339438 RXRBP28702 533 aa6.92□□□□□ -1.3
CSDE1-202ENST00000339438 PHKG2P15735 406 aa6.92□□□□□ -1.3
CSDE1-202ENST00000339438 CSPP1Q1MSJ5 1256 aa6.92□□□□□ -1.3
CSDE1-202ENST00000339438 TRIM35Q9UPQ4 493 aa6.92□□□□□ -1.3
CSDE1-202ENST00000339438 TNNQ9UQP3 1299 aa6.92□□□□□ -1.3
CSDE1-202ENST00000339438 ATP10DQ9P241 1426 aa6.91□□□□□ -1.3
CSDE1-202ENST00000339438 ZSCAN23Q3MJ62 389 aa6.91□□□□□ -1.3
CSDE1-202ENST00000339438 PLCD3Q8N3E9 789 aa6.91□□□□□ -1.3
CSDE1-202ENST00000339438 ANKRD24Q8TF21 1146 aa6.91□□□□□ -1.3
CSDE1-202ENST00000339438 ANKRD7Q92527 254 aa6.91□□□□□ -1.3
CSDE1-202ENST00000339438 IRS2Q9Y4H2 1338 aa6.91□□□□□ -1.3
CSDE1-202ENST00000339438 HMGN5P82970 282 aaKnown RBP6.91□□□□□ -1.3
CSDE1-202ENST00000339438 PDIA6Q15084 440 aa6.91□□□□□ -1.3
CSDE1-202ENST00000339438 ZNF827Q17R98 1081 aa6.91□□□□□ -1.3
CSDE1-202ENST00000339438 FTSJ3Q8IY81 847 aaKnown RBP6.91□□□□□ -1.3
CSDE1-202ENST00000339438 ABTB2Q8N961 1025 aa6.91□□□□□ -1.3
CSDE1-202ENST00000339438 PNPLA7Q6ZV29 1317 aa6.91□□□□□ -1.3
CSDE1-202ENST00000339438 TULP2O00295 520 aa6.91□□□□□ -1.3
CSDE1-202ENST00000339438 RGL2O15211 777 aa6.91□□□□□ -1.3
CSDE1-202ENST00000339438 TNNT2P45379 298 aaPredicted RBP6.91□□□□□ -1.3
CSDE1-202ENST00000339438 PRIM1P49642 420 aaKnown RBP6.91□□□□□ -1.3
CSDE1-202ENST00000339438 ANP32BQ92688 251 aaKnown RBP6.91□□□□□ -1.3
CSDE1-202ENST00000339438 LMBRD1Q9NUN5 540 aa6.91□□□□□ -1.3
CSDE1-202ENST00000339438 COG6Q9Y2V7 657 aa6.91□□□□□ -1.3
CSDE1-202ENST00000339438 CDCA7Q9BWT1 371 aaPredicted RBP6.9□□□□□ -1.3
CSDE1-202ENST00000339438 TRPM7Q96QT4 1865 aa6.9□□□□□ -1.3
CSDE1-202ENST00000339438 SSFA2P28290 1259 aa6.9□□□□□ -1.3
CSDE1-202ENST00000339438 CHRNA2Q15822 529 aa6.9□□□□□ -1.3
CSDE1-202ENST00000339438 BAG4O95429 457 aaKnown RBP6.9□□□□□ -1.31
CSDE1-202ENST00000339438 TAF3Q5VWG9 929 aa6.9□□□□□ -1.31
CSDE1-202ENST00000339438 UPF2Q9HAU5 1272 aaKnown RBP6.9□□□□□ -1.31
CSDE1-202ENST00000339438 KLRG2A4D1S0 409 aaPredicted RBP6.89□□□□□ -1.31
CSDE1-202ENST00000339438 SLFN14P0C7P3 912 aa6.89□□□□□ -1.31
CSDE1-202ENST00000339438 CAPN2P17655 700 aa6.89□□□□□ -1.31
CSDE1-202ENST00000339438 RRS1Q15050 365 aaKnown RBP6.89□□□□□ -1.31
CSDE1-202ENST00000339438 GPT2Q8TD30 523 aa6.89□□□□□ -1.31
CSDE1-202ENST00000339438 PHACTR3Q96KR7 559 aa6.89□□□□□ -1.31
CSDE1-202ENST00000339438 C8orf37Q96NL8 207 aa6.89□□□□□ -1.31
CSDE1-202ENST00000339438 GBP4Q96PP9 640 aa6.89□□□□□ -1.31
CSDE1-202ENST00000339438 SSC5DA1L4H1 1573 aa6.89□□□□□ -1.31
CSDE1-202ENST00000339438 PTMSP20962 102 aa6.89□□□□□ -1.31
CSDE1-202ENST00000339438 INTS5Q6P9B9 1019 aaKnown RBP6.89□□□□□ -1.31
CSDE1-202ENST00000339438 BCL2L12Q9HB09 334 aa6.89□□□□□ -1.31
CSDE1-202ENST00000339438 CEP350Q5VT06 3117 aa6.89□□□□□ -1.31
CSDE1-202ENST00000339438 MYH7P12883 1935 aa6.88□□□□□ -1.31
CSDE1-202ENST00000339438 KCNQ2O43526 872 aa6.88□□□□□ -1.31
CSDE1-202ENST00000339438 KCNA3P22001 575 aa6.88□□□□□ -1.31
CSDE1-202ENST00000339438 AEBP1Q8IUX7 1158 aa6.88□□□□□ -1.31
CSDE1-202ENST00000339438 PRIMPOLQ96LW4 560 aa6.88□□□□□ -1.31
CSDE1-202ENST00000339438 PDGFDQ9GZP0 370 aaPredicted RBP6.88□□□□□ -1.31
CSDE1-202ENST00000339438 GGNBP2Q9H3C7 697 aa6.88□□□□□ -1.31
CSDE1-202ENST00000339438 CTIFO43310 598 aaKnown RBP6.88□□□□□ -1.31
CSDE1-202ENST00000339438 SPTLC3Q9NUV7 552 aa6.88□□□□□ -1.31
CSDE1-202ENST00000339438 TERF2IPQ9NYB0 399 aa6.88□□□□□ -1.31
CSDE1-202ENST00000339438 MFAP1P55081 439 aaKnown RBP6.88□□□□□ -1.31
CSDE1-202ENST00000339438 SRPK2P78362 688 aaKnown RBP6.88□□□□□ -1.31
CSDE1-202ENST00000339438 IL17REQ8NFR9 667 aa6.88□□□□□ -1.31
CSDE1-202ENST00000339438 GAS2L2Q8NHY3 880 aa6.88□□□□□ -1.31
CSDE1-202ENST00000339438 ZFP91Q96JP5 570 aaPredicted RBP6.88□□□□□ -1.31
CSDE1-202ENST00000339438 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP6.88□□□□□ -1.312e-8■■□□□ 11.7
CSDE1-202ENST00000339438 CNTNAP4Q9C0A0 1308 aa6.88□□□□□ -1.31
CSDE1-202ENST00000339438 PTPRFP10586 1907 aa6.88□□□□□ -1.31
CSDE1-202ENST00000339438 FAM177BA6PVY3 158 aa6.87□□□□□ -1.31
CSDE1-202ENST00000339438 IGSF3O75054 1194 aa6.87□□□□□ -1.31
CSDE1-202ENST00000339438 TEX2Q8IWB9 1127 aa6.87□□□□□ -1.31
CSDE1-202ENST00000339438 HSCBQ8IWL3 235 aa6.87□□□□□ -1.31
CSDE1-202ENST00000339438 ATG3Q9NT62 314 aa6.87□□□□□ -1.31
CSDE1-202ENST00000339438 RGS22Q8NE09 1264 aa6.87□□□□□ -1.31
CSDE1-202ENST00000339438 SPDYE4A6NLX3 237 aa6.87□□□□□ -1.31
CSDE1-202ENST00000339438 E9PSI1 815 aa6.87□□□□□ -1.31
CSDE1-202ENST00000339438 ITPK1Q13572 414 aa6.87□□□□□ -1.31
CSDE1-202ENST00000339438 KRT27Q7Z3Y8 459 aa6.87□□□□□ -1.31
CSDE1-202ENST00000339438 FAM53CQ9NYF3 392 aa6.87□□□□□ -1.31
CSDE1-202ENST00000339438 CGNQ9P2M7 1197 aaKnown RBP6.87□□□□□ -1.31
CSDE1-202ENST00000339438 NSFL1CQ9UNZ2 370 aaKnown RBP6.87□□□□□ -1.31
CSDE1-202ENST00000339438 COL15A1P39059 1388 aa6.87□□□□□ -1.31
CSDE1-202ENST00000339438 RARSP54136 660 aaKnown RBP6.86□□□□□ -1.31
CSDE1-202ENST00000339438 FKBP5Q13451 457 aaPredicted RBP6.86□□□□□ -1.31
CSDE1-202ENST00000339438 CCDC27Q2M243 656 aa6.86□□□□□ -1.31
CSDE1-202ENST00000339438 PIBF1Q8WXW3 757 aa6.86□□□□□ -1.31
CSDE1-202ENST00000339438 U2AF2P26368 475 aaKnown RBP eCLIP6.86□□□□□ -1.312e-12■■■■□ 24.2
CSDE1-202ENST00000339438 TMEM63CQ9P1W3 806 aa6.86□□□□□ -1.31
CSDE1-202ENST00000339438 A0A0G2JMZ2 1700 aa6.86□□□□□ -1.31
CSDE1-202ENST00000339438 CCDC39Q9UFE4 941 aa6.86□□□□□ -1.31
CSDE1-202ENST00000339438 ZDHHC9Q9Y397 364 aa6.86□□□□□ -1.31
CSDE1-202ENST00000339438 LAMA4Q16363 1823 aa6.86□□□□□ -1.31
CSDE1-202ENST00000339438 PKP1Q13835 747 aa6.85□□□□□ -1.31
CSDE1-202ENST00000339438 PIGBQ92521 554 aa6.85□□□□□ -1.31
CSDE1-202ENST00000339438 NLRP6P59044 892 aa6.85□□□□□ -1.31
CSDE1-202ENST00000339438 LRSAM1Q6UWE0 723 aa6.85□□□□□ -1.31
CSDE1-202ENST00000339438 DDX49Q9Y6V7 483 aaKnown RBP6.85□□□□□ -1.31
CSDE1-202ENST00000339438 CAVIN1Q6NZI2 390 aaKnown RBP6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 75.3 ms