RNA–Protein interactions for RNA: ENST00000338850.5

RTN3-201, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 493 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-201ENST00000338850 PXDNLA1KZ92 1463 aa13.38□□□□□ -0.27
RTN3-201ENST00000338850 DDX11L8A8MPP1 907 aa13.38□□□□□ -0.27
RTN3-201ENST00000338850 ERVV-2B6SEH9 535 aa13.38□□□□□ -0.27
RTN3-201ENST00000338850 PHF14O94880 888 aa13.38□□□□□ -0.27
RTN3-201ENST00000338850 HSP90AB1P08238 724 aaKnown RBP13.38□□□□□ -0.27
RTN3-201ENST00000338850 SSFA2P28290 1259 aa13.38□□□□□ -0.27
RTN3-201ENST00000338850 AMOTQ4VCS5 1084 aa13.38□□□□□ -0.27
RTN3-201ENST00000338850 UBR3Q6ZT12 1888 aa13.38□□□□□ -0.27
RTN3-201ENST00000338850 CHL1O00533 1208 aa13.37□□□□□ -0.27
RTN3-201ENST00000338850 ATP6V1AP38606 617 aa13.37□□□□□ -0.27
RTN3-201ENST00000338850 RPAP2Q8IXW5 612 aaPredicted RBP13.37□□□□□ -0.27
RTN3-201ENST00000338850 IL27Q8NEV9 243 aa13.37□□□□□ -0.27
RTN3-201ENST00000338850 GNPATO15228 680 aa13.36□□□□□ -0.27
RTN3-201ENST00000338850 MCM4P33991 863 aa13.36□□□□□ -0.27
RTN3-201ENST00000338850 MFAP1P55081 439 aaKnown RBP13.36□□□□□ -0.27
RTN3-201ENST00000338850 SULT6B1Q6IMI4 303 aa13.36□□□□□ -0.27
RTN3-201ENST00000338850 SLC4A9Q96Q91 983 aa13.36□□□□□ -0.27
RTN3-201ENST00000338850 DCTPP1Q9H773 170 aa13.36□□□□□ -0.27
RTN3-201ENST00000338850 CD2APQ9Y5K6 639 aa13.36□□□□□ -0.27
RTN3-201ENST00000338850 CHD4Q14839 1912 aa13.35□□□□□ -0.27
RTN3-201ENST00000338850 HTATSF1O43719 755 aaKnown RBP13.35□□□□□ -0.27
RTN3-201ENST00000338850 CDC45O75419 566 aa13.35□□□□□ -0.27
RTN3-201ENST00000338850 YBX3P16989 372 aaKnown RBP eCLIP13.35□□□□□ -0.27
RTN3-201ENST00000338850 CLEC17AQ6ZS10 378 aa13.35□□□□□ -0.27
RTN3-201ENST00000338850 FSD2A1L4K1 749 aa13.34□□□□□ -0.27
RTN3-201ENST00000338850 HMOX1P09601 288 aa13.34□□□□□ -0.27
RTN3-201ENST00000338850 CABP4P57796 275 aa13.34□□□□□ -0.27
RTN3-201ENST00000338850 C1orf141Q5JVX7 400 aa13.34□□□□□ -0.27
RTN3-201ENST00000338850 FAM43AQ8N2R8 423 aa13.34□□□□□ -0.27
RTN3-201ENST00000338850 TSPYL6Q8N831 410 aa13.34□□□□□ -0.27
RTN3-201ENST00000338850 ANKRD44Q8N8A2 993 aa13.34□□□□□ -0.27
RTN3-201ENST00000338850 RBM42Q9BTD8 480 aaKnown RBP13.34□□□□□ -0.27
RTN3-201ENST00000338850 SLKQ9H2G2 1235 aaPredicted RBP13.34□□□□□ -0.27
RTN3-201ENST00000338850 BABAM1Q9NWV8 329 aa13.34□□□□□ -0.27
RTN3-201ENST00000338850 SIRT2Q8IXJ6 389 aa13.33□□□□□ -0.28
RTN3-201ENST00000338850 LNPKQ9C0E8 428 aa13.33□□□□□ -0.28
RTN3-201ENST00000338850 ZNF831Q5JPB2 1677 aa13.33□□□□□ -0.28
RTN3-201ENST00000338850 UTRNP46939 3433 aa13.33□□□□□ -0.28
RTN3-201ENST00000338850 GRIN3BO60391 1043 aa13.32□□□□□ -0.28
RTN3-201ENST00000338850 RC3H1Q5TC82 1133 aaKnown RBP13.32□□□□□ -0.28
RTN3-201ENST00000338850 C8orf58Q8NAV2 365 aa13.32□□□□□ -0.28
RTN3-201ENST00000338850 CNTNAP4Q9C0A0 1308 aa13.32□□□□□ -0.28
RTN3-201ENST00000338850 NFATC2IPQ8NCF5 419 aa13.31□□□□□ -0.28
RTN3-201ENST00000338850 KIF2CQ99661 725 aa13.31□□□□□ -0.28
RTN3-201ENST00000338850 RTCBQ9Y3I0 505 aaKnown RBP13.31□□□□□ -0.28
RTN3-201ENST00000338850 IBTKQ9P2D0 1353 aaPredicted RBP13.31□□□□□ -0.28
RTN3-201ENST00000338850 PTCD1O75127 700 aaKnown RBP13.3□□□□□ -0.28
RTN3-201ENST00000338850 RAB3GAP1Q15042 981 aa13.3□□□□□ -0.28
RTN3-201ENST00000338850 SKOR2Q2VWA4 1001 aaPredicted RBP13.3□□□□□ -0.28
RTN3-201ENST00000338850 AKAP4Q5JQC9 854 aa13.3□□□□□ -0.28
RTN3-201ENST00000338850 TRAPPC3LQ5T215 181 aa13.3□□□□□ -0.28
RTN3-201ENST00000338850 ANKRD45Q5TZF3 282 aa13.3□□□□□ -0.28
RTN3-201ENST00000338850 TBC1D9Q6ZT07 1266 aa13.3□□□□□ -0.28
RTN3-201ENST00000338850 COL5A3P25940 1745 aaPredicted RBP13.3□□□□□ -0.28
RTN3-201ENST00000338850 RPS6KA4O75676 772 aa13.29□□□□□ -0.28
RTN3-201ENST00000338850 MMP10P09238 476 aa13.29□□□□□ -0.28
RTN3-201ENST00000338850 ADRA2BP18089 450 aa13.29□□□□□ -0.28
RTN3-201ENST00000338850 RABEP1Q15276 862 aa13.29□□□□□ -0.28
RTN3-201ENST00000338850 TTC22Q5TAA0 569 aa13.29□□□□□ -0.28
RTN3-201ENST00000338850 GAS2L2Q8NHY3 880 aa13.29□□□□□ -0.28
RTN3-201ENST00000338850 ARHGEF1Q92888 912 aaKnown RBP13.29□□□□□ -0.28
RTN3-201ENST00000338850 GBP4Q96PP9 640 aa13.29□□□□□ -0.28
RTN3-201ENST00000338850 THUMPD2Q9BTF0 503 aaKnown RBP13.29□□□□□ -0.28
RTN3-201ENST00000338850 OSBPL3Q9H4L5 887 aa13.29□□□□□ -0.28
RTN3-201ENST00000338850 KDM3BQ7LBC6 1761 aa13.29□□□□□ -0.28
RTN3-201ENST00000338850 K7ELQ4 463 aaPredicted RBP13.28□□□□□ -0.28
RTN3-201ENST00000338850 EPB41L2O43491 1005 aaKnown RBP13.28□□□□□ -0.28
RTN3-201ENST00000338850 HMMRO75330 724 aa13.28□□□□□ -0.28
RTN3-201ENST00000338850 PLEKHM2Q8IWE5 1019 aa13.28□□□□□ -0.28
RTN3-201ENST00000338850 GYS1P13807 737 aa13.27□□□□□ -0.29
RTN3-201ENST00000338850 CCT4P50991 539 aaKnown RBP13.27□□□□□ -0.29
RTN3-201ENST00000338850 CEP85Q6P2H3 762 aa13.27□□□□□ -0.29
RTN3-201ENST00000338850 NLGN1Q8N2Q7 840 aa13.27□□□□□ -0.29
RTN3-201ENST00000338850 SLC52A2Q9HAB3 445 aa13.27□□□□□ -0.29
RTN3-201ENST00000338850 LGR6Q9HBX8 967 aa13.27□□□□□ -0.29
RTN3-201ENST00000338850 BRPF3Q9ULD4 1205 aa13.27□□□□□ -0.29
RTN3-201ENST00000338850 MRC1P22897 1456 aa13.27□□□□□ -0.29
RTN3-201ENST00000338850 SCN11AQ9UI33 1791 aa13.27□□□□□ -0.29
RTN3-201ENST00000338850 RNMTO43148 476 aaKnown RBP13.26□□□□□ -0.29
RTN3-201ENST00000338850 CRKLP46109 303 aaKnown RBP13.26□□□□□ -0.29
RTN3-201ENST00000338850 MTHFSDQ2M296 383 aaKnown RBP13.26□□□□□ -0.29
RTN3-201ENST00000338850 IL17RAQ96F46 866 aa13.26□□□□□ -0.29
RTN3-201ENST00000338850 CICQ96RK0 1608 aaPredicted RBP13.26□□□□□ -0.29
RTN3-201ENST00000338850 MYH14Q7Z406 1995 aaKnown RBP13.25□□□□□ -0.29
RTN3-201ENST00000338850 TJP1Q07157 1748 aa13.25□□□□□ -0.29
RTN3-201ENST00000338850 GOLGB1Q14789 3259 aaKnown RBP13.25□□□□□ -0.29
RTN3-201ENST00000338850 C10orf71Q711Q0 1435 aa13.25□□□□□ -0.29
RTN3-201ENST00000338850 GOLGA6L3A6NEY3 463 aa13.25□□□□□ -0.29
RTN3-201ENST00000338850 TRAK2O60296 914 aa13.25□□□□□ -0.29
RTN3-201ENST00000338850 GSPT1P15170 499 aaKnown RBP13.25□□□□□ -0.29
RTN3-201ENST00000338850 RFC4P35249 363 aa13.25□□□□□ -0.29
RTN3-201ENST00000338850 MRE11P49959 708 aa13.25□□□□□ -0.29
RTN3-201ENST00000338850 CASC1Q6TDU7 716 aa13.25□□□□□ -0.29
RTN3-201ENST00000338850 WWC3Q9ULE0 1092 aa13.25□□□□□ -0.29
RTN3-201ENST00000338850 AOX1Q06278 1338 aa13.24□□□□□ -0.29
RTN3-201ENST00000338850 C1QTNF8P60827 252 aa13.24□□□□□ -0.29
RTN3-201ENST00000338850 INTS5Q6P9B9 1019 aaKnown RBP13.24□□□□□ -0.29
RTN3-201ENST00000338850 CHMP4AQ9BY43 222 aa13.24□□□□□ -0.29
RTN3-201ENST00000338850 ADAMTS7Q9UKP4 1686 aa13.24□□□□□ -0.29
RTN3-201ENST00000338850 ADCY9O60503 1353 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms