RNA–Protein interactions for RNA: ENST00000337526.10

RTN4-202, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,790 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-202ENST00000337526 NECAB1Q8N987 351 aa15.98■□□□□ 0.15
RTN4-202ENST00000337526 SLC12A7Q9Y666 1083 aa15.98■□□□□ 0.15
RTN4-202ENST00000337526 KIF5CO60282 957 aa15.98■□□□□ 0.15
RTN4-202ENST00000337526 GBP3Q9H0R5 595 aa15.98■□□□□ 0.15
RTN4-202ENST00000337526 USP16Q9Y5T5 823 aa15.98■□□□□ 0.15
RTN4-202ENST00000337526 PPFIA3O75145 1194 aa15.98■□□□□ 0.15
RTN4-202ENST00000337526 STX1AQ16623 288 aa15.98■□□□□ 0.15
RTN4-202ENST00000337526 ZBTB40Q9NUA8 1239 aa15.98■□□□□ 0.15
RTN4-202ENST00000337526 HMG20BQ9P0W2 317 aa15.98■□□□□ 0.15
RTN4-202ENST00000337526 IFIT3O14879 490 aaKnown RBP15.97■□□□□ 0.15
RTN4-202ENST00000337526 CCDC148Q8NFR7 591 aa15.97■□□□□ 0.15
RTN4-202ENST00000337526 ORC3Q9UBD5 711 aaPredicted RBP15.97■□□□□ 0.15
RTN4-202ENST00000337526 UGGT2Q9NYU1 1516 aa15.97■□□□□ 0.15
RTN4-202ENST00000337526 CRACR2AQ9BSW2 395 aa15.97■□□□□ 0.15
RTN4-202ENST00000337526 SNRKQ9NRH2 765 aa15.97■□□□□ 0.15
RTN4-202ENST00000337526 VAMP4O75379 141 aa15.96■□□□□ 0.15
RTN4-202ENST00000337526 TCEANC2Q96MN5 208 aa15.96■□□□□ 0.15
RTN4-202ENST00000337526 ASXL2Q76L83 1435 aa15.96■□□□□ 0.15
RTN4-202ENST00000337526 ATP5J2-PTCD1G3V325 749 aa15.96■□□□□ 0.15
RTN4-202ENST00000337526 POLR3DP05423 398 aaPredicted RBP15.96■□□□□ 0.15
RTN4-202ENST00000337526 CTCFLQ8NI51 663 aaPredicted RBP15.96■□□□□ 0.15
RTN4-202ENST00000337526 DCTPP1Q9H773 170 aa15.96■□□□□ 0.15
RTN4-202ENST00000337526 DYNC1I1O14576 645 aa15.96■□□□□ 0.15
RTN4-202ENST00000337526 BRF1Q92994 677 aa15.96■□□□□ 0.15
RTN4-202ENST00000337526 TMOD3Q9NYL9 352 aa15.96■□□□□ 0.15
RTN4-202ENST00000337526 BICDL1Q6ZP65 573 aa15.96■□□□□ 0.14
RTN4-202ENST00000337526 TMC6Q7Z403 805 aa15.96■□□□□ 0.14
RTN4-202ENST00000337526 USP48Q86UV5 1035 aa15.96■□□□□ 0.14
RTN4-202ENST00000337526 IQCA1Q86XH1 822 aa15.96■□□□□ 0.14
RTN4-202ENST00000337526 ZNF397Q8NF99 534 aaPredicted RBP15.96■□□□□ 0.14
RTN4-202ENST00000337526 ZBTB3Q9H5J0 574 aa15.96■□□□□ 0.14
RTN4-202ENST00000337526 CGNQ9P2M7 1197 aaKnown RBP15.96■□□□□ 0.14
RTN4-202ENST00000337526 NUP160Q12769 1436 aa15.96■□□□□ 0.14
RTN4-202ENST00000337526 ADAMTS12P58397 1594 aa15.95■□□□□ 0.14
RTN4-202ENST00000337526 CPLX3Q8WVH0 158 aa15.95■□□□□ 0.14
RTN4-202ENST00000337526 PRIMPOLQ96LW4 560 aa15.95■□□□□ 0.14
RTN4-202ENST00000337526 CARD14Q9BXL6 1004 aa15.95■□□□□ 0.14
RTN4-202ENST00000337526 GOLGA8AA7E2F4 631 aa15.95■□□□□ 0.14
RTN4-202ENST00000337526 ZSCAN16Q9H4T2 348 aaPredicted RBP15.95■□□□□ 0.14
RTN4-202ENST00000337526 CNPY2Q9Y2B0 182 aa15.95■□□□□ 0.14
RTN4-202ENST00000337526 HAND2P61296 217 aa15.95■□□□□ 0.14
RTN4-202ENST00000337526 ATP8B2P98198 1209 aa15.95■□□□□ 0.14
RTN4-202ENST00000337526 RAB3GAP1Q15042 981 aa15.95■□□□□ 0.14
RTN4-202ENST00000337526 TSPYL6Q8N831 410 aa15.95■□□□□ 0.14
RTN4-202ENST00000337526 ZNF830Q96NB3 372 aaPredicted RBP15.95■□□□□ 0.14
RTN4-202ENST00000337526 POLKQ9UBT6 870 aa15.95■□□□□ 0.14
RTN4-202ENST00000337526 RANBP6O60518 1105 aaKnown RBP15.95■□□□□ 0.14
RTN4-202ENST00000337526 IARSP41252 1262 aaKnown RBP15.95■□□□□ 0.14
RTN4-202ENST00000337526 USP5P45974 858 aa15.95■□□□□ 0.14
RTN4-202ENST00000337526 CASQ1P31415 396 aa15.94■□□□□ 0.14
RTN4-202ENST00000337526 PRIM1P49642 420 aaKnown RBP15.94■□□□□ 0.14
RTN4-202ENST00000337526 TRMT112Q9UI30 125 aaKnown RBP15.94■□□□□ 0.14
RTN4-202ENST00000337526 SPA17Q15506 151 aa15.94■□□□□ 0.14
RTN4-202ENST00000337526 CAVIN4Q5BKX8 364 aa15.94■□□□□ 0.14
RTN4-202ENST00000337526 TAF4BQ92750 862 aa15.94■□□□□ 0.14
RTN4-202ENST00000337526 PHAXQ9H814 394 aaKnown RBP15.94■□□□□ 0.14
RTN4-202ENST00000337526 FANCAO15360 1455 aa15.94■□□□□ 0.14
RTN4-202ENST00000337526 TEX14Q8IWB6 1497 aa15.94■□□□□ 0.14
RTN4-202ENST00000337526 SSRP1Q08945 709 aaKnown RBP15.93■□□□□ 0.14
RTN4-202ENST00000337526 JAKMIP3Q5VZ66 844 aa15.93■□□□□ 0.14
RTN4-202ENST00000337526 LDHAL6AQ6ZMR3 332 aa15.93■□□□□ 0.14
RTN4-202ENST00000337526 RNF41Q9H4P4 317 aaPredicted RBP15.93■□□□□ 0.14
RTN4-202ENST00000337526 DENND4BO75064 1496 aaPredicted RBP15.93■□□□□ 0.14
RTN4-202ENST00000337526 MKNK2Q9HBH9 465 aa15.93■□□□□ 0.14
RTN4-202ENST00000337526 RBM8AQ9Y5S9 174 aaKnown RBP15.93■□□□□ 0.14
RTN4-202ENST00000337526 NEFHP12036 1026 aa15.93■□□□□ 0.14
RTN4-202ENST00000337526 NOLC1Q14978 699 aaKnown RBP eCLIP15.93■□□□□ 0.148e-8■□□□□ 10
RTN4-202ENST00000337526 DDX46Q7L014 1031 aaKnown RBP15.93■□□□□ 0.14
RTN4-202ENST00000337526 ISM2Q6H9L7 571 aa15.92■□□□□ 0.14
RTN4-202ENST00000337526 MICU3Q86XE3 530 aa15.92■□□□□ 0.14
RTN4-202ENST00000337526 FAM200AQ8TCP9 573 aa15.92■□□□□ 0.14
RTN4-202ENST00000337526 ZKSCAN5Q9Y2L8 839 aa15.92■□□□□ 0.14
RTN4-202ENST00000337526 PPP4R3BQ5MIZ7 849 aa15.92■□□□□ 0.14
RTN4-202ENST00000337526 SEPT11Q9NVA2 429 aaKnown RBP15.92■□□□□ 0.14
RTN4-202ENST00000337526 ANKRD18BA2A2Z9 1011 aa15.92■□□□□ 0.14
RTN4-202ENST00000337526 ANKRD13DQ6ZTN6 518 aa15.92■□□□□ 0.14
RTN4-202ENST00000337526 ZSCAN29Q8IWY8 852 aaPredicted RBP15.92■□□□□ 0.14
RTN4-202ENST00000337526 JARID2Q92833 1246 aaPredicted RBP15.92■□□□□ 0.14
RTN4-202ENST00000337526 DNAJC5Q9H3Z4 198 aa15.92■□□□□ 0.14
RTN4-202ENST00000337526 CHPF2Q9P2E5 772 aa15.92■□□□□ 0.14
RTN4-202ENST00000337526 SNW1Q13573 536 aaKnown RBP15.92■□□□□ 0.14
RTN4-202ENST00000337526 ZNF287Q9HBT7 754 aa15.92■□□□□ 0.14
RTN4-202ENST00000337526 PIK3C2GO75747 1445 aa15.92■□□□□ 0.14
RTN4-202ENST00000337526 NUTM2BA6NNL0 878 aaPredicted RBP15.91■□□□□ 0.14
RTN4-202ENST00000337526 NUTM2EB1AL46 878 aaPredicted RBP15.91■□□□□ 0.14
RTN4-202ENST00000337526 CCDC102BQ68D86 513 aa15.91■□□□□ 0.14
RTN4-202ENST00000337526 NUTM2AQ8IVF1 878 aaPredicted RBP15.91■□□□□ 0.14
RTN4-202ENST00000337526 DACT1Q9NYF0 836 aa15.91■□□□□ 0.14
RTN4-202ENST00000337526 TMEM132AQ24JP5 1023 aa15.91■□□□□ 0.14
RTN4-202ENST00000337526 HSP90AB3PQ58FF7 597 aa15.91■□□□□ 0.14
RTN4-202ENST00000337526 FKBP15Q5T1M5 1219 aa15.91■□□□□ 0.14
RTN4-202ENST00000337526 CCDC186Q7Z3E2 898 aa15.91■□□□□ 0.14
RTN4-202ENST00000337526 TAX1BP1Q86VP1 789 aa15.91■□□□□ 0.14
RTN4-202ENST00000337526 PLEKHM2Q8IWE5 1019 aa15.91■□□□□ 0.14
RTN4-202ENST00000337526 KDM5BQ9UGL1 1544 aa15.91■□□□□ 0.14
RTN4-202ENST00000337526 DNM1Q05193 864 aaKnown RBP15.91■□□□□ 0.14
RTN4-202ENST00000337526 CEP85Q6P2H3 762 aa15.91■□□□□ 0.14
RTN4-202ENST00000337526 RAB11FIP4Q86YS3 637 aa15.91■□□□□ 0.14
RTN4-202ENST00000337526 IFNL2Q8IZJ0 200 aa15.91■□□□□ 0.14
RTN4-202ENST00000337526 ZGPATQ8N5A5 531 aaKnown RBP15.91■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 112.1 ms