RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 IGSF1Q8N6C5 1336 aa2.54□□□□□ -2
LINC00643-201ENST00000334389 WASLO00401 505 aaPredicted RBP2.53□□□□□ -2
LINC00643-201ENST00000334389 YBX3P16989 372 aaKnown RBP eCLIP2.53□□□□□ -2
LINC00643-201ENST00000334389 LSM11P83369 360 aaKnown RBP eCLIP2.53□□□□□ -2
LINC00643-201ENST00000334389 C3orf67Q6ZVT6 689 aa2.53□□□□□ -2
LINC00643-201ENST00000334389 MAF1Q9H063 256 aa2.53□□□□□ -2
LINC00643-201ENST00000334389 GPBP1L1Q9HC44 474 aaPredicted RBP2.53□□□□□ -2
LINC00643-201ENST00000334389 FAM181BA6NEQ2 426 aa2.53□□□□□ -2
LINC00643-201ENST00000334389 FXR1P51114 621 aaKnown RBP eCLIP2.53□□□□□ -2
LINC00643-201ENST00000334389 FKBP1AP62942 108 aaKnown RBP2.53□□□□□ -2
LINC00643-201ENST00000334389 AKNAD1Q5T1N1 836 aa2.53□□□□□ -2
LINC00643-201ENST00000334389 GGT6Q6P531 493 aa2.53□□□□□ -2
LINC00643-201ENST00000334389 AIDAQ96BJ3 306 aa2.53□□□□□ -2
LINC00643-201ENST00000334389 PARP14Q460N5 1801 aa2.53□□□□□ -2
LINC00643-201ENST00000334389 PTPRFP10586 1907 aa2.53□□□□□ -2
LINC00643-201ENST00000334389 TM4SF4P48230 202 aa2.53□□□□□ -2.01
LINC00643-201ENST00000334389 R3HDM1Q15032 1099 aaKnown RBP2.53□□□□□ -2.01
LINC00643-201ENST00000334389 ZNF787Q6DD87 383 aa2.53□□□□□ -2.01
LINC00643-201ENST00000334389 P2RX7Q99572 595 aaKnown RBP2.53□□□□□ -2.01
LINC00643-201ENST00000334389 SLC45A1Q9Y2W3 748 aa2.53□□□□□ -2.01
LINC00643-201ENST00000334389 PPP2R3BQ9Y5P8 575 aa2.53□□□□□ -2.01
LINC00643-201ENST00000334389 PAPLNO95428 1278 aa2.52□□□□□ -2.01
LINC00643-201ENST00000334389 ITGBL1O95965 494 aaPredicted RBP2.52□□□□□ -2.01
LINC00643-201ENST00000334389 KCNA3P22001 575 aa2.52□□□□□ -2.01
LINC00643-201ENST00000334389 C1orf53Q5VUE5 145 aa2.52□□□□□ -2.01
LINC00643-201ENST00000334389 MYO16Q9Y6X6 1858 aa2.52□□□□□ -2.01
LINC00643-201ENST00000334389 MROH7-TTC4A0A0A0MT08 1334 aa2.52□□□□□ -2.01
LINC00643-201ENST00000334389 MROH7Q68CQ1 1323 aa2.52□□□□□ -2.01
LINC00643-201ENST00000334389 TMEM88BA6NKF7 163 aa2.52□□□□□ -2.01
LINC00643-201ENST00000334389 INHBEP58166 350 aa2.52□□□□□ -2.01
LINC00643-201ENST00000334389 NKX3-2P78367 333 aa2.52□□□□□ -2.01
LINC00643-201ENST00000334389 COL15A1P39059 1388 aa2.51□□□□□ -2.01
LINC00643-201ENST00000334389 ALDH1A1P00352 501 aa2.51□□□□□ -2.01
LINC00643-201ENST00000334389 LMNB1P20700 586 aa2.51□□□□□ -2.01
LINC00643-201ENST00000334389 TM4SF1P30408 202 aa2.51□□□□□ -2.01
LINC00643-201ENST00000334389 MKRN4PQ13434 485 aaPredicted RBP2.51□□□□□ -2.01
LINC00643-201ENST00000334389 MLECQ14165 292 aa2.51□□□□□ -2.01
LINC00643-201ENST00000334389 LCE2AQ5TA79 106 aaPredicted RBP2.51□□□□□ -2.01
LINC00643-201ENST00000334389 NLRP13Q86W25 1043 aa2.51□□□□□ -2.01
LINC00643-201ENST00000334389 LOXHD1Q8IVV2 1947 aa2.51□□□□□ -2.01
LINC00643-201ENST00000334389 RTL9Q8NET4 1388 aa2.51□□□□□ -2.01
LINC00643-201ENST00000334389 PCDH11XQ9BZA7 1347 aa2.51□□□□□ -2.01
LINC00643-201ENST00000334389 PCDH11YQ9BZA8 1340 aa2.51□□□□□ -2.01
LINC00643-201ENST00000334389 PRR33A8MZF0 331 aa2.51□□□□□ -2.01
LINC00643-201ENST00000334389 APBA3O96018 575 aa2.51□□□□□ -2.01
LINC00643-201ENST00000334389 VEGFAP15692 232 aaPredicted RBP2.51□□□□□ -2.01
LINC00643-201ENST00000334389 EN1Q05925 392 aaPredicted RBP2.51□□□□□ -2.01
LINC00643-201ENST00000334389 COL19A1Q14993 1142 aa2.51□□□□□ -2.01
LINC00643-201ENST00000334389 COL13A1Q5TAT6 717 aaPredicted RBP2.51□□□□□ -2.01
LINC00643-201ENST00000334389 FBXO46Q6PJ61 603 aaPredicted RBP2.51□□□□□ -2.01
LINC00643-201ENST00000334389 CTU1Q7Z7A3 348 aaKnown RBP2.51□□□□□ -2.01
LINC00643-201ENST00000334389 NLGN1Q8N2Q7 840 aa2.51□□□□□ -2.01
LINC00643-201ENST00000334389 CCDC87Q9NVE4 849 aa2.51□□□□□ -2.01
LINC00643-201ENST00000334389 SIP14410 1827 aa2.51□□□□□ -2.01
LINC00643-201ENST00000334389 ABCC12Q96J65 1359 aa2.51□□□□□ -2.01
LINC00643-201ENST00000334389 POTECB2RU33 542 aa2.51□□□□□ -2.01
LINC00643-201ENST00000334389 ERVV-2B6SEH9 535 aa2.51□□□□□ -2.01
LINC00643-201ENST00000334389 FZD9O00144 591 aa2.51□□□□□ -2.01
LINC00643-201ENST00000334389 NKX2-3Q8TAU0 364 aa2.51□□□□□ -2.01
LINC00643-201ENST00000334389 ZNF775Q96BV0 537 aaPredicted RBP2.51□□□□□ -2.01
LINC00643-201ENST00000334389 TBC1D2Q9BYX2 928 aa2.51□□□□□ -2.01
LINC00643-201ENST00000334389 PATJQ8NI35 1801 aa2.51□□□□□ -2.01
LINC00643-201ENST00000334389 PKD1L2Q7Z442 2459 aa2.51□□□□□ -2.01
LINC00643-201ENST00000334389 RPS12P25398 132 aaKnown RBP2.5□□□□□ -2.01
LINC00643-201ENST00000334389 BMP8AQ7Z5Y6 402 aa2.5□□□□□ -2.01
LINC00643-201ENST00000334389 USP47Q96K76 1375 aa2.5□□□□□ -2.01
LINC00643-201ENST00000334389 SALL1Q9NSC2 1324 aa2.5□□□□□ -2.01
LINC00643-201ENST00000334389 A0A087WZG4 1122 aa2.5□□□□□ -2.01
LINC00643-201ENST00000334389 DHX30Q7L2E3 1194 aaKnown RBP eCLIP2.5□□□□□ -2.01
LINC00643-201ENST00000334389 MARCH10Q8NA82 808 aaPredicted RBP2.5□□□□□ -2.01
LINC00643-201ENST00000334389 CCDC102AQ96A19 550 aa2.5□□□□□ -2.01
LINC00643-201ENST00000334389 PPP1R1BQ9UD71 204 aaPredicted RBP2.5□□□□□ -2.01
LINC00643-201ENST00000334389 FLT4P35916 1363 aa2.5□□□□□ -2.01
LINC00643-201ENST00000334389 BTBD11A6QL63 1104 aa2.49□□□□□ -2.01
LINC00643-201ENST00000334389 GPR37L1O60883 481 aa2.49□□□□□ -2.01
LINC00643-201ENST00000334389 CAP1Q01518 475 aa2.49□□□□□ -2.01
LINC00643-201ENST00000334389 LSM14AQ8ND56 463 aaKnown RBP2.49□□□□□ -2.01
LINC00643-201ENST00000334389 C1QTNF1Q9BXJ1 281 aa2.49□□□□□ -2.01
LINC00643-201ENST00000334389 TNKSO95271 1327 aa2.49□□□□□ -2.01
LINC00643-201ENST00000334389 ADGRA2Q96PE1 1338 aa2.49□□□□□ -2.01
LINC00643-201ENST00000334389 ATAD5Q96QE3 1844 aa2.49□□□□□ -2.01
LINC00643-201ENST00000334389 FAM155AB1AL88 458 aaPredicted RBP2.49□□□□□ -2.01
LINC00643-201ENST00000334389 FOXN1O15353 648 aa2.49□□□□□ -2.01
LINC00643-201ENST00000334389 ARHGEF6Q15052 776 aa2.49□□□□□ -2.01
LINC00643-201ENST00000334389 PUS10Q3MIT2 529 aaKnown RBP2.49□□□□□ -2.01
LINC00643-201ENST00000334389 TRMT44Q8IYL2 757 aaKnown RBP2.49□□□□□ -2.01
LINC00643-201ENST00000334389 C7orf43Q8WVR3 580 aa2.49□□□□□ -2.01
LINC00643-201ENST00000334389 FANCMQ8IYD8 2048 aa2.49□□□□□ -2.01
LINC00643-201ENST00000334389 PLEKHH1Q9ULM0 1364 aa2.49□□□□□ -2.01
LINC00643-201ENST00000334389 SOS1Q07889 1333 aaPredicted RBP2.49□□□□□ -2.01
LINC00643-201ENST00000334389 WDR33Q9C0J8 1336 aaKnown RBP2.49□□□□□ -2.01
LINC00643-201ENST00000334389 IGHA2P01877 340 aa2.49□□□□□ -2.01
LINC00643-201ENST00000334389 SLC10A3P09131 477 aa2.49□□□□□ -2.01
LINC00643-201ENST00000334389 ZNF827Q17R98 1081 aa2.49□□□□□ -2.01
LINC00643-201ENST00000334389 DEFB132Q7Z7B7 95 aa2.49□□□□□ -2.01
LINC00643-201ENST00000334389 ZNF710Q8N1W2 664 aa2.49□□□□□ -2.01
LINC00643-201ENST00000334389 KRTAP17-1Q9BYP8 105 aa2.49□□□□□ -2.01
LINC00643-201ENST00000334389 LMCD1Q9NZU5 365 aa2.49□□□□□ -2.01
LINC00643-201ENST00000334389 KAT6BQ8WYB5 2073 aa2.49□□□□□ -2.01
LINC00643-201ENST00000334389 NAV1Q8NEY1 1877 aa2.48□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 80.2 ms