RNA–Protein interactions for RNA: ENST00000319854.7

SHROOM1-201, Transcript of shroom family member 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHROOM1, Length 3,190 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-201ENST00000319854 ZDHHC9Q9Y397 364 aa18.81■□□□□ 0.6
SHROOM1-201ENST00000319854 CWC27Q6UX04 472 aaKnown RBP18.8■□□□□ 0.6
SHROOM1-201ENST00000319854 RIC3Q7Z5B4 369 aa18.8■□□□□ 0.6
SHROOM1-201ENST00000319854 TMEM94Q12767 1356 aa18.8■□□□□ 0.6
SHROOM1-201ENST00000319854 TSC1Q92574 1164 aa18.8■□□□□ 0.6
SHROOM1-201ENST00000319854 SYCE3A1L190 88 aa18.79■□□□□ 0.6
SHROOM1-201ENST00000319854 SMAP1Q8IYB5 467 aaPredicted RBP18.79■□□□□ 0.6
SHROOM1-201ENST00000319854 SPG7Q9UQ90 795 aa18.79■□□□□ 0.6
SHROOM1-201ENST00000319854 CCDC9Q9Y3X0 531 aaKnown RBP18.79■□□□□ 0.6
SHROOM1-201ENST00000319854 SALL3Q9BXA9 1300 aa18.79■□□□□ 0.6
SHROOM1-201ENST00000319854 RNF214Q8ND24 703 aa18.79■□□□□ 0.6
SHROOM1-201ENST00000319854 DDX54Q8TDD1 881 aaKnown RBP18.79■□□□□ 0.6
SHROOM1-201ENST00000319854 TATP17735 454 aaPredicted RBP18.78■□□□□ 0.6
SHROOM1-201ENST00000319854 NUCB2P80303 420 aa18.78■□□□□ 0.6
SHROOM1-201ENST00000319854 KIF1BPQ96EK5 621 aa18.78■□□□□ 0.6
SHROOM1-201ENST00000319854 C1orf167Q5SNV9 1468 aa18.78■□□□□ 0.6
SHROOM1-201ENST00000319854 FAM208AQ9UK61 1670 aaKnown RBP18.77■□□□□ 0.6
SHROOM1-201ENST00000319854 ZNF790Q6PG37 636 aa18.77■□□□□ 0.6
SHROOM1-201ENST00000319854 KSR2Q6VAB6 950 aa18.77■□□□□ 0.6
SHROOM1-201ENST00000319854 MPNDQ8N594 471 aa18.77■□□□□ 0.6
SHROOM1-201ENST00000319854 ZNF496Q96IT1 587 aaPredicted RBP18.77■□□□□ 0.6
SHROOM1-201ENST00000319854 SASS6Q6UVJ0 657 aa18.77■□□□□ 0.59
SHROOM1-201ENST00000319854 CCDC8Q9H0W5 538 aaPredicted RBP18.76■□□□□ 0.59
SHROOM1-201ENST00000319854 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.76■□□□□ 0.59
SHROOM1-201ENST00000319854 LRSAM1Q6UWE0 723 aa18.76■□□□□ 0.59
SHROOM1-201ENST00000319854 COPS6Q7L5N1 327 aa18.76■□□□□ 0.59
SHROOM1-201ENST00000319854 XAGE3Q8WTP9 111 aa18.76■□□□□ 0.59
SHROOM1-201ENST00000319854 USP16Q9Y5T5 823 aa18.76■□□□□ 0.59
SHROOM1-201ENST00000319854 LRRC37A3O60309 1634 aa18.75■□□□□ 0.59
SHROOM1-201ENST00000319854 MCCP23508 829 aa18.75■□□□□ 0.59
SHROOM1-201ENST00000319854 SUCLG2Q96I99 432 aa18.75■□□□□ 0.59
SHROOM1-201ENST00000319854 ATP5J2-PTCD1G3V325 749 aa18.75■□□□□ 0.59
SHROOM1-201ENST00000319854 PTCD1O75127 700 aaKnown RBP18.75■□□□□ 0.59
SHROOM1-201ENST00000319854 POLA2Q14181 598 aa18.75■□□□□ 0.59
SHROOM1-201ENST00000319854 CSPP1Q1MSJ5 1256 aa18.75■□□□□ 0.59
SHROOM1-201ENST00000319854 TMX3Q96JJ7 454 aa18.75■□□□□ 0.59
SHROOM1-201ENST00000319854 BICC1Q9H694 974 aaKnown RBP18.75■□□□□ 0.59
SHROOM1-201ENST00000319854 AACSQ86V21 672 aa18.75■□□□□ 0.59
SHROOM1-201ENST00000319854 MYD88Q99836 296 aa18.75■□□□□ 0.59
SHROOM1-201ENST00000319854 HOXB7P09629 217 aa18.74■□□□□ 0.59
SHROOM1-201ENST00000319854 CPA1P15085 419 aa18.74■□□□□ 0.59
SHROOM1-201ENST00000319854 TTC5Q8N0Z6 440 aa18.74■□□□□ 0.59
SHROOM1-201ENST00000319854 CLASRPQ8N2M8 674 aaKnown RBP18.74■□□□□ 0.59
SHROOM1-201ENST00000319854 IFIT2P09913 472 aaKnown RBP18.74■□□□□ 0.59
SHROOM1-201ENST00000319854 PI4K2BQ8TCG2 481 aa18.74■□□□□ 0.59
SHROOM1-201ENST00000319854 NPHP3Q7Z494 1330 aa18.73■□□□□ 0.59
SHROOM1-201ENST00000319854 STAP2Q9UGK3 403 aa18.73■□□□□ 0.59
SHROOM1-201ENST00000319854 ZNF330Q9Y3S2 320 aaPredicted RBP18.73■□□□□ 0.59
SHROOM1-201ENST00000319854 RAB11FIP3O75154 756 aa18.73■□□□□ 0.59
SHROOM1-201ENST00000319854 SLC52A2Q9HAB3 445 aa18.73■□□□□ 0.59
SHROOM1-201ENST00000319854 CCDC39Q9UFE4 941 aa18.73■□□□□ 0.59
SHROOM1-201ENST00000319854 GRM8O00222 908 aa18.73■□□□□ 0.59
SHROOM1-201ENST00000319854 PHKG2P15735 406 aa18.73■□□□□ 0.59
SHROOM1-201ENST00000319854 HYPKQ9NX55 129 aa18.73■□□□□ 0.59
SHROOM1-201ENST00000319854 CYP27B1O15528 508 aa18.72■□□□□ 0.59
SHROOM1-201ENST00000319854 MCM5P33992 734 aa18.72■□□□□ 0.59
SHROOM1-201ENST00000319854 FAM177BA6PVY3 158 aa18.71■□□□□ 0.59
SHROOM1-201ENST00000319854 DDX58O95786 925 aaKnown RBP18.71■□□□□ 0.59
SHROOM1-201ENST00000319854 DDX21Q9NR30 783 aaKnown RBP eCLIP18.71■□□□□ 0.59
SHROOM1-201ENST00000319854 ZSCAN20P17040 1043 aaPredicted RBP18.71■□□□□ 0.59
SHROOM1-201ENST00000319854 MTERF4Q7Z6M4 381 aaKnown RBP18.71■□□□□ 0.59
SHROOM1-201ENST00000319854 CCDC94Q9BW85 323 aaPredicted RBP18.71■□□□□ 0.59
SHROOM1-201ENST00000319854 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP18.71■□□□□ 0.59
SHROOM1-201ENST00000319854 PDIA6Q15084 440 aa18.71■□□□□ 0.58
SHROOM1-201ENST00000319854 CNTROBQ8N137 903 aa18.71■□□□□ 0.58
SHROOM1-201ENST00000319854 ZNF830Q96NB3 372 aaPredicted RBP18.71■□□□□ 0.58
SHROOM1-201ENST00000319854 STRN4Q9NRL3 753 aa18.71■□□□□ 0.58
SHROOM1-201ENST00000319854 DIAPH3Q9NSV4 1193 aa18.71■□□□□ 0.58
SHROOM1-201ENST00000319854 TLR7Q9NYK1 1049 aaKnown RBP18.71■□□□□ 0.58
SHROOM1-201ENST00000319854 NDUFB9Q9Y6M9 179 aa18.71■□□□□ 0.58
SHROOM1-201ENST00000319854 IGKV5-2P06315 115 aa18.7■□□□□ 0.58
SHROOM1-201ENST00000319854 ZNF710Q8N1W2 664 aa18.7■□□□□ 0.58
SHROOM1-201ENST00000319854 CHMP3Q9Y3E7 222 aa18.7■□□□□ 0.58
SHROOM1-201ENST00000319854 CABP4P57796 275 aa18.7■□□□□ 0.58
SHROOM1-201ENST00000319854 IFNL2Q8IZJ0 200 aa18.7■□□□□ 0.58
SHROOM1-201ENST00000319854 KAZALD1Q96I82 304 aa18.7■□□□□ 0.58
SHROOM1-201ENST00000319854 NEXNQ0ZGT2 675 aa18.69■□□□□ 0.58
SHROOM1-201ENST00000319854 G3BP1Q13283 466 aaKnown RBP eCLIP18.69■□□□□ 0.58
SHROOM1-201ENST00000319854 LINS1Q8NG48 757 aa18.69■□□□□ 0.58
SHROOM1-201ENST00000319854 CHMP4AQ9BY43 222 aa18.69■□□□□ 0.58
SHROOM1-201ENST00000319854 EPHA10Q5JZY3 1008 aa18.69■□□□□ 0.58
SHROOM1-201ENST00000319854 TOM1L2Q6ZVM7 507 aa18.69■□□□□ 0.58
SHROOM1-201ENST00000319854 BOLA2Q9H3K6 86 aa18.69■□□□□ 0.58
SHROOM1-201ENST00000319854 PRDM11Q9NQV5 511 aa18.69■□□□□ 0.58
SHROOM1-201ENST00000319854 RGPD5Q99666 1765 aa18.69■□□□□ 0.58
SHROOM1-201ENST00000319854 DMTNQ08495 405 aa18.68■□□□□ 0.58
SHROOM1-201ENST00000319854 UBE3BQ7Z3V4 1068 aa18.68■□□□□ 0.58
SHROOM1-201ENST00000319854 RASEFQ8IZ41 740 aa18.68■□□□□ 0.58
SHROOM1-201ENST00000319854 C17orf53Q8N3J3 647 aaPredicted RBP18.68■□□□□ 0.58
SHROOM1-201ENST00000319854 EDC3Q96F86 508 aaKnown RBP18.68■□□□□ 0.58
SHROOM1-201ENST00000319854 HSP90AB4PQ58FF6 505 aa18.67■□□□□ 0.58
SHROOM1-201ENST00000319854 CWC22Q9HCG8 908 aaKnown RBP18.67■□□□□ 0.58
SHROOM1-201ENST00000319854 ADAMTSL3P82987 1691 aa18.67■□□□□ 0.58
SHROOM1-201ENST00000319854 MEGF6O75095 1541 aa18.67■□□□□ 0.58
SHROOM1-201ENST00000319854 PTMAP06454 111 aaKnown RBP18.67■□□□□ 0.58
SHROOM1-201ENST00000319854 KCNJ4P48050 445 aa18.67■□□□□ 0.58
SHROOM1-201ENST00000319854 CADPS2Q86UW7 1296 aa18.67■□□□□ 0.58
SHROOM1-201ENST00000319854 MYRIPQ8NFW9 859 aa18.67■□□□□ 0.58
SHROOM1-201ENST00000319854 EAF2Q96CJ1 260 aaPredicted RBP18.67■□□□□ 0.58
SHROOM1-201ENST00000319854 ALDH1L1O75891 902 aa18.67■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 92.6 ms