RNA–Protein interactions for RNA: ENST00000303450.4

HOXC9-201, Transcript of homeobox C9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC9, Length 1,516 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9-201ENST00000303450 MAP3K15Q6ZN16 1313 aa31.34■■■□□ 2.61
HOXC9-201ENST00000303450 NLGN1Q8N2Q7 840 aa31.34■■■□□ 2.61
HOXC9-201ENST00000303450 ZBTB3Q9H5J0 574 aa31.34■■■□□ 2.61
HOXC9-201ENST00000303450 ERVV-1B6SEH8 477 aa31.32■■■□□ 2.6
HOXC9-201ENST00000303450 G2E3Q7L622 706 aa31.32■■■□□ 2.6
HOXC9-201ENST00000303450 BCL2L13Q9BXK5 485 aa31.32■■■□□ 2.6
HOXC9-201ENST00000303450 BCL2L12Q9HB09 334 aa31.32■■■□□ 2.6
HOXC9-201ENST00000303450 SMC4Q9NTJ3 1288 aa31.32■■■□□ 2.6
HOXC9-201ENST00000303450 ATF5Q9Y2D1 282 aaPredicted RBP31.32■■■□□ 2.6
HOXC9-201ENST00000303450 ZNF652Q9Y2D9 606 aa31.32■■■□□ 2.6
HOXC9-201ENST00000303450 SCN7AQ01118 1682 aa31.31■■■□□ 2.6
HOXC9-201ENST00000303450 FKBP8Q14318 412 aa31.31■■■□□ 2.6
HOXC9-201ENST00000303450 BCORQ6W2J9 1755 aa31.31■■■□□ 2.6
HOXC9-201ENST00000303450 DDX58O95786 925 aaKnown RBP31.3■■■□□ 2.6
HOXC9-201ENST00000303450 RARSP54136 660 aaKnown RBP31.3■■■□□ 2.6
HOXC9-201ENST00000303450 FLIIQ13045 1269 aa31.3■■■□□ 2.6
HOXC9-201ENST00000303450 ANKRD13DQ6ZTN6 518 aa31.3■■■□□ 2.6
HOXC9-201ENST00000303450 MRPL50Q8N5N7 158 aaKnown RBP31.3■■■□□ 2.6
HOXC9-201ENST00000303450 CLEC4GQ6UXB4 293 aa31.29■■■□□ 2.6
HOXC9-201ENST00000303450 HLFQ16534 295 aa31.29■■■□□ 2.6
HOXC9-201ENST00000303450 PLBD2Q8NHP8 589 aa31.29■■■□□ 2.6
HOXC9-201ENST00000303450 RGL2O15211 777 aa31.28■■■□□ 2.6
HOXC9-201ENST00000303450 SPON1Q9HCB6 807 aa31.28■■■□□ 2.6
HOXC9-201ENST00000303450 FKBP5Q13451 457 aaPredicted RBP31.27■■■□□ 2.6
HOXC9-201ENST00000303450 RIC3Q7Z5B4 369 aa31.27■■■□□ 2.6
HOXC9-201ENST00000303450 GIGYF2Q6Y7W6 1299 aaKnown RBP31.26■■■□□ 2.59
HOXC9-201ENST00000303450 NUP98P52948 1817 aa31.25■■■□□ 2.59
HOXC9-201ENST00000303450 POLD1P28340 1107 aa31.24■■■□□ 2.59
HOXC9-201ENST00000303450 TBC1D9BQ66K14 1250 aa31.24■■■□□ 2.59
HOXC9-201ENST00000303450 BICDL1Q6ZP65 573 aa31.24■■■□□ 2.59
HOXC9-201ENST00000303450 KSR2Q6VAB6 950 aa31.24■■■□□ 2.59
HOXC9-201ENST00000303450 PI4KAP2A4QPH2 592 aa31.23■■■□□ 2.59
HOXC9-201ENST00000303450 MMP10P09238 476 aa31.23■■■□□ 2.59
HOXC9-201ENST00000303450 PI4KAP1Q8N8J0 262 aa31.23■■■□□ 2.59
HOXC9-201ENST00000303450 NFIXQ14938 502 aa31.22■■■□□ 2.59
HOXC9-201ENST00000303450 HSP90AB3PQ58FF7 597 aa31.22■■■□□ 2.59
HOXC9-201ENST00000303450 TM4SF1P30408 202 aa31.21■■■□□ 2.59
HOXC9-201ENST00000303450 BRPF1P55201 1214 aaPredicted RBP31.21■■■□□ 2.59
HOXC9-201ENST00000303450 SETDB2Q96T68 719 aa31.21■■■□□ 2.59
HOXC9-201ENST00000303450 NIP7Q9Y221 180 aaKnown RBP eCLIP31.21■■■□□ 2.59
HOXC9-201ENST00000303450 MAP3K2Q9Y2U5 619 aa31.21■■■□□ 2.59
HOXC9-201ENST00000303450 BCAR3O75815 825 aa31.2■■■□□ 2.59
HOXC9-201ENST00000303450 COL24A1Q17RW2 1714 aa31.2■■■□□ 2.59
HOXC9-201ENST00000303450 ARFGEF2Q9Y6D5 1785 aa31.2■■■□□ 2.58
HOXC9-201ENST00000303450 PARP3Q9Y6F1 533 aa31.19■■■□□ 2.58
HOXC9-201ENST00000303450 PTPRCP08575 1304 aa31.19■■■□□ 2.58
HOXC9-201ENST00000303450 ADCY9O60503 1353 aa31.19■■■□□ 2.58
HOXC9-201ENST00000303450 PTGER2P43116 358 aa31.19■■■□□ 2.58
HOXC9-201ENST00000303450 TCIRG1Q13488 830 aa31.19■■■□□ 2.58
HOXC9-201ENST00000303450 ATP10DQ9P241 1426 aa31.18■■■□□ 2.58
HOXC9-201ENST00000303450 GPTP24298 496 aa31.18■■■□□ 2.58
HOXC9-201ENST00000303450 SGIP1Q9BQI5 828 aa31.18■■■□□ 2.58
HOXC9-201ENST00000303450 RCAN3Q9UKA8 241 aa31.18■■■□□ 2.58
HOXC9-201ENST00000303450 NOB1Q9ULX3 412 aaKnown RBP31.18■■■□□ 2.58
HOXC9-201ENST00000303450 KIF16BQ96L93 1317 aa31.18■■■□□ 2.58
HOXC9-201ENST00000303450 DDR1Q08345 913 aa31.17■■■□□ 2.58
HOXC9-201ENST00000303450 METTL22Q9BUU2 404 aaPredicted RBP31.17■■■□□ 2.58
HOXC9-201ENST00000303450 ZNF34Q8IZ26 560 aa31.16■■■□□ 2.58
HOXC9-201ENST00000303450 DNAAF4Q8WXU2 420 aa31.16■■■□□ 2.58
HOXC9-201ENST00000303450 CARMIL3Q8ND23 1372 aa31.16■■■□□ 2.58
HOXC9-201ENST00000303450 POLRMTO00411 1230 aaKnown RBP31.15■■■□□ 2.58
HOXC9-201ENST00000303450 MYD88Q99836 296 aa31.15■■■□□ 2.58
HOXC9-201ENST00000303450 ANKRD36CQ5JPF3 1778 aa31.14■■■□□ 2.58
HOXC9-201ENST00000303450 F6X3S4 739 aa31.14■■■□□ 2.58
HOXC9-201ENST00000303450 NEXNQ0ZGT2 675 aa31.14■■■□□ 2.58
HOXC9-201ENST00000303450 ATP5J2-PTCD1G3V325 749 aa31.14■■■□□ 2.57
HOXC9-201ENST00000303450 FRAT1Q92837 279 aaPredicted RBP31.14■■■□□ 2.57
HOXC9-201ENST00000303450 SERPINB2P05120 415 aa31.13■■■□□ 2.57
HOXC9-201ENST00000303450 PARP10Q53GL7 1025 aa31.13■■■□□ 2.57
HOXC9-201ENST00000303450 UBN2Q6ZU65 1347 aa31.12■■■□□ 2.57
HOXC9-201ENST00000303450 IPO8O15397 1037 aaKnown RBP31.12■■■□□ 2.57
HOXC9-201ENST00000303450 FAM177BA6PVY3 158 aa31.11■■■□□ 2.57
HOXC9-201ENST00000303450 NBPF5PQ86XG9 351 aaPredicted RBP31.11■■■□□ 2.57
HOXC9-201ENST00000303450 ISCA1Q9BUE6 129 aa31.11■■■□□ 2.57
HOXC9-201ENST00000303450 NPHP1O15259 732 aa31.1■■■□□ 2.57
HOXC9-201ENST00000303450 SLC4A10Q6U841 1118 aa31.1■■■□□ 2.57
HOXC9-201ENST00000303450 ARHGAP45Q92619 1136 aa31.1■■■□□ 2.57
HOXC9-201ENST00000303450 API5Q9BZZ5 524 aaKnown RBP31.1■■■□□ 2.57
HOXC9-201ENST00000303450 PPP1R42Q7Z4L9 355 aa31.09■■■□□ 2.57
HOXC9-201ENST00000303450 NLRP10Q86W26 655 aa31.09■■■□□ 2.57
HOXC9-201ENST00000303450 PPP1R1BQ9UD71 204 aaPredicted RBP31.09■■■□□ 2.57
HOXC9-201ENST00000303450 TRIM28Q13263 835 aaKnown RBP31.08■■■□□ 2.57
HOXC9-201ENST00000303450 SUSD4Q5VX71 490 aa31.08■■■□□ 2.57
HOXC9-201ENST00000303450 TPTE2Q6XPS3 522 aa31.08■■■□□ 2.57
HOXC9-201ENST00000303450 NYXQ9GZU5 481 aa31.08■■■□□ 2.57
HOXC9-201ENST00000303450 AFDNP55196 1824 aaKnown RBP31.07■■■□□ 2.57
HOXC9-201ENST00000303450 CNBD1Q8NA66 436 aa31.07■■■□□ 2.56
HOXC9-201ENST00000303450 IGKV5-2P06315 115 aa31.06■■■□□ 2.56
HOXC9-201ENST00000303450 GTF2E1P29083 439 aaPredicted RBP31.06■■■□□ 2.56
HOXC9-201ENST00000303450 ZKSCAN2Q63HK3 967 aa31.06■■■□□ 2.56
HOXC9-201ENST00000303450 CCDC191Q8NCU4 936 aa31.06■■■□□ 2.56
HOXC9-201ENST00000303450 LINS1Q8NG48 757 aa31.06■■■□□ 2.56
HOXC9-201ENST00000303450 UTP14AQ9BVJ6 771 aaKnown RBP31.06■■■□□ 2.56
HOXC9-201ENST00000303450 LRP5O75197 1615 aa31.05■■■□□ 2.56
HOXC9-201ENST00000303450 ATF7IPQ6VMQ6 1270 aa31.05■■■□□ 2.56
HOXC9-201ENST00000303450 CWC25Q9NXE8 425 aaPredicted RBP31.05■■■□□ 2.56
HOXC9-201ENST00000303450 CWF19L2Q2TBE0 894 aaKnown RBP31.04■■■□□ 2.56
HOXC9-201ENST00000303450 BEND3Q5T5X7 828 aa31.04■■■□□ 2.56
HOXC9-201ENST00000303450 PRR5LQ6MZQ0 368 aa31.04■■■□□ 2.56
HOXC9-201ENST00000303450 NEURL1BA8MQ27 555 aa31.03■■■□□ 2.56
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms