RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 HDAC9Q9UKV0 1011 aa9.09□□□□□ -0.95
SCN9A-201ENST00000303354 K7ELQ4 463 aaPredicted RBP9.08□□□□□ -0.96
SCN9A-201ENST00000303354 AMOTQ4VCS5 1084 aa9.08□□□□□ -0.96
SCN9A-201ENST00000303354 SSH1Q8WYL5 1049 aa9.08□□□□□ -0.96
SCN9A-201ENST00000303354 HLA-DOAP06340 250 aa9.08□□□□□ -0.96
SCN9A-201ENST00000303354 KRT24Q2M2I5 525 aa9.08□□□□□ -0.96
SCN9A-201ENST00000303354 HSP90B2PQ58FF3 399 aa9.08□□□□□ -0.96
SCN9A-201ENST00000303354 CACNA2D4Q7Z3S7 1137 aa9.08□□□□□ -0.96
SCN9A-201ENST00000303354 ZNF287Q9HBT7 754 aa9.08□□□□□ -0.96
SCN9A-201ENST00000303354 ANKRD30BQ9BXX2 1392 aa9.08□□□□□ -0.96
SCN9A-201ENST00000303354 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.08□□□□□ -0.96
SCN9A-201ENST00000303354 GJC1P36383 396 aa9.08□□□□□ -0.96
SCN9A-201ENST00000303354 TEX35Q5T0J7 233 aa9.08□□□□□ -0.96
SCN9A-201ENST00000303354 AEBP1Q8IUX7 1158 aa9.08□□□□□ -0.96
SCN9A-201ENST00000303354 KRT85P78386 507 aa9.08□□□□□ -0.96
SCN9A-201ENST00000303354 RAB3GAP1Q15042 981 aa9.08□□□□□ -0.96
SCN9A-201ENST00000303354 CDKL5O76039 1030 aa9.08□□□□□ -0.96
SCN9A-201ENST00000303354 CDR1P51861 262 aa9.08□□□□□ -0.96
SCN9A-201ENST00000303354 CATIPQ7Z7H3 387 aa9.08□□□□□ -0.96
SCN9A-201ENST00000303354 NLRP3Q96P20 1036 aa9.08□□□□□ -0.96
SCN9A-201ENST00000303354 SERPINA10Q9UK55 444 aa9.08□□□□□ -0.96
SCN9A-201ENST00000303354 LMOD1P29536 600 aaPredicted RBP9.08□□□□□ -0.96
SCN9A-201ENST00000303354 CFAP100Q494V2 611 aa9.08□□□□□ -0.96
SCN9A-201ENST00000303354 CCDC152Q4G0S7 254 aa9.08□□□□□ -0.96
SCN9A-201ENST00000303354 TSPYL1Q9H0U9 437 aa9.08□□□□□ -0.96
SCN9A-201ENST00000303354 GINS2Q9Y248 185 aa9.08□□□□□ -0.96
SCN9A-201ENST00000303354 CUX1P39880 1505 aa9.08□□□□□ -0.96
SCN9A-201ENST00000303354 NECAB1Q8N987 351 aa9.07□□□□□ -0.96
SCN9A-201ENST00000303354 JMYQ8N9B5 988 aa9.07□□□□□ -0.96
SCN9A-201ENST00000303354 CIZ1Q9ULV3 898 aaPredicted RBP9.07□□□□□ -0.96
SCN9A-201ENST00000303354 JDP2Q8WYK2 163 aa9.07□□□□□ -0.96
SCN9A-201ENST00000303354 CCDC194A0A1B0GVG4 234 aa9.07□□□□□ -0.96
SCN9A-201ENST00000303354 PRKCSHP14314 528 aaPredicted RBP9.07□□□□□ -0.96
SCN9A-201ENST00000303354 BCS1LQ9Y276 419 aa9.07□□□□□ -0.96
SCN9A-201ENST00000303354 CT47B1P0C2W7 299 aaPredicted RBP9.07□□□□□ -0.96
SCN9A-201ENST00000303354 CADPS2Q86UW7 1296 aa9.07□□□□□ -0.96
SCN9A-201ENST00000303354 WDR63Q8IWG1 891 aa9.07□□□□□ -0.96
SCN9A-201ENST00000303354 KIAA1107Q9UPP5 1409 aa9.07□□□□□ -0.96
SCN9A-201ENST00000303354 TCP10Q12799 353 aa9.07□□□□□ -0.96
SCN9A-201ENST00000303354 C8orf76Q96K31 380 aa9.07□□□□□ -0.96
SCN9A-201ENST00000303354 ZC3H12CQ9C0D7 883 aaKnown RBP9.07□□□□□ -0.96
SCN9A-201ENST00000303354 MAEAQ7L5Y9 396 aa9.07□□□□□ -0.96
SCN9A-201ENST00000303354 FLIIQ13045 1269 aa9.06□□□□□ -0.96
SCN9A-201ENST00000303354 TDRD12Q587J7 1177 aaKnown RBP9.06□□□□□ -0.96
SCN9A-201ENST00000303354 ADGRL1O94910 1474 aa9.06□□□□□ -0.96
SCN9A-201ENST00000303354 BRD4O60885 1362 aaPredicted RBP9.06□□□□□ -0.96
SCN9A-201ENST00000303354 RABEP1Q15276 862 aa9.06□□□□□ -0.96
SCN9A-201ENST00000303354 NOS1P29475 1434 aa9.06□□□□□ -0.96
SCN9A-201ENST00000303354 H0YHG0 523 aa9.06□□□□□ -0.96
SCN9A-201ENST00000303354 PRPF4BQ13523 1007 aaKnown RBP9.06□□□□□ -0.96
SCN9A-201ENST00000303354 FAM43AQ8N2R8 423 aa9.06□□□□□ -0.96
SCN9A-201ENST00000303354 ANKRD13DQ6ZTN6 518 aa9.06□□□□□ -0.96
SCN9A-201ENST00000303354 DACH1Q9UI36 760 aa9.06□□□□□ -0.96
SCN9A-201ENST00000303354 HARSP12081 509 aaKnown RBP9.06□□□□□ -0.96
SCN9A-201ENST00000303354 MKRN3Q13064 507 aaKnown RBP9.06□□□□□ -0.96
SCN9A-201ENST00000303354 U3KPZ7 1027 aaPredicted RBP9.06□□□□□ -0.96
SCN9A-201ENST00000303354 TMEM110-MUSTN1A8MSY1 372 aa9.06□□□□□ -0.96
SCN9A-201ENST00000303354 RAB11FIP3O75154 756 aa9.06□□□□□ -0.96
SCN9A-201ENST00000303354 PUS7Q96PZ0 661 aaKnown RBP9.06□□□□□ -0.96
SCN9A-201ENST00000303354 MYO6Q9UM54 1294 aa9.06□□□□□ -0.96
SCN9A-201ENST00000303354 IFT140Q96RY7 1462 aa9.06□□□□□ -0.96
SCN9A-201ENST00000303354 BAG4O95429 457 aaKnown RBP9.06□□□□□ -0.96
SCN9A-201ENST00000303354 BAG3O95817 575 aa9.06□□□□□ -0.96
SCN9A-201ENST00000303354 DESP17661 470 aa9.06□□□□□ -0.96
SCN9A-201ENST00000303354 AFMP43652 599 aa9.06□□□□□ -0.96
SCN9A-201ENST00000303354 ARGLU1Q9NWB6 273 aaPredicted RBP9.06□□□□□ -0.96
SCN9A-201ENST00000303354 SNRPA1P09661 255 aaKnown RBP9.05□□□□□ -0.96
SCN9A-201ENST00000303354 CWF19L2Q2TBE0 894 aaKnown RBP9.05□□□□□ -0.96
SCN9A-201ENST00000303354 HYPKQ9NX55 129 aa9.05□□□□□ -0.96
SCN9A-201ENST00000303354 DBF4Q9UBU7 674 aaPredicted RBP9.05□□□□□ -0.96
SCN9A-201ENST00000303354 ATAD2Q6PL18 1390 aa9.05□□□□□ -0.96
SCN9A-201ENST00000303354 HCLS1P14317 486 aaPredicted RBP9.05□□□□□ -0.96
SCN9A-201ENST00000303354 LMBR1LQ6UX01 489 aa9.05□□□□□ -0.96
SCN9A-201ENST00000303354 SLF2Q8IX21 1173 aa9.05□□□□□ -0.96
SCN9A-201ENST00000303354 CCDC39Q9UFE4 941 aa9.05□□□□□ -0.96
SCN9A-201ENST00000303354 USP16Q9Y5T5 823 aa9.05□□□□□ -0.96
SCN9A-201ENST00000303354 CASKIN1Q8WXD9 1431 aa9.05□□□□□ -0.96
SCN9A-201ENST00000303354 PDCP20941 246 aa9.05□□□□□ -0.96
SCN9A-201ENST00000303354 TRIM21P19474 475 aaKnown RBP9.05□□□□□ -0.96
SCN9A-201ENST00000303354 KCNQ4P56696 695 aa9.05□□□□□ -0.96
SCN9A-201ENST00000303354 MFSD6Q6ZSS7 791 aa9.05□□□□□ -0.96
SCN9A-201ENST00000303354 TSG101Q99816 390 aa9.05□□□□□ -0.96
SCN9A-201ENST00000303354 NUP62CLQ9H1M0 184 aa9.05□□□□□ -0.96
SCN9A-201ENST00000303354 LRPPRCP42704 1394 aaKnown RBP9.05□□□□□ -0.96
SCN9A-201ENST00000303354 UTP14AQ9BVJ6 771 aaKnown RBP9.05□□□□□ -0.96
SCN9A-201ENST00000303354 EPRSP07814 1512 aaKnown RBP9.05□□□□□ -0.96
SCN9A-201ENST00000303354 ERLIN2O94905 339 aa9.05□□□□□ -0.96
SCN9A-201ENST00000303354 TRAPPC3LQ5T215 181 aa9.05□□□□□ -0.96
SCN9A-201ENST00000303354 ARHGAP27Q6ZUM4 889 aa9.05□□□□□ -0.96
SCN9A-201ENST00000303354 MBIPQ9NS73 344 aa9.05□□□□□ -0.96
SCN9A-201ENST00000303354 STK32BQ9NY57 414 aa9.05□□□□□ -0.96
SCN9A-201ENST00000303354 ARAP1Q96P48 1450 aa9.05□□□□□ -0.96
SCN9A-201ENST00000303354 DAPK1P53355 1430 aa9.05□□□□□ -0.96
SCN9A-201ENST00000303354 DDX39AO00148 427 aaKnown RBP9.05□□□□□ -0.96
SCN9A-201ENST00000303354 CTNNA2P26232 953 aa9.05□□□□□ -0.96
SCN9A-201ENST00000303354 CCDC150Q8NCX0 1101 aa9.05□□□□□ -0.96
SCN9A-201ENST00000303354 NF2P35240 595 aa9.04□□□□□ -0.96
SCN9A-201ENST00000303354 GPIHBP1Q8IV16 184 aa9.04□□□□□ -0.96
SCN9A-201ENST00000303354 TRMT1Q9NXH9 659 aaKnown RBP9.04□□□□□ -0.96
SCN9A-201ENST00000303354 SYCE3A1L190 88 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms