RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 ARFGEF2Q9Y6D5 1785 aa19.78■□□□□ 0.76
CCDC88B-201ENST00000301897 SRGNP10124 158 aa19.78■□□□□ 0.76
CCDC88B-201ENST00000301897 ZNF219Q9P2Y4 722 aaPredicted RBP19.78■□□□□ 0.76
CCDC88B-201ENST00000301897 POTECB2RU33 542 aa19.77■□□□□ 0.76
CCDC88B-201ENST00000301897 RGL2O15211 777 aa19.77■□□□□ 0.76
CCDC88B-201ENST00000301897 PRKAR2BP31323 418 aa19.77■□□□□ 0.76
CCDC88B-201ENST00000301897 PRPF40BQ6NWY9 871 aaKnown RBP19.77■□□□□ 0.76
CCDC88B-201ENST00000301897 TNS4Q8IZW8 715 aa19.76■□□□□ 0.75
CCDC88B-201ENST00000301897 RTF1Q92541 710 aaKnown RBP19.76■□□□□ 0.75
CCDC88B-201ENST00000301897 RSPH6AQ9H0K4 717 aa19.76■□□□□ 0.75
CCDC88B-201ENST00000301897 SLX4Q8IY92 1834 aa19.76■□□□□ 0.75
CCDC88B-201ENST00000301897 SNRPA1P09661 255 aaKnown RBP19.75■□□□□ 0.75
CCDC88B-201ENST00000301897 CHADLQ6NUI6 762 aa19.75■□□□□ 0.75
CCDC88B-201ENST00000301897 NBPF5PQ86XG9 351 aaPredicted RBP19.75■□□□□ 0.75
CCDC88B-201ENST00000301897 CCDC24Q8N4L8 307 aa19.75■□□□□ 0.75
CCDC88B-201ENST00000301897 CACNA1SQ13698 1873 aa19.74■□□□□ 0.75
CCDC88B-201ENST00000301897 IQCA1LA6NCM1 817 aa19.74■□□□□ 0.75
CCDC88B-201ENST00000301897 CNGB1Q14028 1251 aaPredicted RBP19.74■□□□□ 0.75
CCDC88B-201ENST00000301897 PHACTR3Q96KR7 559 aa19.74■□□□□ 0.75
CCDC88B-201ENST00000301897 CREBZFQ9NS37 354 aa19.74■□□□□ 0.75
CCDC88B-201ENST00000301897 HSPA1AP0DMV8 641 aaKnown RBP19.73■□□□□ 0.75
CCDC88B-201ENST00000301897 HSPA1BP0DMV9 641 aaKnown RBP19.73■□□□□ 0.75
CCDC88B-201ENST00000301897 NPR1P16066 1061 aa19.73■□□□□ 0.75
CCDC88B-201ENST00000301897 USP16Q9Y5T5 823 aa19.73■□□□□ 0.75
CCDC88B-201ENST00000301897 KCNQ3O43525 872 aa19.72■□□□□ 0.75
CCDC88B-201ENST00000301897 HTATSF1O43719 755 aaKnown RBP19.72■□□□□ 0.75
CCDC88B-201ENST00000301897 CCDC93Q567U6 631 aa19.72■□□□□ 0.75
CCDC88B-201ENST00000301897 TPTE2Q6XPS3 522 aa19.72■□□□□ 0.75
CCDC88B-201ENST00000301897 DDNO94850 711 aaPredicted RBP19.71■□□□□ 0.75
CCDC88B-201ENST00000301897 L3MBTL3Q96JM7 780 aaPredicted RBP19.71■□□□□ 0.75
CCDC88B-201ENST00000301897 SCN4AP35499 1836 aa19.71■□□□□ 0.75
CCDC88B-201ENST00000301897 KLRG2A4D1S0 409 aaPredicted RBP19.7■□□□□ 0.74
CCDC88B-201ENST00000301897 U2AF1L5P0DN76 240 aaPredicted RBP19.7■□□□□ 0.74
CCDC88B-201ENST00000301897 U2AF1Q01081 240 aaKnown RBP eCLIP19.7■□□□□ 0.74
CCDC88B-201ENST00000301897 C7orf43Q8WVR3 580 aa19.7■□□□□ 0.74
CCDC88B-201ENST00000301897 LDHDQ86WU2 507 aa19.69■□□□□ 0.74
CCDC88B-201ENST00000301897 RTKN2Q8IZC4 609 aa19.69■□□□□ 0.74
CCDC88B-201ENST00000301897 FKBP4Q02790 459 aaKnown RBP eCLIP19.68■□□□□ 0.74
CCDC88B-201ENST00000301897 MCM10Q7L590 875 aa19.68■□□□□ 0.74
CCDC88B-201ENST00000301897 NIP7Q9Y221 180 aaKnown RBP eCLIP19.68■□□□□ 0.74
CCDC88B-201ENST00000301897 ALDH1B1P30837 517 aa19.67■□□□□ 0.74
CCDC88B-201ENST00000301897 PIP4K2AP48426 406 aaPredicted RBP19.67■□□□□ 0.74
CCDC88B-201ENST00000301897 TAF1DQ9H5J8 278 aaPredicted RBP19.66■□□□□ 0.74
CCDC88B-201ENST00000301897 PRAMEF22A3QJZ6 481 aa19.65■□□□□ 0.74
CCDC88B-201ENST00000301897 TAF7Q15545 349 aaPredicted RBP19.65■□□□□ 0.74
CCDC88B-201ENST00000301897 NBPF26B4DH59 902 aa19.64■□□□□ 0.73
CCDC88B-201ENST00000301897 CAPN15O75808 1086 aa19.64■□□□□ 0.73
CCDC88B-201ENST00000301897 NEFMP07197 916 aa19.64■□□□□ 0.73
CCDC88B-201ENST00000301897 POTEIP0CG38 1075 aa19.64■□□□□ 0.73
CCDC88B-201ENST00000301897 POTEJP0CG39 1038 aa19.64■□□□□ 0.73
CCDC88B-201ENST00000301897 GTF2E1P29083 439 aaPredicted RBP19.64■□□□□ 0.73
CCDC88B-201ENST00000301897 PPP2R1AP30153 589 aa19.64■□□□□ 0.73
CCDC88B-201ENST00000301897 NBPF10Q6P3W6 841 aaKnown RBP19.64■□□□□ 0.73
CCDC88B-201ENST00000301897 NBPF15Q8N660 670 aa19.64■□□□□ 0.73
CCDC88B-201ENST00000301897 NYXQ9GZU5 481 aa19.64■□□□□ 0.73
CCDC88B-201ENST00000301897 MKRN1Q9UHC7 482 aaKnown RBP19.64■□□□□ 0.73
CCDC88B-201ENST00000301897 CNTNAP1P78357 1384 aa19.63■□□□□ 0.73
CCDC88B-201ENST00000301897 PASKQ96RG2 1323 aa19.63■□□□□ 0.73
CCDC88B-201ENST00000301897 PNISRQ8TF01 805 aaKnown RBP19.63■□□□□ 0.73
CCDC88B-201ENST00000301897 ZNF277Q9NRM2 450 aaPredicted RBP19.63■□□□□ 0.73
CCDC88B-201ENST00000301897 HACL1Q9UJ83 578 aa19.63■□□□□ 0.73
CCDC88B-201ENST00000301897 LAMB4A4D0S4 1761 aa19.62■□□□□ 0.73
CCDC88B-201ENST00000301897 PNMA8AQ86V59 439 aaPredicted RBP19.62■□□□□ 0.73
CCDC88B-201ENST00000301897 ERVV-1B6SEH8 477 aa19.61■□□□□ 0.73
CCDC88B-201ENST00000301897 DCTN1Q14203 1278 aa19.61■□□□□ 0.73
CCDC88B-201ENST00000301897 GRIPAP1Q4V328 841 aa19.61■□□□□ 0.73
CCDC88B-201ENST00000301897 CC2D2BQ6DHV5 1058 aa19.61■□□□□ 0.73
CCDC88B-201ENST00000301897 TMEM88BA6NKF7 163 aa19.6■□□□□ 0.73
CCDC88B-201ENST00000301897 IARSP41252 1262 aaKnown RBP19.6■□□□□ 0.73
CCDC88B-201ENST00000301897 EAPPQ56P03 285 aaPredicted RBP19.6■□□□□ 0.73
CCDC88B-201ENST00000301897 PSMD1Q99460 953 aa19.6■□□□□ 0.73
CCDC88B-201ENST00000301897 ZNF541Q9H0D2 1346 aa19.59■□□□□ 0.73
CCDC88B-201ENST00000301897 FAM177BA6PVY3 158 aa19.59■□□□□ 0.73
CCDC88B-201ENST00000301897 FZD9O00144 591 aa19.59■□□□□ 0.73
CCDC88B-201ENST00000301897 EPHX2P34913 555 aa19.59■□□□□ 0.73
CCDC88B-201ENST00000301897 HLFQ16534 295 aa19.59■□□□□ 0.73
CCDC88B-201ENST00000301897 CRY2Q49AN0 593 aa19.59■□□□□ 0.73
CCDC88B-201ENST00000301897 SYNE4Q8N205 404 aa19.59■□□□□ 0.73
CCDC88B-201ENST00000301897 JDP2Q8WYK2 163 aa19.59■□□□□ 0.73
CCDC88B-201ENST00000301897 KIF6Q6ZMV9 814 aa19.58■□□□□ 0.72
CCDC88B-201ENST00000301897 GPC2Q8N158 579 aa19.58■□□□□ 0.72
CCDC88B-201ENST00000301897 AIDAQ96BJ3 306 aa19.58■□□□□ 0.72
CCDC88B-201ENST00000301897 CLEC11AQ9Y240 323 aa19.58■□□□□ 0.72
CCDC88B-201ENST00000301897 RIC1Q4ADV7 1423 aa19.58■□□□□ 0.72
CCDC88B-201ENST00000301897 NUP98P52948 1817 aa19.58■□□□□ 0.72
CCDC88B-201ENST00000301897 IBTKQ9P2D0 1353 aaPredicted RBP19.57■□□□□ 0.72
CCDC88B-201ENST00000301897 MAP3K15Q6ZN16 1313 aa19.57■□□□□ 0.72
CCDC88B-201ENST00000301897 ITGBL1O95965 494 aaPredicted RBP19.57■□□□□ 0.72
CCDC88B-201ENST00000301897 PRDM10Q9NQV6 1147 aa19.57■□□□□ 0.72
CCDC88B-201ENST00000301897 OLFM4Q6UX06 510 aa19.56■□□□□ 0.72
CCDC88B-201ENST00000301897 RPGRQ92834 1020 aaKnown RBP19.56■□□□□ 0.72
CCDC88B-201ENST00000301897 KDM3BQ7LBC6 1761 aa19.56■□□□□ 0.72
CCDC88B-201ENST00000301897 ADAMTSL1Q8N6G6 1762 aa19.56■□□□□ 0.72
CCDC88B-201ENST00000301897 DLG5Q8TDM6 1919 aa19.55■□□□□ 0.72
CCDC88B-201ENST00000301897 HOXA10P31260 410 aaPredicted RBP19.55■□□□□ 0.72
CCDC88B-201ENST00000301897 CTCFP49711 727 aaPredicted RBP19.55■□□□□ 0.72
CCDC88B-201ENST00000301897 EIF6P56537 245 aaKnown RBP19.55■□□□□ 0.72
CCDC88B-201ENST00000301897 PNNQ9H307 717 aaKnown RBP19.55■□□□□ 0.72
CCDC88B-201ENST00000301897 MIS18AQ9NYP9 233 aa19.55■□□□□ 0.72
CCDC88B-201ENST00000301897 RNF123Q5XPI4 1314 aa19.54■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 98.1 ms