RNA–Protein interactions for RNA: ENST00000264010.8

CTCF-201, Transcript of CCCTC-binding factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTCF, Length 3,939 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-201ENST00000264010 CAVIN1Q6NZI2 390 aaKnown RBP19.54■□□□□ 0.72
CTCF-201ENST00000264010 MPNDQ8N594 471 aa19.54■□□□□ 0.72
CTCF-201ENST00000264010 TMX3Q96JJ7 454 aa19.54■□□□□ 0.72
CTCF-201ENST00000264010 PSMA5P28066 241 aa19.54■□□□□ 0.72
CTCF-201ENST00000264010 SLC52A2Q9HAB3 445 aa19.53■□□□□ 0.72
CTCF-201ENST00000264010 EVI5LQ96CN4 794 aa19.53■□□□□ 0.72
CTCF-201ENST00000264010 CCDC8Q9H0W5 538 aaPredicted RBP19.53■□□□□ 0.72
CTCF-201ENST00000264010 CYP46A1Q9Y6A2 500 aa19.53■□□□□ 0.72
CTCF-201ENST00000264010 PHF14O94880 888 aa19.53■□□□□ 0.72
CTCF-201ENST00000264010 CD2BP2O95400 341 aaKnown RBP19.53■□□□□ 0.72
CTCF-201ENST00000264010 MBD3O95983 291 aa19.53■□□□□ 0.72
CTCF-201ENST00000264010 PA2G4Q9UQ80 394 aaKnown RBP19.53■□□□□ 0.72
CTCF-201ENST00000264010 RGS12O14924 1447 aa19.53■□□□□ 0.72
CTCF-201ENST00000264010 NCAPD2Q15021 1401 aa19.52■□□□□ 0.72
CTCF-201ENST00000264010 NEUROD6Q96NK8 337 aa19.52■□□□□ 0.71
CTCF-201ENST00000264010 WDR33Q9C0J8 1336 aaKnown RBP19.51■□□□□ 0.71
CTCF-201ENST00000264010 GOLGA6L4A6NEF3 574 aa19.51■□□□□ 0.71
CTCF-201ENST00000264010 KIAA2012Q0VF49 1180 aa19.51■□□□□ 0.71
CTCF-201ENST00000264010 NAP1L2Q9ULW6 460 aaPredicted RBP19.51■□□□□ 0.71
CTCF-201ENST00000264010 RIMS1Q86UR5 1692 aaKnown RBP19.51■□□□□ 0.71
CTCF-201ENST00000264010 ERBB3P21860 1342 aa19.51■□□□□ 0.71
CTCF-201ENST00000264010 DDX17Q92841 729 aaKnown RBP19.51■□□□□ 0.71
CTCF-201ENST00000264010 SETD1BQ9UPS6 1966 aaKnown RBP19.51■□□□□ 0.71
CTCF-201ENST00000264010 TMEM94Q12767 1356 aa19.51■□□□□ 0.71
CTCF-201ENST00000264010 KIF2CQ99661 725 aa19.5■□□□□ 0.71
CTCF-201ENST00000264010 JAKMIP1Q96N16 626 aaKnown RBP19.5■□□□□ 0.71
CTCF-201ENST00000264010 BOLA2Q9H3K6 86 aa19.5■□□□□ 0.71
CTCF-201ENST00000264010 RRAGDQ9NQL2 400 aaPredicted RBP19.5■□□□□ 0.71
CTCF-201ENST00000264010 A0A087WZG4 1122 aa19.49■□□□□ 0.71
CTCF-201ENST00000264010 HSP90B1P14625 803 aaKnown RBP19.49■□□□□ 0.71
CTCF-201ENST00000264010 DLG5Q8TDM6 1919 aa19.49■□□□□ 0.71
CTCF-201ENST00000264010 CEMIPQ8WUJ3 1361 aa19.49■□□□□ 0.71
CTCF-201ENST00000264010 PHKG2P15735 406 aa19.49■□□□□ 0.71
CTCF-201ENST00000264010 CASTP20810 708 aaKnown RBP19.48■□□□□ 0.71
CTCF-201ENST00000264010 POLA2Q14181 598 aa19.48■□□□□ 0.71
CTCF-201ENST00000264010 KLHL40Q2TBA0 621 aa19.48■□□□□ 0.71
CTCF-201ENST00000264010 DNAJC2Q99543 621 aaKnown RBP19.48■□□□□ 0.71
CTCF-201ENST00000264010 PDRG1Q9NUG6 133 aa19.48■□□□□ 0.71
CTCF-201ENST00000264010 AXIN2Q9Y2T1 843 aa19.48■□□□□ 0.71
CTCF-201ENST00000264010 NASPP49321 788 aaPredicted RBP19.48■□□□□ 0.71
CTCF-201ENST00000264010 PROSER3Q2NL68 480 aa19.48■□□□□ 0.71
CTCF-201ENST00000264010 PRPF40BQ6NWY9 871 aaKnown RBP19.48■□□□□ 0.71
CTCF-201ENST00000264010 UBE3BQ7Z3V4 1068 aa19.48■□□□□ 0.71
CTCF-201ENST00000264010 ZGPATQ8N5A5 531 aaKnown RBP19.48■□□□□ 0.71
CTCF-201ENST00000264010 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.48■□□□□ 0.719e-7■■■□□ 18.2
CTCF-201ENST00000264010 EPB41L2O43491 1005 aaKnown RBP19.48■□□□□ 0.71
CTCF-201ENST00000264010 ZCRB1Q8TBF4 217 aaKnown RBP19.48■□□□□ 0.71
CTCF-201ENST00000264010 BICC1Q9H694 974 aaKnown RBP19.48■□□□□ 0.71
CTCF-201ENST00000264010 PTCD1O75127 700 aaKnown RBP19.47■□□□□ 0.71
CTCF-201ENST00000264010 HSPA2P54652 639 aa19.47■□□□□ 0.71
CTCF-201ENST00000264010 LRRFIP1Q32MZ4 808 aaKnown RBP19.47■□□□□ 0.71
CTCF-201ENST00000264010 PEAK1Q9H792 1746 aa19.47■□□□□ 0.71
CTCF-201ENST00000264010 ZSCAN31Q96LW9 406 aaPredicted RBP19.47■□□□□ 0.71
CTCF-201ENST00000264010 TOPAZ1Q8N9V7 1692 aa19.47■□□□□ 0.71
CTCF-201ENST00000264010 ATP5J2-PTCD1G3V325 749 aa19.47■□□□□ 0.71
CTCF-201ENST00000264010 VIRMAQ69YN4 1812 aaKnown RBP19.46■□□□□ 0.71
CTCF-201ENST00000264010 SUCLG2Q96I99 432 aa19.46■□□□□ 0.71
CTCF-201ENST00000264010 ZNF496Q96IT1 587 aaPredicted RBP19.46■□□□□ 0.71
CTCF-201ENST00000264010 LIMCH1Q9UPQ0 1083 aa19.46■□□□□ 0.71
CTCF-201ENST00000264010 METTL22Q9BUU2 404 aaPredicted RBP19.46■□□□□ 0.71
CTCF-201ENST00000264010 SGSM2O43147 1006 aa19.45■□□□□ 0.7
CTCF-201ENST00000264010 VPS37CA5D8V6 355 aaPredicted RBP19.45■□□□□ 0.7
CTCF-201ENST00000264010 TPM2P07951 284 aa19.45■□□□□ 0.7
CTCF-201ENST00000264010 XRCC6P12956 609 aaKnown RBP eCLIP19.45■□□□□ 0.7
CTCF-201ENST00000264010 PXDNLA1KZ92 1463 aa19.45■□□□□ 0.7
CTCF-201ENST00000264010 INTS4Q96HW7 963 aaKnown RBP19.45■□□□□ 0.7
CTCF-201ENST00000264010 PANK2Q9BZ23 570 aa19.45■□□□□ 0.7
CTCF-201ENST00000264010 PIP4K2AP48426 406 aaPredicted RBP19.44■□□□□ 0.7
CTCF-201ENST00000264010 PDZRN4Q6ZMN7 1036 aaPredicted RBP19.44■□□□□ 0.7
CTCF-201ENST00000264010 JARID2Q92833 1246 aaPredicted RBP19.44■□□□□ 0.7
CTCF-201ENST00000264010 BLOC1S2Q6QNY1 142 aa19.44■□□□□ 0.7
CTCF-201ENST00000264010 C1orf167Q5SNV9 1468 aa19.44■□□□□ 0.7
CTCF-201ENST00000264010 PRAMEF22A3QJZ6 481 aa19.44■□□□□ 0.7
CTCF-201ENST00000264010 ANKRD1Q15327 319 aa19.44■□□□□ 0.7
CTCF-201ENST00000264010 KIF6Q6ZMV9 814 aa19.44■□□□□ 0.7
CTCF-201ENST00000264010 UNC5CLQ8IV45 518 aa19.44■□□□□ 0.7
CTCF-201ENST00000264010 PIK3C2AO00443 1686 aa19.43■□□□□ 0.7
CTCF-201ENST00000264010 GCKRQ14397 625 aa19.42■□□□□ 0.7
CTCF-201ENST00000264010 KIF3AQ9Y496 699 aa19.42■□□□□ 0.7
CTCF-201ENST00000264010 RAD50Q92878 1312 aa19.42■□□□□ 0.7
CTCF-201ENST00000264010 SH2B1Q9NRF2 756 aaPredicted RBP19.42■□□□□ 0.7
CTCF-201ENST00000264010 HSPA4P34932 840 aa19.41■□□□□ 0.7
CTCF-201ENST00000264010 SYTL4Q96C24 671 aaPredicted RBP19.41■□□□□ 0.7
CTCF-201ENST00000264010 PDCL3Q9H2J4 239 aa19.41■□□□□ 0.7
CTCF-201ENST00000264010 CWC25Q9NXE8 425 aaPredicted RBP19.41■□□□□ 0.7
CTCF-201ENST00000264010 TMOD3Q9NYL9 352 aa19.41■□□□□ 0.7
CTCF-201ENST00000264010 PDIA4P13667 645 aaKnown RBP19.41■□□□□ 0.7
CTCF-201ENST00000264010 PDCP20941 246 aa19.41■□□□□ 0.7
CTCF-201ENST00000264010 NEURL1BA8MQ27 555 aa19.41■□□□□ 0.7
CTCF-201ENST00000264010 PALD1Q9ULE6 856 aa19.41■□□□□ 0.7
CTCF-201ENST00000264010 APPP05067 770 aa19.4■□□□□ 0.7
CTCF-201ENST00000264010 PCDH11XQ9BZA7 1347 aa19.4■□□□□ 0.7
CTCF-201ENST00000264010 PCDH11YQ9BZA8 1340 aa19.4■□□□□ 0.7
CTCF-201ENST00000264010 XRN1Q8IZH2 1706 aaKnown RBP19.4■□□□□ 0.7
CTCF-201ENST00000264010 FMN2Q9NZ56 1722 aa19.4■□□□□ 0.7
CTCF-201ENST00000264010 VGLL3A8MV65 326 aa19.4■□□□□ 0.7
CTCF-201ENST00000264010 KRT32Q14532 448 aa19.4■□□□□ 0.7
CTCF-201ENST00000264010 DRC7Q8IY82 874 aa19.4■□□□□ 0.7
CTCF-201ENST00000264010 FAM184AQ8NB25 1140 aa19.4■□□□□ 0.7
CTCF-201ENST00000264010 USP16Q9Y5T5 823 aa19.4■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms