RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 OVOS2Q6IE36 1432 aa15.15■□□□□ 0.02
LIG1-201ENST00000263274 KCNA6P17658 529 aa15.15■□□□□ 0.02
LIG1-201ENST00000263274 CSPP1Q1MSJ5 1256 aa15.15■□□□□ 0.02
LIG1-201ENST00000263274 ESCO1Q5FWF5 840 aa15.15■□□□□ 0.02
LIG1-201ENST00000263274 RUFY3Q7L099 469 aa15.15■□□□□ 0.02
LIG1-201ENST00000263274 PDLIM2Q96JY6 352 aa15.15■□□□□ 0.02
LIG1-201ENST00000263274 ADCK5Q3MIX3 580 aa15.15■□□□□ 0.02
LIG1-201ENST00000263274 C1orf141Q5JVX7 400 aa15.15■□□□□ 0.02
LIG1-201ENST00000263274 NBPF6Q5VWK0 638 aa15.15■□□□□ 0.02
LIG1-201ENST00000263274 NBPF4Q96M43 638 aa15.15■□□□□ 0.02
LIG1-201ENST00000263274 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.15■□□□□ 0.02
LIG1-201ENST00000263274 CYP46A1Q9Y6A2 500 aa15.15■□□□□ 0.02
LIG1-201ENST00000263274 SALL3Q9BXA9 1300 aa15.15■□□□□ 0.02
LIG1-201ENST00000263274 FAM177BA6PVY3 158 aa15.15■□□□□ 0.02
LIG1-201ENST00000263274 GLRX3O76003 335 aaKnown RBP15.15■□□□□ 0.02
LIG1-201ENST00000263274 G3BP1Q13283 466 aaKnown RBP eCLIP15.15■□□□□ 0.024e-6■■■■□ 21.1
LIG1-201ENST00000263274 HSP90AB4PQ58FF6 505 aa15.15■□□□□ 0.02
LIG1-201ENST00000263274 TSC1Q92574 1164 aa15.15■□□□□ 0.02
LIG1-201ENST00000263274 PRDM10Q9NQV6 1147 aa15.15■□□□□ 0.02
LIG1-201ENST00000263274 CCDC183Q5T5S1 534 aa15.14■□□□□ 0.01
LIG1-201ENST00000263274 ZHX1Q9UKY1 873 aaPredicted RBP15.14■□□□□ 0.01
LIG1-201ENST00000263274 ATP6V1DQ9Y5K8 247 aa15.14■□□□□ 0.01
LIG1-201ENST00000263274 HS1BP3Q53T59 392 aa15.14■□□□□ 0.01
LIG1-201ENST00000263274 DRC7Q8IY82 874 aa15.14■□□□□ 0.01
LIG1-201ENST00000263274 PI4K2BQ8TCG2 481 aa15.14■□□□□ 0.01
LIG1-201ENST00000263274 RAD50Q92878 1312 aa15.14■□□□□ 0.01
LIG1-201ENST00000263274 HTATSF1O43719 755 aaKnown RBP15.13■□□□□ 0.01
LIG1-201ENST00000263274 MYL6BP14649 208 aa15.13■□□□□ 0.01
LIG1-201ENST00000263274 LARP1BQ659C4 914 aaKnown RBP15.13■□□□□ 0.01
LIG1-201ENST00000263274 KLHDC4Q8TBB5 520 aa15.13■□□□□ 0.01
LIG1-201ENST00000263274 FSD1Q9BTV5 496 aa15.13■□□□□ 0.01
LIG1-201ENST00000263274 TFIP11Q9UBB9 837 aaKnown RBP15.13■□□□□ 0.01
LIG1-201ENST00000263274 PRAMEF22A3QJZ6 481 aa15.13■□□□□ 0.01
LIG1-201ENST00000263274 F13A1P00488 732 aa15.13■□□□□ 0.01
LIG1-201ENST00000263274 EIF4A1P60842 406 aaKnown RBP15.12■□□□□ 0.01
LIG1-201ENST00000263274 LSG1Q9H089 658 aaKnown RBP15.12■□□□□ 0.01
LIG1-201ENST00000263274 ECHDC1Q9NTX5 307 aa15.12■□□□□ 0.01
LIG1-201ENST00000263274 ZNF500O60304 480 aaPredicted RBP15.12■□□□□ 0.01
LIG1-201ENST00000263274 FAM227BQ96M60 508 aa15.12■□□□□ 0.01
LIG1-201ENST00000263274 RIMS1Q86UR5 1692 aaKnown RBP15.12■□□□□ 0.01
LIG1-201ENST00000263274 CEP170BQ9Y4F5 1589 aaPredicted RBP15.12■□□□□ 0.01
LIG1-201ENST00000263274 PPFIA3O75145 1194 aa15.11■□□□□ 0.01
LIG1-201ENST00000263274 PIP4K2AP48426 406 aaPredicted RBP15.11■□□□□ 0.01
LIG1-201ENST00000263274 PROSER3Q2NL68 480 aa15.11■□□□□ 0.01
LIG1-201ENST00000263274 BEND3Q5T5X7 828 aa15.11■□□□□ 0.01
LIG1-201ENST00000263274 RIC3Q7Z5B4 369 aa15.11■□□□□ 0.01
LIG1-201ENST00000263274 UBE2HP62256 183 aa15.11■□□□□ 0.01
LIG1-201ENST00000263274 CKAP2LQ8IYA6 745 aa15.11■□□□□ 0.01
LIG1-201ENST00000263274 REREQ9P2R6 1566 aa15.1■□□□□ 0.01
LIG1-201ENST00000263274 HSP90B1P14625 803 aaKnown RBP15.1■□□□□ 0.01
LIG1-201ENST00000263274 CEBPZQ03701 1054 aaKnown RBP15.1■□□□□ 0.01
LIG1-201ENST00000263274 PHF8Q9UPP1 1060 aa15.1■□□□□ 0.01
LIG1-201ENST00000263274 USP31Q70CQ4 1352 aa15.1■□□□□ 0.01
LIG1-201ENST00000263274 RBM8AQ9Y5S9 174 aaKnown RBP15.1■□□□□ 0.01
LIG1-201ENST00000263274 NDUFB9Q9Y6M9 179 aa15.1■□□□□ 0.01
LIG1-201ENST00000263274 PLEKHO1Q53GL0 409 aaPredicted RBP15.09■□□□□ 0.01
LIG1-201ENST00000263274 ADAMTS13Q76LX8 1427 aa15.09■□□□□ 0.01
LIG1-201ENST00000263274 EDC3Q96F86 508 aaKnown RBP15.09■□□□□ 0.01
LIG1-201ENST00000263274 DBF4Q9UBU7 674 aaPredicted RBP15.09■□□□□ 0.01
LIG1-201ENST00000263274 SLC39A6Q13433 755 aa15.09■□□□□ 0.01
LIG1-201ENST00000263274 THEMISQ8N1K5 641 aaPredicted RBP15.08■□□□□ 0.01
LIG1-201ENST00000263274 NMIQ13287 307 aaPredicted RBP15.08■□□□□ 0
LIG1-201ENST00000263274 ME3Q16798 604 aa15.08■□□□□ 0
LIG1-201ENST00000263274 SASS6Q6UVJ0 657 aa15.08■□□□□ 0
LIG1-201ENST00000263274 PRDM4Q9UKN5 801 aa15.08■□□□□ 0
LIG1-201ENST00000263274 POLA2Q14181 598 aa15.08■□□□□ 0
LIG1-201ENST00000263274 ITSN1Q15811 1721 aa15.08■□□□□ 0
LIG1-201ENST00000263274 SPATA31D1Q6ZQQ2 1576 aa15.07■□□□□ 0
LIG1-201ENST00000263274 KDRP35968 1356 aa15.07■□□□□ 0
LIG1-201ENST00000263274 BLOC1S2Q6QNY1 142 aa15.07■□□□□ 0
LIG1-201ENST00000263274 FAM184AQ8NB25 1140 aa15.07■□□□□ 0
LIG1-201ENST00000263274 DDX11Q96FC9 970 aa15.07■□□□□ 0
LIG1-201ENST00000263274 DNAJC2Q99543 621 aaKnown RBP15.07■□□□□ 0
LIG1-201ENST00000263274 HYPKQ9NX55 129 aa15.07■□□□□ 0
LIG1-201ENST00000263274 NOLC1Q14978 699 aaKnown RBP eCLIP15.07■□□□□ 08e-7■■■□□ 15.4
LIG1-201ENST00000263274 BICD2Q8TD16 824 aa15.07■□□□□ 0
LIG1-201ENST00000263274 FBXW7Q969H0 707 aa15.07■□□□□ 0
LIG1-201ENST00000263274 PTPRUQ92729 1446 aa15.07■□□□□ 0
LIG1-201ENST00000263274 MCM5P33992 734 aa15.07■□□□□ 0
LIG1-201ENST00000263274 CREB3L3Q68CJ9 461 aa15.06■□□□□ 0
LIG1-201ENST00000263274 TTC14Q96N46 770 aa15.06■□□□□ 0
LIG1-201ENST00000263274 TBX22Q9Y458 520 aa15.06■□□□□ 0
LIG1-201ENST00000263274 RPAP1Q9BWH6 1393 aaPredicted RBP15.06■□□□□ 0
LIG1-201ENST00000263274 SSH2Q76I76 1423 aa15.06■□□□□ 0
LIG1-201ENST00000263274 LRRC2Q9BYS8 371 aa15.06■□□□□ 0
LIG1-201ENST00000263274 BICC1Q9H694 974 aaKnown RBP15.06■□□□□ 0
LIG1-201ENST00000263274 TLR7Q9NYK1 1049 aaKnown RBP15.06■□□□□ 0
LIG1-201ENST00000263274 AOX1Q06278 1338 aa15.06■□□□□ 0
LIG1-201ENST00000263274 LETM1O95202 739 aaPredicted RBP15.05■□□□□ 0
LIG1-201ENST00000263274 ZC3H6P61129 1189 aaKnown RBP15.05■□□□□ 0
LIG1-201ENST00000263274 KRT85P78386 507 aa15.05■□□□□ 0
LIG1-201ENST00000263274 EAF2Q96CJ1 260 aaPredicted RBP15.05■□□□□ 0
LIG1-201ENST00000263274 EVI5LQ96CN4 794 aa15.05■□□□□ 0
LIG1-201ENST00000263274 MTMR6Q9Y217 621 aa15.05■□□□□ 0
LIG1-201ENST00000263274 TECPR2O15040 1411 aa15.05■□□□□ 0
LIG1-201ENST00000263274 SUCLG2Q96I99 432 aa15.05■□□□□ -0
LIG1-201ENST00000263274 H3BQV1 296 aa15.05■□□□□ -0
LIG1-201ENST00000263274 COL9A3Q14050 684 aaPredicted RBP15.05■□□□□ -0
LIG1-201ENST00000263274 IFFO2Q5TF58 517 aa15.05■□□□□ -0
LIG1-201ENST00000263274 CHMP4AQ9BY43 222 aa15.05■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms