RNA–Protein interactions for RNA: ENST00000261415.11

COL4A3BP-201, Transcript of collagen type IV alpha 3 binding protein, humanhuman

TSL 1 (best) BASIC

Gene COL4A3BP, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BP-201ENST00000261415 NUP188Q5SRE5 1749 aa23.48■■□□□ 1.35
COL4A3BP-201ENST00000261415 INTS3Q68E01 1043 aaKnown RBP23.48■■□□□ 1.35
COL4A3BP-201ENST00000261415 LRP10Q7Z4F1 713 aa23.48■■□□□ 1.35
COL4A3BP-201ENST00000261415 MYH14Q7Z406 1995 aaKnown RBP23.48■■□□□ 1.35
COL4A3BP-201ENST00000261415 POTEAQ6S8J7 498 aa23.48■■□□□ 1.35
COL4A3BP-201ENST00000261415 TAF1LQ8IZX4 1826 aa23.48■■□□□ 1.35
COL4A3BP-201ENST00000261415 RREB1Q92766 1687 aa23.48■■□□□ 1.35
COL4A3BP-201ENST00000261415 LOC102724428A0A0B4J2F2 783 aa23.47■■□□□ 1.35
COL4A3BP-201ENST00000261415 NBPF26B4DH59 902 aa23.47■■□□□ 1.35
COL4A3BP-201ENST00000261415 A1BGP04217 495 aa23.47■■□□□ 1.35
COL4A3BP-201ENST00000261415 SIK1P57059 783 aa23.47■■□□□ 1.35
COL4A3BP-201ENST00000261415 NBPF14Q5TI25 921 aa23.47■■□□□ 1.35
COL4A3BP-201ENST00000261415 NBPF10Q6P3W6 841 aaKnown RBP23.47■■□□□ 1.35
COL4A3BP-201ENST00000261415 SLC4A10Q6U841 1118 aa23.47■■□□□ 1.35
COL4A3BP-201ENST00000261415 NBPF15Q8N660 670 aa23.47■■□□□ 1.35
COL4A3BP-201ENST00000261415 XRCC6P12956 609 aaKnown RBP eCLIP23.46■■□□□ 1.35
COL4A3BP-201ENST00000261415 ADCY9O60503 1353 aa23.46■■□□□ 1.35
COL4A3BP-201ENST00000261415 AFDNP55196 1824 aaKnown RBP23.46■■□□□ 1.35
COL4A3BP-201ENST00000261415 STARD3NLO95772 234 aa23.45■■□□□ 1.35
COL4A3BP-201ENST00000261415 FAM196AQ6ZSG2 479 aa23.45■■□□□ 1.35
COL4A3BP-201ENST00000261415 FSD2A1L4K1 749 aa23.44■■□□□ 1.34
COL4A3BP-201ENST00000261415 PI4KAP2A4QPH2 592 aa23.44■■□□□ 1.34
COL4A3BP-201ENST00000261415 PI4KAP1Q8N8J0 262 aa23.44■■□□□ 1.34
COL4A3BP-201ENST00000261415 CYP19A1P11511 503 aaPredicted RBP23.44■■□□□ 1.34
COL4A3BP-201ENST00000261415 AIMP1Q12904 312 aaKnown RBP23.44■■□□□ 1.34
COL4A3BP-201ENST00000261415 XAGE3Q8WTP9 111 aa23.44■■□□□ 1.34
COL4A3BP-201ENST00000261415 ATP6V1AP38606 617 aa23.43■■□□□ 1.34
COL4A3BP-201ENST00000261415 CCT4P50991 539 aaKnown RBP23.43■■□□□ 1.34
COL4A3BP-201ENST00000261415 COPS6Q7L5N1 327 aa23.43■■□□□ 1.34
COL4A3BP-201ENST00000261415 C8orf34Q49A92 452 aa23.43■■□□□ 1.34
COL4A3BP-201ENST00000261415 DNAAF4Q8WXU2 420 aa23.43■■□□□ 1.34
COL4A3BP-201ENST00000261415 ZBTB7BO15156 539 aaPredicted RBP23.42■■□□□ 1.34
COL4A3BP-201ENST00000261415 DDX58O95786 925 aaKnown RBP23.42■■□□□ 1.34
COL4A3BP-201ENST00000261415 KSR2Q6VAB6 950 aa23.42■■□□□ 1.34
COL4A3BP-201ENST00000261415 BCL11BQ9C0K0 894 aaPredicted RBP23.42■■□□□ 1.34
COL4A3BP-201ENST00000261415 ZBTB40Q9NUA8 1239 aa23.42■■□□□ 1.34
COL4A3BP-201ENST00000261415 MAP3K2Q9Y2U5 619 aa23.41■■□□□ 1.34
COL4A3BP-201ENST00000261415 ITPK1Q13572 414 aa23.4■■□□□ 1.34
COL4A3BP-201ENST00000261415 CENPQQ7L2Z9 268 aaPredicted RBP23.4■■□□□ 1.34
COL4A3BP-201ENST00000261415 CHMP4BQ9H444 224 aaKnown RBP23.4■■□□□ 1.34
COL4A3BP-201ENST00000261415 ATP10DQ9P241 1426 aa23.4■■□□□ 1.34
COL4A3BP-201ENST00000261415 BECN1Q14457 450 aa23.39■■□□□ 1.33
COL4A3BP-201ENST00000261415 PDE4CQ08493 712 aa23.38■■□□□ 1.33
COL4A3BP-201ENST00000261415 NUP98P52948 1817 aa23.38■■□□□ 1.33
COL4A3BP-201ENST00000261415 ESPNB1AK53 854 aa23.38■■□□□ 1.33
COL4A3BP-201ENST00000261415 RIC3Q7Z5B4 369 aa23.38■■□□□ 1.33
COL4A3BP-201ENST00000261415 ZBTB1Q9Y2K1 713 aa23.38■■□□□ 1.33
COL4A3BP-201ENST00000261415 ANKRD36CQ5JPF3 1778 aa23.37■■□□□ 1.33
COL4A3BP-201ENST00000261415 TNS1Q9HBL0 1735 aaKnown RBP23.37■■□□□ 1.33
COL4A3BP-201ENST00000261415 ANKRD13DQ6ZTN6 518 aa23.37■■□□□ 1.33
COL4A3BP-201ENST00000261415 KDM2BQ8NHM5 1336 aa23.37■■□□□ 1.33
COL4A3BP-201ENST00000261415 TRIM37O94972 964 aa23.36■■□□□ 1.33
COL4A3BP-201ENST00000261415 BEND3Q5T5X7 828 aa23.36■■□□□ 1.33
COL4A3BP-201ENST00000261415 PCDHB15Q9Y5E8 787 aa23.36■■□□□ 1.33
COL4A3BP-201ENST00000261415 MRE11P49959 708 aa23.36■■□□□ 1.33
COL4A3BP-201ENST00000261415 MAP7D2Q96T17 732 aa23.36■■□□□ 1.33
COL4A3BP-201ENST00000261415 SRCIN1Q9C0H9 1055 aa23.36■■□□□ 1.33
COL4A3BP-201ENST00000261415 CRKLP46109 303 aaKnown RBP23.35■■□□□ 1.33
COL4A3BP-201ENST00000261415 TTLL7Q6ZT98 887 aa23.35■■□□□ 1.33
COL4A3BP-201ENST00000261415 ZNF330Q9Y3S2 320 aaPredicted RBP23.35■■□□□ 1.33
COL4A3BP-201ENST00000261415 PLBD2Q8NHP8 589 aa23.35■■□□□ 1.33
COL4A3BP-201ENST00000261415 MEIS3Q99687 375 aa23.35■■□□□ 1.33
COL4A3BP-201ENST00000261415 CCDC87Q9NVE4 849 aa23.35■■□□□ 1.33
COL4A3BP-201ENST00000261415 KCNQ4P56696 695 aa23.34■■□□□ 1.33
COL4A3BP-201ENST00000261415 INTS5Q6P9B9 1019 aaKnown RBP23.34■■□□□ 1.33
COL4A3BP-201ENST00000261415 ILDR1Q86SU0 546 aaPredicted RBP23.34■■□□□ 1.33
COL4A3BP-201ENST00000261415 LINC00116Q8NCU8 138 aa23.33■■□□□ 1.33
COL4A3BP-201ENST00000261415 C1orf115Q9H7X2 142 aa23.33■■□□□ 1.33
COL4A3BP-201ENST00000261415 ISY1Q9ULR0 285 aaKnown RBP23.33■■□□□ 1.33
COL4A3BP-201ENST00000261415 C4BP0C0L5 1744 aa23.33■■□□□ 1.33
COL4A3BP-201ENST00000261415 IL6STP40189 918 aaPredicted RBP23.33■■□□□ 1.32
COL4A3BP-201ENST00000261415 CCNL1Q9UK58 526 aaPredicted RBP23.33■■□□□ 1.32
COL4A3BP-201ENST00000261415 METTL22Q9BUU2 404 aaPredicted RBP23.32■■□□□ 1.32
COL4A3BP-201ENST00000261415 LINS1Q8NG48 757 aa23.31■■□□□ 1.32
COL4A3BP-201ENST00000261415 BCORQ6W2J9 1755 aa23.31■■□□□ 1.32
COL4A3BP-201ENST00000261415 ALDH1L1O75891 902 aa23.3■■□□□ 1.32
COL4A3BP-201ENST00000261415 NEXNQ0ZGT2 675 aa23.3■■□□□ 1.32
COL4A3BP-201ENST00000261415 CWF19L2Q2TBE0 894 aaKnown RBP23.3■■□□□ 1.32
COL4A3BP-201ENST00000261415 SKAP1Q86WV1 359 aa23.3■■□□□ 1.32
COL4A3BP-201ENST00000261415 MYD88Q99836 296 aa23.3■■□□□ 1.32
COL4A3BP-201ENST00000261415 USP44Q9H0E7 712 aa23.3■■□□□ 1.32
COL4A3BP-201ENST00000261415 ZBTB3Q9H5J0 574 aa23.3■■□□□ 1.32
COL4A3BP-201ENST00000261415 RGPD3A6NKT7 1758 aaPredicted RBP23.29■■□□□ 1.32
COL4A3BP-201ENST00000261415 RGPD4Q7Z3J3 1758 aa23.29■■□□□ 1.32
COL4A3BP-201ENST00000261415 CNTNAP4Q9C0A0 1308 aa23.29■■□□□ 1.32
COL4A3BP-201ENST00000261415 IGKV5-2P06315 115 aa23.29■■□□□ 1.32
COL4A3BP-201ENST00000261415 EIF5P55010 431 aaKnown RBP23.29■■□□□ 1.32
COL4A3BP-201ENST00000261415 IGHDP01880 384 aa23.29■■□□□ 1.32
COL4A3BP-201ENST00000261415 GNAI3P08754 354 aa23.29■■□□□ 1.32
COL4A3BP-201ENST00000261415 RGS3P49796 1198 aa23.29■■□□□ 1.32
COL4A3BP-201ENST00000261415 KIF6Q6ZMV9 814 aa23.29■■□□□ 1.32
COL4A3BP-201ENST00000261415 PANK2Q9BZ23 570 aa23.28■■□□□ 1.32
COL4A3BP-201ENST00000261415 UBR3Q6ZT12 1888 aa23.27■■□□□ 1.32
COL4A3BP-201ENST00000261415 IBTKQ9P2D0 1353 aaPredicted RBP23.27■■□□□ 1.32
COL4A3BP-201ENST00000261415 MAP3K15Q6ZN16 1313 aa23.27■■□□□ 1.32
COL4A3BP-201ENST00000261415 NEURL1BA8MQ27 555 aa23.26■■□□□ 1.31
COL4A3BP-201ENST00000261415 TERF1P54274 439 aa23.26■■□□□ 1.31
COL4A3BP-201ENST00000261415 C4AP0C0L4 1744 aa23.26■■□□□ 1.31
COL4A3BP-201ENST00000261415 ARXQ96QS3 562 aa23.26■■□□□ 1.31
COL4A3BP-201ENST00000261415 UBTFL1P0CB47 393 aaPredicted RBP23.25■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 204.8 ms