RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 COL15A1P39059 1388 aa10.92□□□□□ -0.66
VPS4B-201ENST00000238497 SOS1Q07889 1333 aaPredicted RBP10.92□□□□□ -0.66
VPS4B-201ENST00000238497 ZKSCAN2Q63HK3 967 aa10.92□□□□□ -0.66
VPS4B-201ENST00000238497 ZNF526Q8TF50 670 aaPredicted RBP10.92□□□□□ -0.66
VPS4B-201ENST00000238497 C1orf115Q9H7X2 142 aa10.92□□□□□ -0.66
VPS4B-201ENST00000238497 BACH2Q9BYV9 841 aa10.91□□□□□ -0.66
VPS4B-201ENST00000238497 NARFQ9UHQ1 456 aa10.91□□□□□ -0.66
VPS4B-201ENST00000238497 A0A087WZG4 1122 aa10.91□□□□□ -0.66
VPS4B-201ENST00000238497 HTATSF1O43719 755 aaKnown RBP10.91□□□□□ -0.66
VPS4B-201ENST00000238497 MYL6BP14649 208 aa10.91□□□□□ -0.66
VPS4B-201ENST00000238497 WDR63Q8IWG1 891 aa10.91□□□□□ -0.66
VPS4B-201ENST00000238497 DZIP1LQ8IYY4 767 aaKnown RBP10.91□□□□□ -0.66
VPS4B-201ENST00000238497 SPRYD3Q8NCJ5 442 aa10.91□□□□□ -0.66
VPS4B-201ENST00000238497 TUBGCP6Q96RT7 1819 aa10.91□□□□□ -0.66
VPS4B-201ENST00000238497 DPEP1P16444 411 aa10.91□□□□□ -0.66
VPS4B-201ENST00000238497 NFIXQ14938 502 aa10.91□□□□□ -0.66
VPS4B-201ENST00000238497 DZIP3Q86Y13 1208 aaKnown RBP10.91□□□□□ -0.66
VPS4B-201ENST00000238497 DDR1Q08345 913 aa10.9□□□□□ -0.66
VPS4B-201ENST00000238497 PLEKHF1Q96S99 279 aa10.9□□□□□ -0.66
VPS4B-201ENST00000238497 TRIM35Q9UPQ4 493 aa10.9□□□□□ -0.66
VPS4B-201ENST00000238497 PCDHB15Q9Y5E8 787 aa10.9□□□□□ -0.66
VPS4B-201ENST00000238497 TAF1LQ8IZX4 1826 aa10.9□□□□□ -0.66
VPS4B-201ENST00000238497 CEMIPQ8WUJ3 1361 aa10.9□□□□□ -0.66
VPS4B-201ENST00000238497 GTF2E1P29083 439 aaPredicted RBP10.9□□□□□ -0.66
VPS4B-201ENST00000238497 CHRNA5P30532 468 aa10.9□□□□□ -0.66
VPS4B-201ENST00000238497 LMOD3Q0VAK6 560 aa10.9□□□□□ -0.66
VPS4B-201ENST00000238497 ARHGAP27Q6ZUM4 889 aa10.9□□□□□ -0.66
VPS4B-201ENST00000238497 ZNF219Q9P2Y4 722 aaPredicted RBP10.9□□□□□ -0.66
VPS4B-201ENST00000238497 SERPINB2P05120 415 aa10.89□□□□□ -0.67
VPS4B-201ENST00000238497 KRT24Q2M2I5 525 aa10.89□□□□□ -0.67
VPS4B-201ENST00000238497 MYH14Q7Z406 1995 aaKnown RBP10.89□□□□□ -0.67
VPS4B-201ENST00000238497 SCN11AQ9UI33 1791 aa10.89□□□□□ -0.67
VPS4B-201ENST00000238497 EIF5P55010 431 aaKnown RBP10.89□□□□□ -0.67
VPS4B-201ENST00000238497 IL6STP40189 918 aaPredicted RBP10.89□□□□□ -0.67
VPS4B-201ENST00000238497 TRMT2AQ8IZ69 625 aaKnown RBP10.89□□□□□ -0.67
VPS4B-201ENST00000238497 TSPYL6Q8N831 410 aa10.89□□□□□ -0.67
VPS4B-201ENST00000238497 SETDB2Q96T68 719 aa10.89□□□□□ -0.67
VPS4B-201ENST00000238497 ZNF622Q969S3 477 aaKnown RBP eCLIP10.88□□□□□ -0.67
VPS4B-201ENST00000238497 UBR3Q6ZT12 1888 aa10.88□□□□□ -0.67
VPS4B-201ENST00000238497 TBC1D9BQ66K14 1250 aa10.87□□□□□ -0.67
VPS4B-201ENST00000238497 ANXA1P04083 346 aa10.87□□□□□ -0.67
VPS4B-201ENST00000238497 TRIM27P14373 513 aa10.87□□□□□ -0.67
VPS4B-201ENST00000238497 PDE3AQ14432 1141 aa10.87□□□□□ -0.67
VPS4B-201ENST00000238497 ZNF428Q96B54 188 aa10.87□□□□□ -0.67
VPS4B-201ENST00000238497 POLRMTO00411 1230 aaKnown RBP10.87□□□□□ -0.67
VPS4B-201ENST00000238497 TMEM57Q8N5G2 664 aa10.87□□□□□ -0.67
VPS4B-201ENST00000238497 ZNF784Q8NCA9 323 aaPredicted RBP10.87□□□□□ -0.67
VPS4B-201ENST00000238497 TGFB2P61812 414 aa10.86□□□□□ -0.67
VPS4B-201ENST00000238497 AIMP1Q12904 312 aaKnown RBP10.86□□□□□ -0.67
VPS4B-201ENST00000238497 SLC4A10Q6U841 1118 aa10.86□□□□□ -0.67
VPS4B-201ENST00000238497 PIM2Q9P1W9 311 aa10.86□□□□□ -0.67
VPS4B-201ENST00000238497 NBPF5PQ86XG9 351 aaPredicted RBP10.86□□□□□ -0.67
VPS4B-201ENST00000238497 RWDD1Q9H446 243 aaPredicted RBP10.86□□□□□ -0.67
VPS4B-201ENST00000238497 ZBTB3Q9H5J0 574 aa10.86□□□□□ -0.67
VPS4B-201ENST00000238497 BCL2L12Q9HB09 334 aa10.86□□□□□ -0.67
VPS4B-201ENST00000238497 PDZRN3Q9UPQ7 1066 aa10.86□□□□□ -0.67
VPS4B-201ENST00000238497 ZNF652Q9Y2D9 606 aa10.86□□□□□ -0.67
VPS4B-201ENST00000238497 MRC1P22897 1456 aa10.86□□□□□ -0.67
VPS4B-201ENST00000238497 KCPQ6ZWJ8 1503 aa10.86□□□□□ -0.67
VPS4B-201ENST00000238497 EIF4A1P60842 406 aaKnown RBP10.86□□□□□ -0.67
VPS4B-201ENST00000238497 FAM161AQ3B820 660 aa10.86□□□□□ -0.67
VPS4B-201ENST00000238497 DALRD3Q5D0E6 543 aaKnown RBP10.86□□□□□ -0.67
VPS4B-201ENST00000238497 C2CD5Q86YS7 1000 aa10.86□□□□□ -0.67
VPS4B-201ENST00000238497 NIP7Q9Y221 180 aaKnown RBP eCLIP10.86□□□□□ -0.67
VPS4B-201ENST00000238497 GIGYF1O75420 1035 aaPredicted RBP10.85□□□□□ -0.67
VPS4B-201ENST00000238497 GPTP24298 496 aa10.85□□□□□ -0.67
VPS4B-201ENST00000238497 TM4SF1P30408 202 aa10.85□□□□□ -0.67
VPS4B-201ENST00000238497 KIF6Q6ZMV9 814 aa10.85□□□□□ -0.67
VPS4B-201ENST00000238497 CNBD1Q8NA66 436 aa10.85□□□□□ -0.67
VPS4B-201ENST00000238497 LNPKQ9C0E8 428 aa10.85□□□□□ -0.67
VPS4B-201ENST00000238497 NBPF26B4DH59 902 aa10.85□□□□□ -0.67
VPS4B-201ENST00000238497 NBPF10Q6P3W6 841 aaKnown RBP10.85□□□□□ -0.67
VPS4B-201ENST00000238497 NBPF15Q8N660 670 aa10.85□□□□□ -0.67
VPS4B-201ENST00000238497 CICQ96RK0 1608 aaPredicted RBP10.85□□□□□ -0.67
VPS4B-201ENST00000238497 H0YIN7 160 aa10.84□□□□□ -0.67
VPS4B-201ENST00000238497 IPO8O15397 1037 aaKnown RBP10.84□□□□□ -0.67
VPS4B-201ENST00000238497 MS4A1P11836 297 aa10.84□□□□□ -0.67
VPS4B-201ENST00000238497 TWISTNBQ3B726 338 aaPredicted RBP10.84□□□□□ -0.67
VPS4B-201ENST00000238497 ATF7IPQ6VMQ6 1270 aa10.84□□□□□ -0.67
VPS4B-201ENST00000238497 MVPQ14764 893 aaKnown RBP10.84□□□□□ -0.67
VPS4B-201ENST00000238497 CAMTA2O94983 1202 aa10.83□□□□□ -0.68
VPS4B-201ENST00000238497 ST5P78524 1137 aa10.83□□□□□ -0.68
VPS4B-201ENST00000238497 C8orf58Q8NAV2 365 aa10.83□□□□□ -0.68
VPS4B-201ENST00000238497 MBIPQ9NS73 344 aa10.83□□□□□ -0.68
VPS4B-201ENST00000238497 QSER1Q2KHR3 1735 aa10.83□□□□□ -0.68
VPS4B-201ENST00000238497 TTLL7Q6ZT98 887 aa10.83□□□□□ -0.68
VPS4B-201ENST00000238497 SLKQ9H2G2 1235 aaPredicted RBP10.83□□□□□ -0.68
VPS4B-201ENST00000238497 SEC24BO95487 1268 aa10.83□□□□□ -0.68
VPS4B-201ENST00000238497 MFAP1P55081 439 aaKnown RBP10.83□□□□□ -0.68
VPS4B-201ENST00000238497 HLFQ16534 295 aa10.82□□□□□ -0.68
VPS4B-201ENST00000238497 ANKRD45Q5TZF3 282 aa10.82□□□□□ -0.68
VPS4B-201ENST00000238497 GPBP1L1Q9HC44 474 aaPredicted RBP10.82□□□□□ -0.68
VPS4B-201ENST00000238497 KDM2BQ8NHM5 1336 aa10.82□□□□□ -0.68
VPS4B-201ENST00000238497 PRR5LQ6MZQ0 368 aa10.82□□□□□ -0.68
VPS4B-201ENST00000238497 GNAI1P63096 354 aa10.81□□□□□ -0.68
VPS4B-201ENST00000238497 HDGFL1Q5TGJ6 251 aa10.81□□□□□ -0.68
VPS4B-201ENST00000238497 UPF2Q9HAU5 1272 aaKnown RBP10.81□□□□□ -0.68
VPS4B-201ENST00000238497 TJP1Q07157 1748 aa10.81□□□□□ -0.68
VPS4B-201ENST00000238497 TPTE2Q6XPS3 522 aa10.81□□□□□ -0.68
VPS4B-201ENST00000238497 TTLL6Q8N841 843 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms