RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 IFIT2P09913 472 aaKnown RBP22.53■■□□□ 1.2
CPSF3-201ENST00000238112 CASTP20810 708 aaKnown RBP22.53■■□□□ 1.2
CPSF3-201ENST00000238112 KSR2Q6VAB6 950 aa22.53■■□□□ 1.2
CPSF3-201ENST00000238112 RUFY3Q7L099 469 aa22.53■■□□□ 1.2
CPSF3-201ENST00000238112 SETD1BQ9UPS6 1966 aaKnown RBP22.52■■□□□ 1.2
CPSF3-201ENST00000238112 SMC3Q9UQE7 1217 aa22.52■■□□□ 1.2
CPSF3-201ENST00000238112 NCAPD2Q15021 1401 aa22.52■■□□□ 1.2
CPSF3-201ENST00000238112 ZSCAN22P10073 491 aaPredicted RBP22.52■■□□□ 1.2
CPSF3-201ENST00000238112 PRKCSHP14314 528 aaPredicted RBP22.52■■□□□ 1.2
CPSF3-201ENST00000238112 TMEM87AQ8NBN3 555 aa22.52■■□□□ 1.2
CPSF3-201ENST00000238112 CCDC39Q9UFE4 941 aa22.52■■□□□ 1.2
CPSF3-201ENST00000238112 CRYBG1Q9Y4K1 1723 aa22.51■■□□□ 1.19
CPSF3-201ENST00000238112 GIGYF1O75420 1035 aaPredicted RBP22.51■■□□□ 1.19
CPSF3-201ENST00000238112 STX6O43752 255 aa22.51■■□□□ 1.19
CPSF3-201ENST00000238112 LARP6Q9BRS8 491 aaKnown RBP22.51■■□□□ 1.19
CPSF3-201ENST00000238112 ANKLE2Q86XL3 938 aa22.5■■□□□ 1.19
CPSF3-201ENST00000238112 ZKSCAN5Q9Y2L8 839 aa22.5■■□□□ 1.19
CPSF3-201ENST00000238112 ZNF500O60304 480 aaPredicted RBP22.49■■□□□ 1.19
CPSF3-201ENST00000238112 PROSER3Q2NL68 480 aa22.49■■□□□ 1.19
CPSF3-201ENST00000238112 PA2G4Q9UQ80 394 aaKnown RBP22.49■■□□□ 1.19
CPSF3-201ENST00000238112 ATP6V1DQ9Y5K8 247 aa22.49■■□□□ 1.19
CPSF3-201ENST00000238112 SYT1P21579 422 aa22.49■■□□□ 1.19
CPSF3-201ENST00000238112 MCM5P33992 734 aa22.49■■□□□ 1.19
CPSF3-201ENST00000238112 CWF19L2Q2TBE0 894 aaKnown RBP22.49■■□□□ 1.19
CPSF3-201ENST00000238112 PXDNQ92626 1479 aa22.49■■□□□ 1.19
CPSF3-201ENST00000238112 OVOS2A0A0G2JMS6 1433 aa22.49■■□□□ 1.19
CPSF3-201ENST00000238112 RGPD2P0DJD1 1756 aa22.48■■□□□ 1.19
CPSF3-201ENST00000238112 AACSQ86V21 672 aa22.48■■□□□ 1.19
CPSF3-201ENST00000238112 EVI5LQ96CN4 794 aa22.48■■□□□ 1.19
CPSF3-201ENST00000238112 JAKMIP1Q96N16 626 aaKnown RBP22.48■■□□□ 1.19
CPSF3-201ENST00000238112 HYPKQ9NX55 129 aa22.48■■□□□ 1.19
CPSF3-201ENST00000238112 EIF2AK3Q9NZJ5 1116 aaKnown RBP22.48■■□□□ 1.19
CPSF3-201ENST00000238112 CNPY2Q9Y2B0 182 aa22.48■■□□□ 1.19
CPSF3-201ENST00000238112 PHRF1Q9P1Y6 1649 aaKnown RBP22.48■■□□□ 1.19
CPSF3-201ENST00000238112 GCP02774 474 aa22.48■■□□□ 1.19
CPSF3-201ENST00000238112 CPA1P15085 419 aa22.48■■□□□ 1.19
CPSF3-201ENST00000238112 PTH1RQ03431 593 aa22.48■■□□□ 1.19
CPSF3-201ENST00000238112 PRPF40BQ6NWY9 871 aaKnown RBP22.48■■□□□ 1.19
CPSF3-201ENST00000238112 PDRG1Q9NUG6 133 aa22.48■■□□□ 1.19
CPSF3-201ENST00000238112 HSP90AA2PQ14568 343 aaPredicted RBP22.47■■□□□ 1.19
CPSF3-201ENST00000238112 VPS53Q5VIR6 699 aa22.47■■□□□ 1.19
CPSF3-201ENST00000238112 CHD2O14647 1828 aaKnown RBP22.47■■□□□ 1.19
CPSF3-201ENST00000238112 RRP9O43818 475 aaKnown RBP22.47■■□□□ 1.19
CPSF3-201ENST00000238112 DDX58O95786 925 aaKnown RBP22.47■■□□□ 1.19
CPSF3-201ENST00000238112 CCDC183Q5T5S1 534 aa22.47■■□□□ 1.19
CPSF3-201ENST00000238112 ARHGEF25Q86VW2 580 aa22.47■■□□□ 1.19
CPSF3-201ENST00000238112 ANKRD24Q8TF21 1146 aa22.47■■□□□ 1.19
CPSF3-201ENST00000238112 CYP46A1Q9Y6A2 500 aa22.47■■□□□ 1.19
CPSF3-201ENST00000238112 F13A1P00488 732 aa22.46■■□□□ 1.19
CPSF3-201ENST00000238112 FAM184AQ8NB25 1140 aa22.46■■□□□ 1.19
CPSF3-201ENST00000238112 LINS1Q8NG48 757 aa22.46■■□□□ 1.19
CPSF3-201ENST00000238112 GRM8O00222 908 aa22.46■■□□□ 1.19
CPSF3-201ENST00000238112 ZKSCAN1P17029 563 aaPredicted RBP22.46■■□□□ 1.19
CPSF3-201ENST00000238112 ZSCAN31Q96LW9 406 aaPredicted RBP22.46■■□□□ 1.19
CPSF3-201ENST00000238112 TM6SF1Q9BZW5 370 aa22.46■■□□□ 1.19
CPSF3-201ENST00000238112 SH2B1Q9NRF2 756 aaPredicted RBP22.46■■□□□ 1.19
CPSF3-201ENST00000238112 HEG1Q9ULI3 1381 aa22.46■■□□□ 1.19
CPSF3-201ENST00000238112 UBE2HP62256 183 aa22.45■■□□□ 1.18
CPSF3-201ENST00000238112 CCDC83Q8IWF9 413 aa22.45■■□□□ 1.18
CPSF3-201ENST00000238112 PRAMEF22A3QJZ6 481 aa22.45■■□□□ 1.18
CPSF3-201ENST00000238112 LETM1O95202 739 aaPredicted RBP22.45■■□□□ 1.18
CPSF3-201ENST00000238112 PTMAP06454 111 aaKnown RBP22.45■■□□□ 1.18
CPSF3-201ENST00000238112 G3BP1Q13283 466 aaKnown RBP eCLIP22.45■■□□□ 1.18
CPSF3-201ENST00000238112 ADCK5Q3MIX3 580 aa22.45■■□□□ 1.18
CPSF3-201ENST00000238112 UBE2Q2Q8WVN8 375 aa22.45■■□□□ 1.18
CPSF3-201ENST00000238112 ZSWIM6Q9HCJ5 1215 aa22.45■■□□□ 1.18
CPSF3-201ENST00000238112 HIP1O00291 1037 aa22.44■■□□□ 1.18
CPSF3-201ENST00000238112 LARGE1O95461 756 aa22.44■■□□□ 1.18
CPSF3-201ENST00000238112 LMOD2Q6P5Q4 547 aa22.44■■□□□ 1.18
CPSF3-201ENST00000238112 SUCLG2Q96I99 432 aa22.44■■□□□ 1.18
CPSF3-201ENST00000238112 CCDC171Q6TFL3 1326 aa22.44■■□□□ 1.18
CPSF3-201ENST00000238112 GJB2P29033 226 aa22.43■■□□□ 1.18
CPSF3-201ENST00000238112 KCNJ4P48050 445 aa22.43■■□□□ 1.18
CPSF3-201ENST00000238112 XPCQ01831 940 aaPredicted RBP22.43■■□□□ 1.18
CPSF3-201ENST00000238112 CSPP1Q1MSJ5 1256 aa22.43■■□□□ 1.18
CPSF3-201ENST00000238112 KCNB2Q92953 911 aa22.43■■□□□ 1.18
CPSF3-201ENST00000238112 FIBPO43427 364 aa22.43■■□□□ 1.18
CPSF3-201ENST00000238112 AIMP1Q12904 312 aaKnown RBP22.43■■□□□ 1.18
CPSF3-201ENST00000238112 BICC1Q9H694 974 aaKnown RBP22.43■■□□□ 1.18
CPSF3-201ENST00000238112 TERF1P54274 439 aa22.42■■□□□ 1.18
CPSF3-201ENST00000238112 TPRNQ4KMQ1 711 aa22.42■■□□□ 1.18
CPSF3-201ENST00000238112 DDX21Q9NR30 783 aaKnown RBP eCLIP22.42■■□□□ 1.18
CPSF3-201ENST00000238112 NECTIN1Q15223 517 aa22.42■■□□□ 1.18
CPSF3-201ENST00000238112 UVSSAQ2YD98 709 aa22.42■■□□□ 1.18
CPSF3-201ENST00000238112 UTYO14607 1347 aa22.42■■□□□ 1.18
CPSF3-201ENST00000238112 RBM8AQ9Y5S9 174 aaKnown RBP22.41■■□□□ 1.18
CPSF3-201ENST00000238112 SASH1O94885 1247 aa22.41■■□□□ 1.18
CPSF3-201ENST00000238112 R3HCC1Q9Y3T6 440 aaKnown RBP22.41■■□□□ 1.18
CPSF3-201ENST00000238112 EAF2Q96CJ1 260 aaPredicted RBP22.4■■□□□ 1.18
CPSF3-201ENST00000238112 ORAI2Q96SN7 254 aa22.4■■□□□ 1.18
CPSF3-201ENST00000238112 CCDC8Q9H0W5 538 aaPredicted RBP22.4■■□□□ 1.18
CPSF3-201ENST00000238112 SLIT3O75094 1523 aa22.4■■□□□ 1.18
CPSF3-201ENST00000238112 CREB3L3Q68CJ9 461 aa22.4■■□□□ 1.18
CPSF3-201ENST00000238112 KAZALD1Q96I82 304 aa22.4■■□□□ 1.18
CPSF3-201ENST00000238112 FAM227BQ96M60 508 aa22.4■■□□□ 1.18
CPSF3-201ENST00000238112 TCHHQ07283 1943 aa22.4■■□□□ 1.18
CPSF3-201ENST00000238112 NMIQ13287 307 aaPredicted RBP22.39■■□□□ 1.17
CPSF3-201ENST00000238112 RIC3Q7Z5B4 369 aa22.39■■□□□ 1.17
CPSF3-201ENST00000238112 MTMR6Q9Y217 621 aa22.39■■□□□ 1.17
CPSF3-201ENST00000238112 PSMA5P28066 241 aa22.39■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms