RNA–Protein interactions for RNA: ENST00000237186.10

UBE3D-201, Transcript of ubiquitin protein ligase E3D, humanhuman

TSL 1 (best)

Gene UBE3D, Length 1,879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-201ENST00000237186 IGKV5-2P06315 115 aa19.68■□□□□ 0.74
UBE3D-201ENST00000237186 SNRPA1P09661 255 aaKnown RBP19.68■□□□□ 0.74
UBE3D-201ENST00000237186 PALD1Q9ULE6 856 aa19.68■□□□□ 0.74
UBE3D-201ENST00000237186 GOLGA6L22H0YM25 854 aa19.67■□□□□ 0.74
UBE3D-201ENST00000237186 HSPA4P34932 840 aa19.67■□□□□ 0.74
UBE3D-201ENST00000237186 CUL4AQ13619 759 aa19.67■□□□□ 0.74
UBE3D-201ENST00000237186 SUCLG2Q96I99 432 aa19.67■□□□□ 0.74
UBE3D-201ENST00000237186 SCN11AQ9UI33 1791 aa19.67■□□□□ 0.74
UBE3D-201ENST00000237186 CRYBG1Q9Y4K1 1723 aa19.67■□□□□ 0.74
UBE3D-201ENST00000237186 OS9Q13438 667 aaPredicted RBP19.67■□□□□ 0.74
UBE3D-201ENST00000237186 CHRNA2Q15822 529 aa19.67■□□□□ 0.74
UBE3D-201ENST00000237186 RIC3Q7Z5B4 369 aa19.67■□□□□ 0.74
UBE3D-201ENST00000237186 METTL22Q9BUU2 404 aaPredicted RBP19.67■□□□□ 0.74
UBE3D-201ENST00000237186 TMX3Q96JJ7 454 aa19.66■□□□□ 0.74
UBE3D-201ENST00000237186 GZF1Q9H116 711 aaPredicted RBP19.66■□□□□ 0.74
UBE3D-201ENST00000237186 IL25Q9H293 177 aa19.66■□□□□ 0.74
UBE3D-201ENST00000237186 ECHDC1Q9NTX5 307 aa19.66■□□□□ 0.74
UBE3D-201ENST00000237186 NEURL1BA8MQ27 555 aa19.65■□□□□ 0.74
UBE3D-201ENST00000237186 NEXNQ0ZGT2 675 aa19.65■□□□□ 0.74
UBE3D-201ENST00000237186 AIMP1Q12904 312 aaKnown RBP19.65■□□□□ 0.74
UBE3D-201ENST00000237186 INTS4Q96HW7 963 aaKnown RBP19.65■□□□□ 0.74
UBE3D-201ENST00000237186 BICC1Q9H694 974 aaKnown RBP19.65■□□□□ 0.74
UBE3D-201ENST00000237186 TTC5Q8N0Z6 440 aa19.65■□□□□ 0.74
UBE3D-201ENST00000237186 ZGPATQ8N5A5 531 aaKnown RBP19.65■□□□□ 0.74
UBE3D-201ENST00000237186 XAGE3Q8WTP9 111 aa19.65■□□□□ 0.74
UBE3D-201ENST00000237186 FMNL2Q96PY5 1086 aa19.65■□□□□ 0.74
UBE3D-201ENST00000237186 SOS2Q07890 1332 aaPredicted RBP19.64■□□□□ 0.74
UBE3D-201ENST00000237186 RAD50Q92878 1312 aa19.64■□□□□ 0.74
UBE3D-201ENST00000237186 GCKRQ14397 625 aa19.64■□□□□ 0.73
UBE3D-201ENST00000237186 COPS6Q7L5N1 327 aa19.64■□□□□ 0.73
UBE3D-201ENST00000237186 GPATCH3Q96I76 525 aa19.64■□□□□ 0.73
UBE3D-201ENST00000237186 LSG1Q9H089 658 aaKnown RBP19.64■□□□□ 0.73
UBE3D-201ENST00000237186 PA2G4Q9UQ80 394 aaKnown RBP19.64■□□□□ 0.73
UBE3D-201ENST00000237186 XRCC6P12956 609 aaKnown RBP eCLIP19.63■□□□□ 0.73
UBE3D-201ENST00000237186 ANKRD13DQ6ZTN6 518 aa19.63■□□□□ 0.73
UBE3D-201ENST00000237186 COL15A1P39059 1388 aa19.63■□□□□ 0.73
UBE3D-201ENST00000237186 USP16Q9Y5T5 823 aa19.62■□□□□ 0.73
UBE3D-201ENST00000237186 PKD1L3Q7Z443 1732 aa19.62■□□□□ 0.73
UBE3D-201ENST00000237186 SASH1O94885 1247 aa19.62■□□□□ 0.73
UBE3D-201ENST00000237186 MAP4K4O95819 1239 aaPredicted RBP19.62■□□□□ 0.73
UBE3D-201ENST00000237186 IFIT2P09913 472 aaKnown RBP19.62■□□□□ 0.73
UBE3D-201ENST00000237186 MYL6BP14649 208 aa19.62■□□□□ 0.73
UBE3D-201ENST00000237186 MRE11P49959 708 aa19.62■□□□□ 0.73
UBE3D-201ENST00000237186 G3BP1Q13283 466 aaKnown RBP eCLIP19.62■□□□□ 0.73
UBE3D-201ENST00000237186 KLHL40Q2TBA0 621 aa19.62■□□□□ 0.73
UBE3D-201ENST00000237186 ZDHHC9Q9Y397 364 aa19.61■□□□□ 0.73
UBE3D-201ENST00000237186 CABP4P57796 275 aa19.6■□□□□ 0.73
UBE3D-201ENST00000237186 PKP1Q13835 747 aa19.6■□□□□ 0.73
UBE3D-201ENST00000237186 RUFY2Q8WXA3 655 aa19.6■□□□□ 0.73
UBE3D-201ENST00000237186 EVI5LQ96CN4 794 aa19.6■□□□□ 0.73
UBE3D-201ENST00000237186 ERBB4Q15303 1308 aa19.6■□□□□ 0.73
UBE3D-201ENST00000237186 WDR17Q8IZU2 1322 aa19.6■□□□□ 0.73
UBE3D-201ENST00000237186 C5P01031 1676 aa19.59■□□□□ 0.73
UBE3D-201ENST00000237186 MYD88Q99836 296 aa19.59■□□□□ 0.73
UBE3D-201ENST00000237186 KIAA1211Q6ZU35 1233 aa19.58■□□□□ 0.73
UBE3D-201ENST00000237186 AACSQ86V21 672 aa19.58■□□□□ 0.73
UBE3D-201ENST00000237186 EAF2Q96CJ1 260 aaPredicted RBP19.58■□□□□ 0.73
UBE3D-201ENST00000237186 COPRSQ9NQ92 184 aa19.58■□□□□ 0.73
UBE3D-201ENST00000237186 NKX1-1Q15270 411 aaPredicted RBP19.58■□□□□ 0.72
UBE3D-201ENST00000237186 KCNB2Q92953 911 aa19.58■□□□□ 0.72
UBE3D-201ENST00000237186 SNX14Q9Y5W7 946 aa19.58■□□□□ 0.72
UBE3D-201ENST00000237186 ERVV-2B6SEH9 535 aa19.57■□□□□ 0.72
UBE3D-201ENST00000237186 RABL6Q3YEC7 729 aaPredicted RBP19.57■□□□□ 0.72
UBE3D-201ENST00000237186 CWC27Q6UX04 472 aaKnown RBP19.57■□□□□ 0.72
UBE3D-201ENST00000237186 SNRKQ9NRH2 765 aa19.57■□□□□ 0.72
UBE3D-201ENST00000237186 DIAPH3Q9NSV4 1193 aa19.57■□□□□ 0.72
UBE3D-201ENST00000237186 LMBRD1Q9NUN5 540 aa19.57■□□□□ 0.72
UBE3D-201ENST00000237186 PCDH11XQ9BZA7 1347 aa19.56■□□□□ 0.72
UBE3D-201ENST00000237186 PCDH11YQ9BZA8 1340 aa19.56■□□□□ 0.72
UBE3D-201ENST00000237186 HIP1O00291 1037 aa19.56■□□□□ 0.72
UBE3D-201ENST00000237186 ZCRB1Q8TBF4 217 aaKnown RBP19.56■□□□□ 0.72
UBE3D-201ENST00000237186 TTC14Q96N46 770 aa19.56■□□□□ 0.72
UBE3D-201ENST00000237186 BRD1O95696 1058 aa19.56■□□□□ 0.72
UBE3D-201ENST00000237186 EPHA10Q5JZY3 1008 aa19.56■□□□□ 0.72
UBE3D-201ENST00000237186 MCTP1Q6DN14 999 aa19.56■□□□□ 0.72
UBE3D-201ENST00000237186 PLBD2Q8NHP8 589 aa19.56■□□□□ 0.72
UBE3D-201ENST00000237186 UPF3BQ9BZI7 483 aaKnown RBP19.56■□□□□ 0.72
UBE3D-201ENST00000237186 GRPEL1Q9HAV7 217 aa19.56■□□□□ 0.72
UBE3D-201ENST00000237186 PRDM11Q9NQV5 511 aa19.56■□□□□ 0.72
UBE3D-201ENST00000237186 PARP4Q9UKK3 1724 aaKnown RBP19.56■□□□□ 0.72
UBE3D-201ENST00000237186 RFX5P48382 616 aaPredicted RBP19.55■□□□□ 0.72
UBE3D-201ENST00000237186 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP19.55■□□□□ 0.72
UBE3D-201ENST00000237186 DDX49Q9Y6V7 483 aaKnown RBP19.55■□□□□ 0.72
UBE3D-201ENST00000237186 NHSL1Q5SYE7 1610 aa19.54■□□□□ 0.72
UBE3D-201ENST00000237186 GLI3P10071 1580 aa19.54■□□□□ 0.72
UBE3D-201ENST00000237186 RASEFQ8IZ41 740 aa19.54■□□□□ 0.72
UBE3D-201ENST00000237186 CARD10Q9BWT7 1032 aa19.54■□□□□ 0.72
UBE3D-201ENST00000237186 CASP7P55210 303 aa19.53■□□□□ 0.72
UBE3D-201ENST00000237186 TOM1L2Q6ZVM7 507 aa19.53■□□□□ 0.72
UBE3D-201ENST00000237186 TM6SF1Q9BZW5 370 aa19.53■□□□□ 0.72
UBE3D-201ENST00000237186 PTPN12Q05209 780 aaKnown RBP19.52■□□□□ 0.72
UBE3D-201ENST00000237186 GAS2L3Q86XJ1 694 aa19.52■□□□□ 0.72
UBE3D-201ENST00000237186 CCDC8Q9H0W5 538 aaPredicted RBP19.52■□□□□ 0.72
UBE3D-201ENST00000237186 COL5A2P05997 1499 aaPredicted RBP19.52■□□□□ 0.72
UBE3D-201ENST00000237186 FAM43AQ8N2R8 423 aa19.52■□□□□ 0.71
UBE3D-201ENST00000237186 NBPF26B4DH59 902 aa19.51■□□□□ 0.71
UBE3D-201ENST00000237186 NBPF14Q5TI25 921 aa19.51■□□□□ 0.71
UBE3D-201ENST00000237186 NBPF10Q6P3W6 841 aaKnown RBP19.51■□□□□ 0.71
UBE3D-201ENST00000237186 NBPF15Q8N660 670 aa19.51■□□□□ 0.71
UBE3D-201ENST00000237186 PTH1RQ03431 593 aa19.5■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 95.2 ms