RNA–Protein interactions for RNA: ENST00000228251.8

YBX3-201, Transcript of Y-box binding protein 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene YBX3, Length 1,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-201ENST00000228251 COPS6Q7L5N1 327 aa23.47■■□□□ 1.35
YBX3-201ENST00000228251 TTC5Q8N0Z6 440 aa23.47■■□□□ 1.35
YBX3-201ENST00000228251 TNS2Q63HR2 1409 aa23.46■■□□□ 1.35
YBX3-201ENST00000228251 TOM1L2Q6ZVM7 507 aa23.45■■□□□ 1.34
YBX3-201ENST00000228251 COL15A1P39059 1388 aa23.45■■□□□ 1.34
YBX3-201ENST00000228251 ERVV-2B6SEH9 535 aa23.45■■□□□ 1.34
YBX3-201ENST00000228251 MYL6BP14649 208 aa23.45■■□□□ 1.34
YBX3-201ENST00000228251 RIC3Q7Z5B4 369 aa23.45■■□□□ 1.34
YBX3-201ENST00000228251 ERBB4Q15303 1308 aa23.44■■□□□ 1.34
YBX3-201ENST00000228251 MCM4P33991 863 aa23.44■■□□□ 1.34
YBX3-201ENST00000228251 GCKRQ14397 625 aa23.44■■□□□ 1.34
YBX3-201ENST00000228251 BICC1Q9H694 974 aaKnown RBP23.44■■□□□ 1.34
YBX3-201ENST00000228251 TTC41PQ6P2S7 1318 aa23.43■■□□□ 1.34
YBX3-201ENST00000228251 EPB41L2O43491 1005 aaKnown RBP23.43■■□□□ 1.34
YBX3-201ENST00000228251 IL2RBP14784 551 aa23.42■■□□□ 1.34
YBX3-201ENST00000228251 TJP1Q07157 1748 aa23.42■■□□□ 1.34
YBX3-201ENST00000228251 TRIM6-TRIM34B2RNG4 842 aa23.42■■□□□ 1.34
YBX3-201ENST00000228251 ANKRD13DQ6ZTN6 518 aa23.42■■□□□ 1.34
YBX3-201ENST00000228251 RAB3GAP1Q15042 981 aa23.41■■□□□ 1.34
YBX3-201ENST00000228251 ERC1Q8IUD2 1116 aa23.41■■□□□ 1.34
YBX3-201ENST00000228251 RILPL2Q969X0 211 aa23.41■■□□□ 1.34
YBX3-201ENST00000228251 PA2G4Q9UQ80 394 aaKnown RBP23.41■■□□□ 1.34
YBX3-201ENST00000228251 COL22A1Q8NFW1 1626 aaPredicted RBP23.41■■□□□ 1.34
YBX3-201ENST00000228251 NEXNQ0ZGT2 675 aa23.4■■□□□ 1.34
YBX3-201ENST00000228251 IL25Q9H293 177 aa23.4■■□□□ 1.34
YBX3-201ENST00000228251 MYD88Q99836 296 aa23.4■■□□□ 1.34
YBX3-201ENST00000228251 COL14A1Q05707 1796 aaKnown RBP23.39■■□□□ 1.33
YBX3-201ENST00000228251 NBPF26B4DH59 902 aa23.39■■□□□ 1.33
YBX3-201ENST00000228251 SASH1O94885 1247 aa23.39■■□□□ 1.33
YBX3-201ENST00000228251 NBPF14Q5TI25 921 aa23.39■■□□□ 1.33
YBX3-201ENST00000228251 NBPF10Q6P3W6 841 aaKnown RBP23.39■■□□□ 1.33
YBX3-201ENST00000228251 NBPF15Q8N660 670 aa23.39■■□□□ 1.33
YBX3-201ENST00000228251 PLCH1Q4KWH8 1693 aa23.39■■□□□ 1.33
YBX3-201ENST00000228251 ANAPC15P60006 121 aa23.38■■□□□ 1.33
YBX3-201ENST00000228251 PIP4K2AP48426 406 aaPredicted RBP23.37■■□□□ 1.33
YBX3-201ENST00000228251 EPHA10Q5JZY3 1008 aa23.37■■□□□ 1.33
YBX3-201ENST00000228251 CLASRPQ8N2M8 674 aaKnown RBP23.37■■□□□ 1.33
YBX3-201ENST00000228251 AHDC1Q5TGY3 1603 aaPredicted RBP23.37■■□□□ 1.33
YBX3-201ENST00000228251 COL16A1Q07092 1604 aaPredicted RBP23.37■■□□□ 1.33
YBX3-201ENST00000228251 GLRX3O76003 335 aaKnown RBP23.37■■□□□ 1.33
YBX3-201ENST00000228251 PLBD2Q8NHP8 589 aa23.37■■□□□ 1.33
YBX3-201ENST00000228251 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP23.37■■□□□ 1.33
YBX3-201ENST00000228251 ITGB4P16144 1822 aa23.37■■□□□ 1.33
YBX3-201ENST00000228251 WNK3Q9BYP7 1800 aa23.36■■□□□ 1.33
YBX3-201ENST00000228251 CASP7P55210 303 aa23.36■■□□□ 1.33
YBX3-201ENST00000228251 TNPO1Q92973 898 aaKnown RBP23.36■■□□□ 1.33
YBX3-201ENST00000228251 PALD1Q9ULE6 856 aa23.36■■□□□ 1.33
YBX3-201ENST00000228251 DISP2A7MBM2 1401 aa23.36■■□□□ 1.33
YBX3-201ENST00000228251 ROBO1Q9Y6N7 1651 aa23.35■■□□□ 1.33
YBX3-201ENST00000228251 OS9Q13438 667 aaPredicted RBP23.35■■□□□ 1.33
YBX3-201ENST00000228251 RABL6Q3YEC7 729 aaPredicted RBP23.35■■□□□ 1.33
YBX3-201ENST00000228251 SGSM2O43147 1006 aa23.35■■□□□ 1.33
YBX3-201ENST00000228251 ST18O60284 1047 aa23.35■■□□□ 1.33
YBX3-201ENST00000228251 CNTROBQ8N137 903 aa23.35■■□□□ 1.33
YBX3-201ENST00000228251 ECHDC1Q9NTX5 307 aa23.35■■□□□ 1.33
YBX3-201ENST00000228251 RFX5P48382 616 aaPredicted RBP23.34■■□□□ 1.33
YBX3-201ENST00000228251 CLEC17AQ6ZS10 378 aa23.34■■□□□ 1.33
YBX3-201ENST00000228251 ANO2Q9NQ90 1003 aa23.33■■□□□ 1.33
YBX3-201ENST00000228251 MAP4K4O95819 1239 aaPredicted RBP23.32■■□□□ 1.32
YBX3-201ENST00000228251 COPRSQ9NQ92 184 aa23.32■■□□□ 1.32
YBX3-201ENST00000228251 EAF2Q96CJ1 260 aaPredicted RBP23.32■■□□□ 1.32
YBX3-201ENST00000228251 STRN4Q9NRL3 753 aa23.32■■□□□ 1.32
YBX3-201ENST00000228251 LRP6O75581 1613 aa23.32■■□□□ 1.32
YBX3-201ENST00000228251 RAD50Q92878 1312 aa23.31■■□□□ 1.32
YBX3-201ENST00000228251 HSP90AA1P07900 732 aaKnown RBP23.31■■□□□ 1.32
YBX3-201ENST00000228251 HSPA4P34932 840 aa23.31■■□□□ 1.32
YBX3-201ENST00000228251 FOXD4L1Q9NU39 408 aa23.31■■□□□ 1.32
YBX3-201ENST00000228251 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.3■■□□□ 1.32
YBX3-201ENST00000228251 CYP2E1P05181 493 aaPredicted RBP23.3■■□□□ 1.32
YBX3-201ENST00000228251 MCCP23508 829 aa23.3■■□□□ 1.32
YBX3-201ENST00000228251 G3BP1Q13283 466 aaKnown RBP eCLIP23.3■■□□□ 1.32
YBX3-201ENST00000228251 LSG1Q9H089 658 aaKnown RBP23.3■■□□□ 1.32
YBX3-201ENST00000228251 DDX11L8A8MPP1 907 aa23.29■■□□□ 1.32
YBX3-201ENST00000228251 AACSQ86V21 672 aa23.29■■□□□ 1.32
YBX3-201ENST00000228251 IFIT2P09913 472 aaKnown RBP23.29■■□□□ 1.32
YBX3-201ENST00000228251 EVA1CP58658 441 aa23.29■■□□□ 1.32
YBX3-201ENST00000228251 DDX54Q8TDD1 881 aaKnown RBP23.29■■□□□ 1.32
YBX3-201ENST00000228251 H7C1W4 665 aa23.28■■□□□ 1.32
YBX3-201ENST00000228251 PTPN12Q05209 780 aaKnown RBP23.28■■□□□ 1.32
YBX3-201ENST00000228251 TTLL7Q6ZT98 887 aa23.28■■□□□ 1.32
YBX3-201ENST00000228251 IL27Q8NEV9 243 aa23.28■■□□□ 1.32
YBX3-201ENST00000228251 GPATCH3Q96I76 525 aa23.28■■□□□ 1.32
YBX3-201ENST00000228251 UBE3BQ7Z3V4 1068 aa23.27■■□□□ 1.32
YBX3-201ENST00000228251 ATP5J2-PTCD1G3V325 749 aa23.27■■□□□ 1.32
YBX3-201ENST00000228251 PTCD1O75127 700 aaKnown RBP23.27■■□□□ 1.32
YBX3-201ENST00000228251 A1BGP04217 495 aa23.27■■□□□ 1.32
YBX3-201ENST00000228251 MCM2P49736 904 aa23.27■■□□□ 1.32
YBX3-201ENST00000228251 NEK4P51957 841 aa23.27■■□□□ 1.32
YBX3-201ENST00000228251 KLHDC4Q8TBB5 520 aa23.27■■□□□ 1.32
YBX3-201ENST00000228251 CWC22Q9HCG8 908 aaKnown RBP23.27■■□□□ 1.32
YBX3-201ENST00000228251 SSFA2P28290 1259 aa23.26■■□□□ 1.31
YBX3-201ENST00000228251 TLR7Q9NYK1 1049 aaKnown RBP23.26■■□□□ 1.31
YBX3-201ENST00000228251 A0A087WZG4 1122 aa23.25■■□□□ 1.31
YBX3-201ENST00000228251 CUL4AQ13619 759 aa23.25■■□□□ 1.31
YBX3-201ENST00000228251 EVI5LQ96CN4 794 aa23.25■■□□□ 1.31
YBX3-201ENST00000228251 BTG4Q9NY30 223 aa23.25■■□□□ 1.31
YBX3-201ENST00000228251 TRAK2O60296 914 aa23.24■■□□□ 1.31
YBX3-201ENST00000228251 FOXO4P98177 505 aa23.24■■□□□ 1.31
YBX3-201ENST00000228251 JARID2Q92833 1246 aaPredicted RBP23.24■■□□□ 1.31
YBX3-201ENST00000228251 GBP4Q96PP9 640 aa23.24■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms