RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 CDS1Q92903 461 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 OR2AG1Q9H205 316 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 IPPKQ9H8X2 491 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 NHEJ1Q9H9Q4 299 aaPredicted RBP3.42□□□□□ -1.86
SCN1A-221ENST00000641996 B3GAT2Q9NPZ5 323 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 PRDM9Q9NQV7 894 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 ANKRD30BLA7E2S9 258 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 TGM5O43548 720 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 SDC3O75056 442 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 HEXAP06865 529 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 DDTP30046 118 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 NDST2P52849 883 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 AQP4P55087 323 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 COX19Q49B96 90 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 FFAR4Q5NUL3 377 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 ZNF562Q6V9R5 426 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 FAM129CQ86XR2 697 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 FAM58AQ8N1B3 248 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 UBAC2Q8NBM4 344 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 OR7G3Q8NG95 312 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 APOLD1Q96LR9 279 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 CHP1Q99653 195 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 SLC6A20Q9NP91 592 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 SLCO1B1Q9Y6L6 691 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 GRIN2DO15399 1336 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 KLRG2A4D1S0 409 aaPredicted RBP3.41□□□□□ -1.86
SCN1A-221ENST00000641996 PLPP1O14494 284 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 B3GALT2O43825 422 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 RNASEH1O60930 286 aaKnown RBP3.41□□□□□ -1.86
SCN1A-221ENST00000641996 TRUB2O95900 331 aaKnown RBP3.41□□□□□ -1.86
SCN1A-221ENST00000641996 A1BGP04217 495 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 CLCNKAP51800 687 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 ADPRHP54922 357 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 ID2Q02363 134 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 TEKQ02763 1124 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 KCNAB1Q14722 419 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 PEA15Q15121 130 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 LTB4RQ15722 352 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 TRMT5Q32P41 509 aaKnown RBP3.41□□□□□ -1.86
SCN1A-221ENST00000641996 LIPIQ6XZB0 460 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 RETREG3Q86VR2 466 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 DTD2Q96FN9 168 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 TAAR1Q96RJ0 339 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 TMEM109Q9BVC6 243 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 SLC2A8Q9NY64 477 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 DTLQ9NZJ0 730 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 TOX3O15405 576 aaPredicted RBP3.41□□□□□ -1.86
SCN1A-221ENST00000641996 SCO2O43819 266 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 CSF3P09919 207 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 DGKEP52429 567 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 MRPS10P82664 201 aaKnown RBP3.41□□□□□ -1.86
SCN1A-221ENST00000641996 ZNF415Q09FC8 603 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 GCKRQ14397 625 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 C11orf57Q6ZUT1 292 aaPredicted RBP3.41□□□□□ -1.86
SCN1A-221ENST00000641996 RASGRP4Q8TDF6 673 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 SUSD3Q96L08 255 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 KCNA7Q96RP8 456 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 ZNHIT2Q9UHR6 403 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 MSRAQ9UJ68 235 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 TCFL5Q9UL49 500 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 UBE2J1Q9Y385 318 aaPredicted RBP3.41□□□□□ -1.86
SCN1A-221ENST00000641996 MROH5Q6ZUA9 1318 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 ZNF816-ZNF321PA0A0X1KG74 233 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 H3BNX3 289 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 OGG1O15527 345 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 CELA3AP09093 270 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 ADH6P28332 368 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 CHI3L1P36222 383 aaPredicted RBP3.41□□□□□ -1.86
SCN1A-221ENST00000641996 RPS15P62841 145 aaKnown RBP3.41□□□□□ -1.86
SCN1A-221ENST00000641996 TARDBPQ13148 414 aaKnown RBP eCLIP3.41□□□□□ -1.86
SCN1A-221ENST00000641996 SLC35G1Q2M3R5 365 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 PYDC2Q56P42 97 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 KHDC1LQ5JSQ8 128 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 TMEM88Q6PEY1 159 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 TMED4Q7Z7H5 227 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 SIAH1Q8IUQ4 282 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 ZNF511Q8NB15 262 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 GPR150Q8NGU9 434 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 RHBDD1Q8TEB9 315 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 MYLIPQ8WY64 445 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 HAS1Q92839 578 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 AKT1S1Q96B36 256 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 LENG9Q96B70 501 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 LIN37Q96GY3 246 aaPredicted RBP3.41□□□□□ -1.86
SCN1A-221ENST00000641996 KLHDC3Q9BQ90 382 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 P2RY12Q9H244 342 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 TMEM27Q9HBJ8 222 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 AGPAT4Q9NRZ5 378 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 MRPS33Q9Y291 106 aaKnown RBP3.41□□□□□ -1.86
SCN1A-221ENST00000641996 A0A1W2PN81 502 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 AHRRA9YTQ3 701 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 ARPC2O15144 300 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 PPM1DO15297 605 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 AVILO75366 819 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 TXNP10599 105 aaKnown RBP3.41□□□□□ -1.86
SCN1A-221ENST00000641996 CHRNA7P36544 502 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 PRPSAP1Q14558 356 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 VASNQ6EMK4 673 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 ABI1Q8IZP0 508 aa3.41□□□□□ -1.86
SCN1A-221ENST00000641996 OR52J3Q8NH60 311 aa3.41□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms