RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 MDGA1Q8NFP4 955 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 OR10T2Q8NGX3 314 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 MFSD8Q8NHS3 518 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 OR10A5Q9H207 317 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 OR10A2Q9H208 303 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 COMMD3-BMI1R4GMX3 469 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 FSCN2O14926 492 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 PRDX6P30041 224 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 SFTPDP35247 375 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 ASTE1Q2TB18 679 aaPredicted RBP5.87□□□□□ -1.47
SCN1A-217ENST00000637988 LRRN1Q6UXK5 716 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 USP43Q70EL4 1123 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 SLC46A3Q7Z3Q1 461 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 WDR53Q7Z5U6 358 aaPredicted RBP5.87□□□□□ -1.47
SCN1A-217ENST00000637988 KDM1BQ8NB78 822 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 TSPEARQ8WU66 669 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 UHRF1Q96T88 793 aaPredicted RBP5.87□□□□□ -1.47
SCN1A-217ENST00000637988 ATP13A2Q9NQ11 1180 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 FAM120CQ9NX05 1096 aaKnown RBP5.87□□□□□ -1.47
SCN1A-217ENST00000637988 GSKIPQ9P0R6 139 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 COPZ2Q9P299 210 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 CDH10Q9Y6N8 788 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 CST3P01034 146 aaPredicted RBP5.87□□□□□ -1.47
SCN1A-217ENST00000637988 GLB1P16278 677 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 SLC6A4P31645 630 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 ETV3P41162 512 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 AGTR2P50052 363 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 ACTC1P68032 377 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 ACTA1P68133 377 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 ADAM15Q13444 863 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 TYSND1Q2T9J0 566 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 FSTL4Q6MZW2 842 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 LYPD8Q6UX82 237 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 BTLAQ7Z6A9 289 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 TRABD2AQ86V40 505 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 OR1J4Q8NGS1 313 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 ZNF689Q96CS4 500 aaPredicted RBP5.87□□□□□ -1.47
SCN1A-217ENST00000637988 GIMAP5Q96F15 307 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 C1orf74Q96LT6 269 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 TWNKQ96RR1 684 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 KAT8Q9H7Z6 458 aaKnown RBP5.87□□□□□ -1.47
SCN1A-217ENST00000637988 MARCH7Q9H992 704 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 RXFP3Q9NSD7 469 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 POT1Q9NUX5 634 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 CDH22Q9UJ99 828 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 ZNF860A6NHJ4 632 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 SULT2B1O00204 365 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 EMC8O43402 210 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 ENSAO43768 121 aaKnown RBP5.87□□□□□ -1.47
SCN1A-217ENST00000637988 DEFA4P12838 97 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 ENGP17813 658 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 EFNA1P20827 205 aaPredicted RBP5.87□□□□□ -1.47
SCN1A-217ENST00000637988 RBMXP38159 391 aaKnown RBP5.87□□□□□ -1.47
SCN1A-217ENST00000637988 GATMP50440 423 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 CLCN2P51788 898 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 NTRK2Q16620 822 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 SLC35G1Q2M3R5 365 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 SOWAHAQ2M3V2 549 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 LRIT3Q3SXY7 679 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 TMEM63BQ5T3F8 832 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 ANKRD26P1Q6NSI1 321 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 KCNK18Q7Z418 384 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 ZNF687Q8N1G0 1237 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 CENPOQ9BU64 300 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 MAGEE1Q9HCI5 957 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 MROH1Q8NDA8 1641 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 TRBV11-1A0A0K0K1C0 115 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 C13orf42A0A1B0GVH6 325 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 GLOD5A6NK44 160 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 ZNF780AO75290 641 aaPredicted RBP5.87□□□□□ -1.47
SCN1A-217ENST00000637988 NIPSNAP2O75323 286 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 OLFM2O95897 454 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 CCNE2O96020 404 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 UQCRC1P31930 480 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 BST1Q10588 318 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 PDK3Q15120 406 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 ELMOD2Q8IZ81 293 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 PARP8Q8N3A8 854 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 GATSQ8NAP1 163 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 NFKBIDQ8NI38 313 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 PBX4Q9BYU1 374 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 CTPS2Q9NRF8 586 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 LHX6Q9UPM6 363 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 WIF1Q9Y5W5 379 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 A0A0G2JPF8 293 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 A0A1W2PQ09 198 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 A6NIZ1 184 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 HNRNPCL3B7ZW38 293 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 RPLP0P05388 317 aaKnown RBP5.86□□□□□ -1.47
SCN1A-217ENST00000637988 HNRNPCL4P0DMR1 293 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 HOXD8P13378 290 aaPredicted RBP5.86□□□□□ -1.47
SCN1A-217ENST00000637988 AKR1C4P17516 323 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 ID4P47928 161 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 SSR4P51571 173 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 AKR1C2P52895 323 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 RAP1BP61224 184 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 RAP1AP62834 184 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 GBE1Q04446 702 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 FOXC1Q12948 553 aa5.86□□□□□ -1.47
SCN1A-217ENST00000637988 DYRK1AQ13627 763 aa5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms