RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 HACD4Q5VWC8 232 aa5.49□□□□□ -1.53
SCN1A-216ENST00000637968 MEDAGQ5VYS4 303 aa5.49□□□□□ -1.53
SCN1A-216ENST00000637968 FBXO46Q6PJ61 603 aaPredicted RBP5.49□□□□□ -1.53
SCN1A-216ENST00000637968 CERS6Q6ZMG9 384 aa5.49□□□□□ -1.53
SCN1A-216ENST00000637968 KLHDC8BQ8IXV7 354 aa5.49□□□□□ -1.53
SCN1A-216ENST00000637968 CRYBG2Q8N1P7 616 aa5.49□□□□□ -1.53
SCN1A-216ENST00000637968 TMEM151AQ8N4L1 468 aa5.49□□□□□ -1.53
SCN1A-216ENST00000637968 NANOGP1Q8N7R0 232 aa5.49□□□□□ -1.53
SCN1A-216ENST00000637968 OR2L3Q8NG85 312 aa5.49□□□□□ -1.53
SCN1A-216ENST00000637968 OR56A4Q8NGH8 313 aa5.49□□□□□ -1.53
SCN1A-216ENST00000637968 MRPS24Q96EL2 167 aaKnown RBP5.49□□□□□ -1.53
SCN1A-216ENST00000637968 CPNE2Q96FN4 548 aaPredicted RBP5.49□□□□□ -1.53
SCN1A-216ENST00000637968 FAM193BQ96PV7 902 aaPredicted RBP5.49□□□□□ -1.53
SCN1A-216ENST00000637968 WDR83Q9BRX9 315 aaKnown RBP5.49□□□□□ -1.53
SCN1A-216ENST00000637968 MENTQ9BUN1 341 aa5.49□□□□□ -1.53
SCN1A-216ENST00000637968 GLRX2Q9NS18 164 aa5.49□□□□□ -1.53
SCN1A-216ENST00000637968 GPR83Q9NYM4 423 aa5.49□□□□□ -1.53
SCN1A-216ENST00000637968 GDE1Q9NZC3 331 aa5.49□□□□□ -1.53
SCN1A-216ENST00000637968 NPFFR2Q9Y5X5 522 aa5.49□□□□□ -1.53
SCN1A-216ENST00000637968 MEIKINA0A087WXM9 373 aa5.49□□□□□ -1.53
SCN1A-216ENST00000637968 PLSCR5A0PG75 271 aa5.49□□□□□ -1.53
SCN1A-216ENST00000637968 BCLAF3A2AJT9 711 aaKnown RBP5.49□□□□□ -1.53
SCN1A-216ENST00000637968 GSAPA4D1B5 854 aa5.49□□□□□ -1.53
SCN1A-216ENST00000637968 PHOX2AO14813 284 aa5.49□□□□□ -1.53
SCN1A-216ENST00000637968 ADAMTS3O15072 1205 aa5.49□□□□□ -1.53
SCN1A-216ENST00000637968 LDLRAD4O15165 306 aa5.49□□□□□ -1.53
SCN1A-216ENST00000637968 PGRMC2O15173 223 aa5.49□□□□□ -1.53
SCN1A-216ENST00000637968 CASC3O15234 703 aaKnown RBP5.49□□□□□ -1.53
SCN1A-216ENST00000637968 CREBL2O60519 120 aaPredicted RBP5.49□□□□□ -1.53
SCN1A-216ENST00000637968 PLGP00747 810 aaPredicted RBP5.49□□□□□ -1.53
SCN1A-216ENST00000637968 ANXA2P07355 339 aaKnown RBP5.49□□□□□ -1.53
SCN1A-216ENST00000637968 CTBP2P56545 445 aa5.49□□□□□ -1.53
SCN1A-216ENST00000637968 ZNF280AP59817 542 aaPredicted RBP5.49□□□□□ -1.53
SCN1A-216ENST00000637968 DDX39BQ13838 428 aaKnown RBP5.49□□□□□ -1.53
SCN1A-216ENST00000637968 PTPRCAPQ14761 206 aa5.49□□□□□ -1.53
SCN1A-216ENST00000637968 IER5Q5VY09 327 aa5.49□□□□□ -1.53
SCN1A-216ENST00000637968 B3GNTL1Q67FW5 361 aaPredicted RBP5.49□□□□□ -1.53
SCN1A-216ENST00000637968 ADAM5Q6NVV9 412 aa5.49□□□□□ -1.53
SCN1A-216ENST00000637968 NOTUMQ6P988 496 aa5.49□□□□□ -1.53
SCN1A-216ENST00000637968 TRIM46Q7Z4K8 759 aa5.49□□□□□ -1.53
SCN1A-216ENST00000637968 KIAA0907Q7Z7F0 614 aaPredicted RBP5.49□□□□□ -1.53
SCN1A-216ENST00000637968 CACUL1Q86Y37 369 aa5.49□□□□□ -1.53
SCN1A-216ENST00000637968 CDK20Q8IZL9 346 aa5.49□□□□□ -1.53
SCN1A-216ENST00000637968 HGDQ93099 445 aa5.49□□□□□ -1.53
SCN1A-216ENST00000637968 L3HYPDHQ96EM0 354 aa5.49□□□□□ -1.53
SCN1A-216ENST00000637968 ZNF845Q96IR2 970 aaPredicted RBP5.49□□□□□ -1.53
SCN1A-216ENST00000637968 HSPA12BQ96MM6 686 aa5.49□□□□□ -1.53
SCN1A-216ENST00000637968 TOX2Q96NM4 488 aa5.49□□□□□ -1.53
SCN1A-216ENST00000637968 OR4K3Q96R72 315 aa5.49□□□□□ -1.53
SCN1A-216ENST00000637968 ELF4Q99607 663 aaPredicted RBP5.49□□□□□ -1.53
SCN1A-216ENST00000637968 DUSP26Q9BV47 211 aa5.49□□□□□ -1.53
SCN1A-216ENST00000637968 TMEM185BQ9H7F4 350 aa5.49□□□□□ -1.53
SCN1A-216ENST00000637968 FBRSL1Q9HCM7 1045 aaKnown RBP5.49□□□□□ -1.53
SCN1A-216ENST00000637968 PARD6AQ9NPB6 346 aa5.49□□□□□ -1.53
SCN1A-216ENST00000637968 KRCC1Q9NPI7 259 aaPredicted RBP5.49□□□□□ -1.53
SCN1A-216ENST00000637968 TMEM45AQ9NWC5 275 aa5.49□□□□□ -1.53
SCN1A-216ENST00000637968 PSORS1C1Q9UIG5 152 aa5.49□□□□□ -1.53
SCN1A-216ENST00000637968 PCDHGA6Q9Y5G7 932 aa5.49□□□□□ -1.53
SCN1A-216ENST00000637968 FAM95CA0A1B0GW59 222 aa5.49□□□□□ -1.53
SCN1A-216ENST00000637968 ZNF705GA8MUZ8 300 aaPredicted RBP5.49□□□□□ -1.53
SCN1A-216ENST00000637968 ZNF670-ZNF695F2Z2N8 137 aa5.49□□□□□ -1.53
SCN1A-216ENST00000637968 FGF7P21781 194 aa5.49□□□□□ -1.53
SCN1A-216ENST00000637968 OR2B8PP59922 312 aa5.49□□□□□ -1.53
SCN1A-216ENST00000637968 CLN3Q13286 438 aa5.49□□□□□ -1.53
SCN1A-216ENST00000637968 CRHR2Q13324 411 aa5.49□□□□□ -1.53
SCN1A-216ENST00000637968 IKZF1Q13422 519 aa5.49□□□□□ -1.53
SCN1A-216ENST00000637968 ZNF234Q14588 700 aa5.49□□□□□ -1.53
SCN1A-216ENST00000637968 C22orf42Q6IC83 251 aa5.49□□□□□ -1.53
SCN1A-216ENST00000637968 CAPN13Q6MZZ7 669 aaPredicted RBP5.49□□□□□ -1.53
SCN1A-216ENST00000637968 SLC39A4Q6P5W5 647 aa5.49□□□□□ -1.53
SCN1A-216ENST00000637968 CYP4Z1Q86W10 505 aa5.49□□□□□ -1.53
SCN1A-216ENST00000637968 RNF113BQ8IZP6 322 aaKnown RBP5.49□□□□□ -1.53
SCN1A-216ENST00000637968 GPD1LQ8N335 351 aa5.49□□□□□ -1.53
SCN1A-216ENST00000637968 GTPBP8Q8N3Z3 284 aaPredicted RBP5.49□□□□□ -1.53
SCN1A-216ENST00000637968 OR10D4PQ8NGN7 298 aa5.49□□□□□ -1.53
SCN1A-216ENST00000637968 OR1J4Q8NGS1 313 aa5.49□□□□□ -1.53
SCN1A-216ENST00000637968 OR10A6Q8NH74 314 aa5.49□□□□□ -1.53
SCN1A-216ENST00000637968 STYXQ8WUJ0 223 aa5.49□□□□□ -1.53
SCN1A-216ENST00000637968 TWIST2Q8WVJ9 160 aa5.49□□□□□ -1.53
SCN1A-216ENST00000637968 TMEM203Q969S6 136 aa5.49□□□□□ -1.53
SCN1A-216ENST00000637968 ZBED6CLQ96FA7 236 aaPredicted RBP5.49□□□□□ -1.53
SCN1A-216ENST00000637968 KCNC2Q96PR1 638 aa5.49□□□□□ -1.53
SCN1A-216ENST00000637968 SDHCQ99643 169 aaPredicted RBP5.49□□□□□ -1.53
SCN1A-216ENST00000637968 THAP7Q9BT49 309 aaPredicted RBP5.49□□□□□ -1.53
SCN1A-216ENST00000637968 TMED9Q9BVK6 235 aa5.49□□□□□ -1.53
SCN1A-216ENST00000637968 PINK1Q9BXM7 581 aa5.49□□□□□ -1.53
SCN1A-216ENST00000637968 RHOJQ9H4E5 214 aa5.49□□□□□ -1.53
SCN1A-216ENST00000637968 CDHR5Q9HBB8 845 aa5.49□□□□□ -1.53
SCN1A-216ENST00000637968 LTB4R2Q9NPC1 389 aa5.49□□□□□ -1.53
SCN1A-216ENST00000637968 NANSQ9NR45 359 aa5.49□□□□□ -1.53
SCN1A-216ENST00000637968 DLL4Q9NR61 685 aa5.49□□□□□ -1.53
SCN1A-216ENST00000637968 FLRT1Q9NZU1 646 aa5.49□□□□□ -1.53
SCN1A-216ENST00000637968 TNS2Q63HR2 1409 aa5.49□□□□□ -1.53
SCN1A-216ENST00000637968 MROH2AA6NES4 1674 aa5.49□□□□□ -1.53
SCN1A-216ENST00000637968 CPED1A4D0V7 1026 aa5.48□□□□□ -1.53
SCN1A-216ENST00000637968 USP17L15C9J2P7 530 aa5.48□□□□□ -1.53
SCN1A-216ENST00000637968 USP17L11C9JVI0 530 aa5.48□□□□□ -1.53
SCN1A-216ENST00000637968 USP17L18D6R9N7 530 aa5.48□□□□□ -1.53
SCN1A-216ENST00000637968 USP17L22D6RA61 530 aa5.48□□□□□ -1.53
SCN1A-216ENST00000637968 USP17L19D6RCP7 530 aa5.48□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms