RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 DNAJC27Q9NZQ0 273 aa12.09□□□□□ -0.47
LINC00540-203ENST00000631321 P2RX2Q9UBL9 471 aa12.09□□□□□ -0.47
LINC00540-203ENST00000631321 A4GNTQ9UNA3 340 aa12.09□□□□□ -0.47
LINC00540-203ENST00000631321 INSL6Q9Y581 213 aa12.09□□□□□ -0.47
LINC00540-203ENST00000631321 PCDHGA4Q9Y5G9 962 aa12.09□□□□□ -0.47
LINC00540-203ENST00000631321 PDE4DIPQ5VU43 2346 aa12.09□□□□□ -0.47
LINC00540-203ENST00000631321 KIF26AQ9ULI4 1882 aaPredicted RBP12.09□□□□□ -0.47
LINC00540-203ENST00000631321 KIAA1549LQ6ZVL6 1849 aa12.09□□□□□ -0.47
LINC00540-203ENST00000631321 NDUFS4O43181 175 aa12.09□□□□□ -0.47
LINC00540-203ENST00000631321 SOX14O95416 240 aa12.09□□□□□ -0.47
LINC00540-203ENST00000631321 POU2F2P09086 479 aa12.09□□□□□ -0.47
LINC00540-203ENST00000631321 TIE1P35590 1138 aa12.09□□□□□ -0.47
LINC00540-203ENST00000631321 FEN1P39748 380 aaKnown RBP12.09□□□□□ -0.47
LINC00540-203ENST00000631321 CRYBB2P43320 205 aa12.09□□□□□ -0.47
LINC00540-203ENST00000631321 SLC6A11P48066 632 aa12.09□□□□□ -0.47
LINC00540-203ENST00000631321 DGKEP52429 567 aa12.09□□□□□ -0.47
LINC00540-203ENST00000631321 DEFA1P59665 94 aa12.09□□□□□ -0.47
LINC00540-203ENST00000631321 DEFA3P59666 94 aa12.09□□□□□ -0.47
LINC00540-203ENST00000631321 COX10Q12887 443 aa12.09□□□□□ -0.47
LINC00540-203ENST00000631321 LRRC26Q2I0M4 334 aa12.09□□□□□ -0.47
LINC00540-203ENST00000631321 ATAD3BQ5T9A4 648 aa12.09□□□□□ -0.47
LINC00540-203ENST00000631321 DESI1Q6ICB0 168 aa12.09□□□□□ -0.47
LINC00540-203ENST00000631321 CASP12Q6UXS9 341 aa12.09□□□□□ -0.47
LINC00540-203ENST00000631321 DEF8Q6ZN54 512 aa12.09□□□□□ -0.47
LINC00540-203ENST00000631321 WDR53Q7Z5U6 358 aaPredicted RBP12.09□□□□□ -0.47
LINC00540-203ENST00000631321 LRRTM4Q86VH4 590 aa12.09□□□□□ -0.47
LINC00540-203ENST00000631321 FAM26EQ8N5C1 309 aa12.09□□□□□ -0.47
LINC00540-203ENST00000631321 NANOGP1Q8N7R0 232 aa12.09□□□□□ -0.47
LINC00540-203ENST00000631321 SCAIQ8N9R8 606 aa12.09□□□□□ -0.47
LINC00540-203ENST00000631321 POF1BQ8WVV4 589 aa12.09□□□□□ -0.47
LINC00540-203ENST00000631321 EXOSC8Q96B26 276 aaKnown RBP12.09□□□□□ -0.47
LINC00540-203ENST00000631321 NRTNQ99748 197 aa12.09□□□□□ -0.47
LINC00540-203ENST00000631321 SLC30A2Q9BRI3 323 aa12.09□□□□□ -0.47
LINC00540-203ENST00000631321 HDAC8Q9BY41 377 aa12.09□□□□□ -0.47
LINC00540-203ENST00000631321 EHD3Q9NZN3 535 aa12.09□□□□□ -0.47
LINC00540-203ENST00000631321 C5AR2Q9P296 337 aa12.09□□□□□ -0.47
LINC00540-203ENST00000631321 CLEC2DQ9UHP7 191 aa12.09□□□□□ -0.47
LINC00540-203ENST00000631321 SNX11Q9Y5W9 270 aa12.09□□□□□ -0.47
LINC00540-203ENST00000631321 A0A0A6YYD5 115 aa12.08□□□□□ -0.48
LINC00540-203ENST00000631321 HEPACAM2A8MVW5 462 aa12.08□□□□□ -0.48
LINC00540-203ENST00000631321 CTDSP2O14595 271 aa12.08□□□□□ -0.48
LINC00540-203ENST00000631321 SLC28A2O43868 658 aa12.08□□□□□ -0.48
LINC00540-203ENST00000631321 EIF2S1P05198 315 aaKnown RBP12.08□□□□□ -0.48
LINC00540-203ENST00000631321 BMPR1AP36894 532 aa12.08□□□□□ -0.48
LINC00540-203ENST00000631321 FOXD4Q12950 439 aaPredicted RBP12.08□□□□□ -0.48
LINC00540-203ENST00000631321 KCNJ8Q15842 424 aa12.08□□□□□ -0.48
LINC00540-203ENST00000631321 NDUFA9Q16795 377 aa12.08□□□□□ -0.48
LINC00540-203ENST00000631321 AKAP14Q86UN6 197 aa12.08□□□□□ -0.48
LINC00540-203ENST00000631321 CLIP4Q8N3C7 705 aa12.08□□□□□ -0.48
LINC00540-203ENST00000631321 VANGL1Q8TAA9 524 aaPredicted RBP12.08□□□□□ -0.48
LINC00540-203ENST00000631321 SPPL3Q8TCT6 385 aa12.08□□□□□ -0.48
LINC00540-203ENST00000631321 FGF11Q92914 225 aa12.08□□□□□ -0.48
LINC00540-203ENST00000631321 RAB7BQ96AH8 199 aa12.08□□□□□ -0.48
LINC00540-203ENST00000631321 ZNF707Q96C28 371 aaPredicted RBP12.08□□□□□ -0.48
LINC00540-203ENST00000631321 TSSK6Q9BXA6 273 aa12.08□□□□□ -0.48
LINC00540-203ENST00000631321 ASPNQ9BXN1 380 aa12.08□□□□□ -0.48
LINC00540-203ENST00000631321 POLDIP3Q9BY77 421 aaKnown RBP12.08□□□□□ -0.48
LINC00540-203ENST00000631321 SMURF1Q9HCE7 757 aa12.08□□□□□ -0.48
LINC00540-203ENST00000631321 BCL2L10Q9HD36 194 aa12.08□□□□□ -0.48
LINC00540-203ENST00000631321 NDUFB11Q9NX14 153 aa12.08□□□□□ -0.48
LINC00540-203ENST00000631321 TEX10Q9NXF1 929 aaPredicted RBP12.08□□□□□ -0.48
LINC00540-203ENST00000631321 SEC14L3Q9UDX4 400 aa12.08□□□□□ -0.48
LINC00540-203ENST00000631321 CAB39Q9Y376 341 aaPredicted RBP12.08□□□□□ -0.48
LINC00540-203ENST00000631321 MUC22E2RYF6 1773 aaPredicted RBP12.08□□□□□ -0.48
LINC00540-203ENST00000631321 FEZF1A0PJY2 475 aa12.08□□□□□ -0.48
LINC00540-203ENST00000631321 HTR3EA5X5Y0 456 aa12.08□□□□□ -0.48
LINC00540-203ENST00000631321 PDZK1P1A8MUH7 402 aa12.08□□□□□ -0.48
LINC00540-203ENST00000631321 H7BY64 318 aa12.08□□□□□ -0.48
LINC00540-203ENST00000631321 SH3BP5O60239 455 aa12.08□□□□□ -0.48
LINC00540-203ENST00000631321 UGT2B17O75795 530 aa12.08□□□□□ -0.48
LINC00540-203ENST00000631321 CKMT1AP12532 417 aa12.08□□□□□ -0.48
LINC00540-203ENST00000631321 DRD2P14416 443 aa12.08□□□□□ -0.48
LINC00540-203ENST00000631321 P2RY2P41231 377 aa12.08□□□□□ -0.48
LINC00540-203ENST00000631321 MAGEA10P43363 369 aaPredicted RBP12.08□□□□□ -0.48
LINC00540-203ENST00000631321 VEGFBP49765 207 aa12.08□□□□□ -0.48
LINC00540-203ENST00000631321 MLLT11Q13015 90 aaPredicted RBP12.08□□□□□ -0.48
LINC00540-203ENST00000631321 TP53BP2Q13625 1128 aa12.08□□□□□ -0.48
LINC00540-203ENST00000631321 ZNF234Q14588 700 aa12.08□□□□□ -0.48
LINC00540-203ENST00000631321 SYPL1Q16563 259 aa12.08□□□□□ -0.48
LINC00540-203ENST00000631321 PODNL1Q6PEZ8 512 aa12.08□□□□□ -0.48
LINC00540-203ENST00000631321 COMTD1Q86VU5 262 aa12.08□□□□□ -0.48
LINC00540-203ENST00000631321 SLC34A3Q8N130 599 aa12.08□□□□□ -0.48
LINC00540-203ENST00000631321 LINC00471Q8N535 108 aa12.08□□□□□ -0.48
LINC00540-203ENST00000631321 SP7Q8TDD2 431 aaPredicted RBP12.08□□□□□ -0.48
LINC00540-203ENST00000631321 ERLEC1Q96DZ1 483 aa12.08□□□□□ -0.48
LINC00540-203ENST00000631321 PRAP1Q96NZ9 151 aa12.08□□□□□ -0.48
LINC00540-203ENST00000631321 WDFY2Q96P53 400 aa12.08□□□□□ -0.48
LINC00540-203ENST00000631321 CNPPD1Q9BV87 410 aa12.08□□□□□ -0.48
LINC00540-203ENST00000631321 MVB12BQ9H7P6 319 aa12.08□□□□□ -0.48
LINC00540-203ENST00000631321 STUB1Q9UNE7 303 aa12.08□□□□□ -0.48
LINC00540-203ENST00000631321 MRPS23Q9Y3D9 190 aaKnown RBP12.08□□□□□ -0.48
LINC00540-203ENST00000631321 SLC35F4A4IF30 521 aa12.07□□□□□ -0.48
LINC00540-203ENST00000631321 ZNF670-ZNF695F2Z2N8 137 aa12.07□□□□□ -0.48
LINC00540-203ENST00000631321 H3BN98 237 aa12.07□□□□□ -0.48
LINC00540-203ENST00000631321 CLEC3AO75596 197 aa12.07□□□□□ -0.48
LINC00540-203ENST00000631321 HBQ1P09105 142 aa12.07□□□□□ -0.48
LINC00540-203ENST00000631321 OR12D1P0DN82 309 aa12.07□□□□□ -0.48
LINC00540-203ENST00000631321 PSMB5P28074 263 aa12.07□□□□□ -0.48
LINC00540-203ENST00000631321 TNFSF8P32971 234 aa12.07□□□□□ -0.48
LINC00540-203ENST00000631321 RPS19P39019 145 aaKnown RBP12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms