RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 GPR26Q8NDV2 337 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 HSH2DQ96JZ2 352 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 MIEF1Q9NQG6 463 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 KPTNQ9Y664 436 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 ROBO3Q96MS0 1386 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 SMAD9O15198 467 aaKnown RBP4.75□□□□□ -1.65
VPS13D-213ENST00000613099 CCR7P32248 378 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 MAP2K6P52564 334 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 DCST2Q5T1A1 773 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 MAMSTRQ6ZN01 415 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 CCDC54Q8NEL0 328 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 BHLHE41Q9C0J9 482 aaPredicted RBP4.75□□□□□ -1.65
VPS13D-213ENST00000613099 GPATCH2Q9NW75 528 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 RPS6KB2Q9UBS0 482 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 ZNF629Q9UEG4 869 aaPredicted RBP4.75□□□□□ -1.65
VPS13D-213ENST00000613099 PCDHA10Q9Y5I2 948 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 TAF1P21675 1872 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 ACOT7O00154 380 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 UBFD1O14562 309 aaKnown RBP4.75□□□□□ -1.65
VPS13D-213ENST00000613099 CILPO75339 1184 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 RGS11O94810 467 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 IFNGR1P15260 489 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 ADRA1BP35368 520 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 EPHA5P54756 1037 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 ACTA2P62736 377 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 ACTG2P63267 376 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 ACTC1P68032 377 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 ACTA1P68133 377 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 SORDQ00796 357 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 LARS2Q15031 903 aaKnown RBP4.75□□□□□ -1.65
VPS13D-213ENST00000613099 KIAA1191Q96A73 305 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 PRR11Q96HE9 360 aaPredicted RBP4.75□□□□□ -1.65
VPS13D-213ENST00000613099 NELL2Q99435 816 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 MICU1Q9BPX6 476 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 TCAF2A6NFQ2 919 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 PRPS2P11908 318 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 CPT2P23786 658 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 CRABP1P29762 137 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 CLCN4P51793 760 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 TAS2R40P59535 323 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 NOL9Q5SY16 702 aaKnown RBP4.75□□□□□ -1.65
VPS13D-213ENST00000613099 CEACAM19Q7Z692 300 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 PIP5K1AQ99755 562 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 CCDC3Q9BQI4 270 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 RBM22Q9NW64 420 aaKnown RBP eCLIP4.75□□□□□ -1.652e-7■■■■□ 24.2
VPS13D-213ENST00000613099 USP21Q9UK80 565 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 DLX3O60479 287 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 FBP1P09467 338 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 TGM3Q08188 693 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 C9orf152Q5JTZ5 239 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 ST6GAL2Q96JF0 529 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 GAL3ST4Q96RP7 486 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 EDEM2Q9BV94 578 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 SORBS1Q9BX66 1292 aaKnown RBP4.75□□□□□ -1.65
VPS13D-213ENST00000613099 POTEKPQ9BYX7 375 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 SOX17Q9H6I2 414 aaPredicted RBP4.75□□□□□ -1.65
VPS13D-213ENST00000613099 TRPC4Q9UBN4 977 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 PSAT1Q9Y617 370 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 CD34P28906 385 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 HCAR3P49019 387 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 S100A10P60903 97 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 RBBP4Q09028 425 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 SF1Q15637 639 aaKnown RBP4.75□□□□□ -1.65
VPS13D-213ENST00000613099 LCLAT1Q6UWP7 414 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 GPAT4Q86UL3 456 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 LGI4Q8N135 537 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 C15orf54Q8N8G6 183 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 CGRRF1Q99675 332 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 PRDM12Q9H4Q4 367 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 POPDC2Q9HBU9 364 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 CPA4Q9UI42 421 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 RBBP9O75884 186 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 PKMP14618 531 aaKnown RBP4.75□□□□□ -1.65
VPS13D-213ENST00000613099 NKX3-2P78367 333 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 EMX2Q04743 252 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 SLC35B2Q8TB61 432 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 TMEM143Q96AN5 459 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 PTPRHQ9HD43 1115 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 SBF2Q86WG5 1849 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 RPLP1P05386 114 aaKnown RBP4.75□□□□□ -1.65
VPS13D-213ENST00000613099 STSP08842 583 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 SLC17A1Q14916 467 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 TMEM88Q6PEY1 159 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 REC114Q7Z4M0 266 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 TPRA1Q86W33 373 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 PABPC5Q96DU9 382 aaKnown RBP4.75□□□□□ -1.65
VPS13D-213ENST00000613099 TMEM43Q9BTV4 400 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 BRINP2Q9C0B6 783 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 ENKD1Q9H0I2 346 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 PIH1D1Q9NWS0 290 aaKnown RBP4.75□□□□□ -1.65
VPS13D-213ENST00000613099 ZDHHC2Q9UIJ5 367 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 MBD1Q9UIS9 605 aaPredicted RBP4.75□□□□□ -1.65
VPS13D-213ENST00000613099 LRIT2A6NDA9 550 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 B4DXG7 233 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 USP17L10C9JJH3 530 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 SLC37A4O43826 429 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 FGF18O76093 207 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 CYB5AP00167 134 aa4.75□□□□□ -1.65
VPS13D-213ENST00000613099 ANXA7P20073 488 aaKnown RBP4.75□□□□□ -1.65
VPS13D-213ENST00000613099 DGKAP23743 735 aa4.75□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms