RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 PLD4Q96BZ4 506 aa17.43■□□□□ 0.38
UPF1-210ENST00000600689 QRFPRQ96P65 431 aa17.43■□□□□ 0.38
UPF1-210ENST00000600689 KLF16Q9BXK1 252 aaPredicted RBP17.43■□□□□ 0.38
UPF1-210ENST00000600689 GON7Q9BXV9 100 aa17.43■□□□□ 0.38
UPF1-210ENST00000600689 PPIL3Q9H2H8 161 aaKnown RBP17.43■□□□□ 0.38
UPF1-210ENST00000600689 SPATA6Q9NWH7 488 aaPredicted RBP17.43■□□□□ 0.38
UPF1-210ENST00000600689 RPL36Q9Y3U8 105 aaKnown RBP17.43■□□□□ 0.38
UPF1-210ENST00000600689 A0A1W2PRB8 838 aa17.42■□□□□ 0.38
UPF1-210ENST00000600689 DVL2O14641 736 aa17.42■□□□□ 0.38
UPF1-210ENST00000600689 PRMT3O60678 531 aa17.42■□□□□ 0.38
UPF1-210ENST00000600689 ALPPP05187 535 aa17.42■□□□□ 0.38
UPF1-210ENST00000600689 OSMP13725 252 aa17.42■□□□□ 0.38
UPF1-210ENST00000600689 ATP1B2P14415 290 aaPredicted RBP17.42■□□□□ 0.38
UPF1-210ENST00000600689 HNMTP50135 292 aa17.42■□□□□ 0.38
UPF1-210ENST00000600689 MAPK12P53778 367 aa17.42■□□□□ 0.38
UPF1-210ENST00000600689 MLLT1Q03111 559 aaPredicted RBP17.42■□□□□ 0.38
UPF1-210ENST00000600689 CDKN3Q16667 212 aa17.42■□□□□ 0.38
UPF1-210ENST00000600689 TXNDC8Q6A555 127 aa17.42■□□□□ 0.38
UPF1-210ENST00000600689 SLC30A8Q8IWU4 369 aa17.42■□□□□ 0.38
UPF1-210ENST00000600689 M0R3H8 397 aa17.42■□□□□ 0.38
UPF1-210ENST00000600689 BTN3A3O00478 584 aa17.42■□□□□ 0.38
UPF1-210ENST00000600689 LYRM1O43325 122 aa17.42■□□□□ 0.38
UPF1-210ENST00000600689 ABLIM3O94929 683 aa17.42■□□□□ 0.38
UPF1-210ENST00000600689 PRPH2P23942 346 aa17.42■□□□□ 0.38
UPF1-210ENST00000600689 SERPINA4P29622 427 aa17.42■□□□□ 0.38
UPF1-210ENST00000600689 ASMTP46597 345 aa17.42■□□□□ 0.38
UPF1-210ENST00000600689 CSTF1Q05048 431 aaKnown RBP17.42■□□□□ 0.38
UPF1-210ENST00000600689 HSPB3Q12988 150 aa17.42■□□□□ 0.38
UPF1-210ENST00000600689 NCF4Q15080 339 aa17.42■□□□□ 0.38
UPF1-210ENST00000600689 SNAPC1Q16533 368 aa17.42■□□□□ 0.38
UPF1-210ENST00000600689 RETSATQ6NUM9 610 aa17.42■□□□□ 0.38
UPF1-210ENST00000600689 RNF165Q6ZSG1 346 aa17.42■□□□□ 0.38
UPF1-210ENST00000600689 OR52I1Q8NGK6 324 aa17.42■□□□□ 0.38
UPF1-210ENST00000600689 ABCG4Q9H172 646 aa17.42■□□□□ 0.38
UPF1-210ENST00000600689 REEP4Q9H6H4 257 aa17.42■□□□□ 0.38
UPF1-210ENST00000600689 BEX1Q9HBH7 125 aa17.42■□□□□ 0.38
UPF1-210ENST00000600689 SLC25A19Q9HC21 320 aa17.42■□□□□ 0.38
UPF1-210ENST00000600689 MIEF1Q9NQG6 463 aa17.42■□□□□ 0.38
UPF1-210ENST00000600689 IL20RAQ9UHF4 553 aa17.42■□□□□ 0.38
UPF1-210ENST00000600689 ANGPT4Q9Y264 503 aa17.42■□□□□ 0.38
UPF1-210ENST00000600689 ANAPC1Q9H1A4 1944 aa17.42■□□□□ 0.38
UPF1-210ENST00000600689 CD8B2A6NJW9 211 aa17.41■□□□□ 0.38
UPF1-210ENST00000600689 GTPBP1O00178 669 aaKnown RBP17.41■□□□□ 0.38
UPF1-210ENST00000600689 MPZL2O60487 215 aa17.41■□□□□ 0.38
UPF1-210ENST00000600689 PDE9AO76083 593 aa17.41■□□□□ 0.38
UPF1-210ENST00000600689 RECKO95980 971 aa17.41■□□□□ 0.38
UPF1-210ENST00000600689 CD8BP10966 210 aa17.41■□□□□ 0.38
UPF1-210ENST00000600689 RHCEP18577 417 aa17.41■□□□□ 0.38
UPF1-210ENST00000600689 MYL12AP19105 171 aa17.41■□□□□ 0.38
UPF1-210ENST00000600689 PDHA2P29803 388 aa17.41■□□□□ 0.38
UPF1-210ENST00000600689 SLC9A3P48764 834 aa17.41■□□□□ 0.38
UPF1-210ENST00000600689 GINS1Q14691 196 aa17.41■□□□□ 0.38
UPF1-210ENST00000600689 LAMTOR1Q6IAA8 161 aa17.41■□□□□ 0.38
UPF1-210ENST00000600689 CHST9Q7L1S5 443 aa17.41■□□□□ 0.38
UPF1-210ENST00000600689 DNAJB7Q7Z6W7 309 aaPredicted RBP17.41■□□□□ 0.38
UPF1-210ENST00000600689 MRPS31Q92665 395 aaKnown RBP17.41■□□□□ 0.38
UPF1-210ENST00000600689 BACE2Q9Y5Z0 518 aa17.41■□□□□ 0.38
UPF1-210ENST00000600689 IQCMA0A1B0GVH7 501 aa17.41■□□□□ 0.38
UPF1-210ENST00000600689 PRRG1O14668 218 aa17.41■□□□□ 0.38
UPF1-210ENST00000600689 ARHGEF15O94989 841 aa17.41■□□□□ 0.38
UPF1-210ENST00000600689 PRKAR1AP10644 381 aa17.41■□□□□ 0.38
UPF1-210ENST00000600689 CD70P32970 193 aa17.41■□□□□ 0.38
UPF1-210ENST00000600689 FABP5Q01469 135 aa17.41■□□□□ 0.38
UPF1-210ENST00000600689 LYPLAL1Q5VWZ2 237 aa17.41■□□□□ 0.38
UPF1-210ENST00000600689 ACSM5Q6NUN0 579 aa17.41■□□□□ 0.38
UPF1-210ENST00000600689 CPA6Q8N4T0 437 aa17.41■□□□□ 0.38
UPF1-210ENST00000600689 GDPD1Q8N9F7 314 aa17.41■□□□□ 0.38
UPF1-210ENST00000600689 RSPO3Q9BXY4 272 aaPredicted RBP17.41■□□□□ 0.38
UPF1-210ENST00000600689 STOX2Q9P2F5 926 aaPredicted RBP17.41■□□□□ 0.38
UPF1-210ENST00000600689 I3L521 148 aa17.41■□□□□ 0.38
UPF1-210ENST00000600689 FABP7O15540 132 aa17.41■□□□□ 0.38
UPF1-210ENST00000600689 SGTAO43765 313 aa17.41■□□□□ 0.38
UPF1-210ENST00000600689 LZTS3O60299 673 aaPredicted RBP17.41■□□□□ 0.38
UPF1-210ENST00000600689 NME6O75414 186 aaPredicted RBP17.41■□□□□ 0.38
UPF1-210ENST00000600689 IL3P08700 152 aa17.41■□□□□ 0.38
UPF1-210ENST00000600689 CBSLP0DN79 551 aa17.41■□□□□ 0.38
UPF1-210ENST00000600689 CBSP35520 551 aa17.41■□□□□ 0.38
UPF1-210ENST00000600689 PXNP49023 591 aaPredicted RBP17.41■□□□□ 0.38
UPF1-210ENST00000600689 DSTNP60981 165 aa17.41■□□□□ 0.38
UPF1-210ENST00000600689 SLBPQ14493 270 aaKnown RBP eCLIP17.41■□□□□ 0.38
UPF1-210ENST00000600689 POU4F3Q15319 338 aa17.41■□□□□ 0.38
UPF1-210ENST00000600689 LIPJQ5W064 366 aa17.41■□□□□ 0.38
UPF1-210ENST00000600689 Q6ZVL8 140 aa17.41■□□□□ 0.38
UPF1-210ENST00000600689 OR4D11Q8NGI4 311 aa17.41■□□□□ 0.38
UPF1-210ENST00000600689 NRTNQ99748 197 aa17.41■□□□□ 0.38
UPF1-210ENST00000600689 C2orf49Q9BVC5 232 aaPredicted RBP17.41■□□□□ 0.38
UPF1-210ENST00000600689 ZNF334Q9HCZ1 680 aaPredicted RBP17.41■□□□□ 0.38
UPF1-210ENST00000600689 B4GALT6Q9UBX8 382 aa17.41■□□□□ 0.38
UPF1-210ENST00000600689 REV1Q9UBZ9 1251 aa17.41■□□□□ 0.38
UPF1-210ENST00000600689 INMT-MINDY4F8WBC2 141 aa17.4■□□□□ 0.38
UPF1-210ENST00000600689 TSPAN6O43657 245 aa17.4■□□□□ 0.38
UPF1-210ENST00000600689 ARSBP15848 533 aa17.4■□□□□ 0.38
UPF1-210ENST00000600689 POU6F2P78424 691 aaPredicted RBP17.4■□□□□ 0.38
UPF1-210ENST00000600689 KRT74Q7RTS7 529 aa17.4■□□□□ 0.38
UPF1-210ENST00000600689 TECPR1Q7Z6L1 1165 aa17.4■□□□□ 0.38
UPF1-210ENST00000600689 HORMAD2Q8N7B1 307 aa17.4■□□□□ 0.38
UPF1-210ENST00000600689 THSD1Q9NS62 852 aa17.4■□□□□ 0.38
UPF1-210ENST00000600689 A0A0G2JN53 185 aa17.4■□□□□ 0.38
UPF1-210ENST00000600689 IFNA14P01570 189 aa17.4■□□□□ 0.38
UPF1-210ENST00000600689 SSTR2P30874 369 aa17.4■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms