RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 ITGAMP11215 1152 aa18.04■□□□□ 0.48
UPF1-209ENST00000600310 DIO3P55073 304 aa18.04■□□□□ 0.48
UPF1-209ENST00000600310 KCNAB2Q13303 367 aa18.04■□□□□ 0.48
UPF1-209ENST00000600310 PDE7AQ13946 482 aa18.04■□□□□ 0.48
UPF1-209ENST00000600310 PTGR1Q14914 329 aa18.04■□□□□ 0.48
UPF1-209ENST00000600310 PRSS53Q2L4Q9 553 aa18.04■□□□□ 0.48
UPF1-209ENST00000600310 FAM180BQ6P0A1 224 aa18.04■□□□□ 0.48
UPF1-209ENST00000600310 PCSK4Q6UW60 755 aa18.04■□□□□ 0.48
UPF1-209ENST00000600310 DGAT2L6Q6ZPD8 337 aa18.04■□□□□ 0.48
UPF1-209ENST00000600310 SPATA19Q7Z5L4 167 aa18.04■□□□□ 0.48
UPF1-209ENST00000600310 APCDD1LQ8NCL9 501 aa18.04■□□□□ 0.48
UPF1-209ENST00000600310 RIT1Q92963 219 aa18.04■□□□□ 0.48
UPF1-209ENST00000600310 GFM2Q969S9 779 aaKnown RBP18.04■□□□□ 0.48
UPF1-209ENST00000600310 MTERF3Q96E29 417 aa18.04■□□□□ 0.48
UPF1-209ENST00000600310 VMP1Q96GC9 406 aa18.04■□□□□ 0.48
UPF1-209ENST00000600310 ZNF552Q9H707 407 aaPredicted RBP18.04■□□□□ 0.48
UPF1-209ENST00000600310 CXorf21Q9HAI6 301 aa18.04■□□□□ 0.48
UPF1-209ENST00000600310 G3BP2Q9UN86 482 aaKnown RBP18.04■□□□□ 0.48
UPF1-209ENST00000600310 ENTPD4Q9Y227 616 aa18.04■□□□□ 0.48
UPF1-209ENST00000600310 MED13Q9UHV7 2174 aa18.04■□□□□ 0.48
UPF1-209ENST00000600310 DYRK3O43781 588 aa18.03■□□□□ 0.48
UPF1-209ENST00000600310 PCSK2P16519 638 aa18.03■□□□□ 0.48
UPF1-209ENST00000600310 PRPS1L1P21108 318 aa18.03■□□□□ 0.48
UPF1-209ENST00000600310 NT5EP21589 574 aa18.03■□□□□ 0.48
UPF1-209ENST00000600310 RPL3P39023 403 aaKnown RBP18.03■□□□□ 0.48
UPF1-209ENST00000600310 CLDN8P56748 225 aa18.03■□□□□ 0.48
UPF1-209ENST00000600310 C21orf58P58505 322 aa18.03■□□□□ 0.48
UPF1-209ENST00000600310 DUSP2Q05923 314 aa18.03■□□□□ 0.48
UPF1-209ENST00000600310 R3HCC1LQ7Z5L2 792 aaKnown RBP18.03■□□□□ 0.48
UPF1-209ENST00000600310 LRRC25Q8N386 305 aaPredicted RBP18.03■□□□□ 0.48
UPF1-209ENST00000600310 EXD3Q8N9H8 876 aa18.03■□□□□ 0.48
UPF1-209ENST00000600310 OR1N1Q8NGS0 311 aa18.03■□□□□ 0.48
UPF1-209ENST00000600310 CEP70Q8NHQ1 597 aa18.03■□□□□ 0.48
UPF1-209ENST00000600310 SLC2A12Q8TD20 617 aa18.03■□□□□ 0.48
UPF1-209ENST00000600310 BRIX1Q8TDN6 353 aaKnown RBP18.03■□□□□ 0.48
UPF1-209ENST00000600310 NCLNQ969V3 563 aa18.03■□□□□ 0.48
UPF1-209ENST00000600310 PPCDCQ96CD2 204 aa18.03■□□□□ 0.48
UPF1-209ENST00000600310 ABHD17AQ96GS6 310 aa18.03■□□□□ 0.48
UPF1-209ENST00000600310 SENP5Q96HI0 755 aaPredicted RBP18.03■□□□□ 0.48
UPF1-209ENST00000600310 FBXL20Q96IG2 436 aa18.03■□□□□ 0.48
UPF1-209ENST00000600310 ART5Q96L15 291 aa18.03■□□□□ 0.48
UPF1-209ENST00000600310 UBL7Q96S82 380 aaPredicted RBP18.03■□□□□ 0.48
UPF1-209ENST00000600310 SMAD5Q99717 465 aaKnown RBP18.03■□□□□ 0.48
UPF1-209ENST00000600310 NUDT9Q9BW91 350 aa18.03■□□□□ 0.48
UPF1-209ENST00000600310 SEMA4CQ9C0C4 833 aa18.03■□□□□ 0.48
UPF1-209ENST00000600310 OR8D2Q9GZM6 311 aa18.03■□□□□ 0.48
UPF1-209ENST00000600310 KCNK13Q9HB14 408 aa18.03■□□□□ 0.48
UPF1-209ENST00000600310 ATP6V1HQ9UI12 483 aa18.03■□□□□ 0.48
UPF1-209ENST00000600310 GABRR3A8MPY1 467 aa18.02■□□□□ 0.48
UPF1-209ENST00000600310 MYO1GB0I1T2 1018 aa18.02■□□□□ 0.48
UPF1-209ENST00000600310 IGKV3-11P04433 115 aa18.02■□□□□ 0.48
UPF1-209ENST00000600310 ALDOCP09972 364 aaKnown RBP18.02■□□□□ 0.48
UPF1-209ENST00000600310 SFTPCP11686 197 aa18.02■□□□□ 0.48
UPF1-209ENST00000600310 HPCAL1P37235 193 aa18.02■□□□□ 0.48
UPF1-209ENST00000600310 IDH3AP50213 366 aa18.02■□□□□ 0.48
UPF1-209ENST00000600310 CLCN2P51788 898 aa18.02■□□□□ 0.48
UPF1-209ENST00000600310 PGDP52209 483 aa18.02■□□□□ 0.48
UPF1-209ENST00000600310 RAPSNQ13702 412 aa18.02■□□□□ 0.48
UPF1-209ENST00000600310 AGAP7PQ5VUJ5 663 aa18.02■□□□□ 0.48
UPF1-209ENST00000600310 NXNQ6DKJ4 435 aa18.02■□□□□ 0.48
UPF1-209ENST00000600310 TCTN3Q6NUS6 607 aa18.02■□□□□ 0.48
UPF1-209ENST00000600310 H3F3CQ6NXT2 135 aa18.02■□□□□ 0.48
UPF1-209ENST00000600310 GALNT12Q8IXK2 581 aa18.02■□□□□ 0.48
UPF1-209ENST00000600310 CCDC116Q8IYX3 515 aa18.02■□□□□ 0.48
UPF1-209ENST00000600310 FAM9CQ8IZT9 166 aa18.02■□□□□ 0.48
UPF1-209ENST00000600310 KIF2BQ8N4N8 673 aa18.02■□□□□ 0.48
UPF1-209ENST00000600310 ZNF721Q8TF20 911 aa18.02■□□□□ 0.48
UPF1-209ENST00000600310 STON2Q8WXE9 905 aa18.02■□□□□ 0.48
UPF1-209ENST00000600310 AGAP4Q96P64 663 aa18.02■□□□□ 0.48
UPF1-209ENST00000600310 OR52B2Q96RD2 323 aa18.02■□□□□ 0.48
UPF1-209ENST00000600310 AIG1Q9NVV5 245 aa18.02■□□□□ 0.48
UPF1-209ENST00000600310 SH3BP4Q9P0V3 963 aa18.02■□□□□ 0.48
UPF1-209ENST00000600310 ZNF223Q9UK11 482 aaPredicted RBP18.02■□□□□ 0.48
UPF1-209ENST00000600310 MAPRE3Q9UPY8 281 aa18.02■□□□□ 0.48
UPF1-209ENST00000600310 PCDHGB7Q9Y5F8 929 aa18.02■□□□□ 0.48
UPF1-209ENST00000600310 FASNP49327 2511 aaKnown RBP18.02■□□□□ 0.47
UPF1-209ENST00000600310 TRBV11-1A0A0K0K1C0 115 aa18.01■□□□□ 0.47
UPF1-209ENST00000600310 SCAMP2O15127 329 aaKnown RBP18.01■□□□□ 0.47
UPF1-209ENST00000600310 ALPPP05187 535 aa18.01■□□□□ 0.47
UPF1-209ENST00000600310 DDX5P17844 614 aaKnown RBP18.01■□□□□ 0.47
UPF1-209ENST00000600310 MPIP34949 423 aa18.01■□□□□ 0.47
UPF1-209ENST00000600310 AQP5P55064 265 aa18.01■□□□□ 0.47
UPF1-209ENST00000600310 MAP4K2Q12851 820 aa18.01■□□□□ 0.47
UPF1-209ENST00000600310 ZNF267Q14586 743 aaPredicted RBP18.01■□□□□ 0.47
UPF1-209ENST00000600310 PRICKLE4Q2TBC4 344 aa18.01■□□□□ 0.47
UPF1-209ENST00000600310 LSM12Q3MHD2 195 aaKnown RBP18.01■□□□□ 0.47
UPF1-209ENST00000600310 ZNF385BQ569K4 471 aa18.01■□□□□ 0.47
UPF1-209ENST00000600310 CRB2Q5IJ48 1285 aa18.01■□□□□ 0.47
UPF1-209ENST00000600310 ANKRD26P1Q6NSI1 321 aa18.01■□□□□ 0.47
UPF1-209ENST00000600310 ACAD11Q709F0 780 aa18.01■□□□□ 0.47
UPF1-209ENST00000600310 RIMKLAQ8IXN7 391 aa18.01■□□□□ 0.47
UPF1-209ENST00000600310 KRTCAP2Q8N6L1 136 aa18.01■□□□□ 0.47
UPF1-209ENST00000600310 ZNF321PQ8N8H1 164 aa18.01■□□□□ 0.47
UPF1-209ENST00000600310 SUN3Q8TAQ9 357 aa18.01■□□□□ 0.47
UPF1-209ENST00000600310 DOK4Q8TEW6 326 aa18.01■□□□□ 0.47
UPF1-209ENST00000600310 BBS4Q96RK4 519 aa18.01■□□□□ 0.47
UPF1-209ENST00000600310 SIKE1Q9BRV8 207 aa18.01■□□□□ 0.47
UPF1-209ENST00000600310 CCDC28BQ9BUN5 200 aa18.01■□□□□ 0.47
UPF1-209ENST00000600310 CNPPD1Q9BV87 410 aa18.01■□□□□ 0.47
UPF1-209ENST00000600310 PTGFRNQ9P2B2 879 aa18.01■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms