RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 NOXRED1Q6NXP6 359 aa14.14□□□□□ -0.15
LIG1-219ENST00000600055 HSDL2Q6YN16 418 aa14.14□□□□□ -0.15
LIG1-219ENST00000600055 RNF165Q6ZSG1 346 aa14.14□□□□□ -0.15
LIG1-219ENST00000600055 LGI4Q8N135 537 aa14.14□□□□□ -0.15
LIG1-219ENST00000600055 ARMC10Q8N2F6 343 aa14.14□□□□□ -0.15
LIG1-219ENST00000600055 C7orf57Q8NEG2 295 aa14.14□□□□□ -0.15
LIG1-219ENST00000600055 RIT1Q92963 219 aa14.14□□□□□ -0.15
LIG1-219ENST00000600055 KLHL29Q96CT2 875 aa14.14□□□□□ -0.15
LIG1-219ENST00000600055 SNRNP40Q96DI7 357 aaKnown RBP14.14□□□□□ -0.15
LIG1-219ENST00000600055 UTP23Q9BRU9 249 aaKnown RBP14.14□□□□□ -0.15
LIG1-219ENST00000600055 PELOQ9BRX2 385 aaKnown RBP14.14□□□□□ -0.15
LIG1-219ENST00000600055 CNPPD1Q9BV87 410 aa14.14□□□□□ -0.15
LIG1-219ENST00000600055 HES7Q9BYE0 225 aa14.14□□□□□ -0.15
LIG1-219ENST00000600055 C1orf109Q9NX04 203 aa14.14□□□□□ -0.15
LIG1-219ENST00000600055 ABI3Q9P2A4 366 aa14.14□□□□□ -0.15
LIG1-219ENST00000600055 MAP10Q9P2G4 905 aa14.14□□□□□ -0.15
LIG1-219ENST00000600055 GIMAP2Q9UG22 337 aa14.14□□□□□ -0.15
LIG1-219ENST00000600055 ERVK-19Q9WJR5 959 aa14.14□□□□□ -0.15
LIG1-219ENST00000600055 NTNG1Q9Y2I2 539 aa14.14□□□□□ -0.15
LIG1-219ENST00000600055 CPAMD8Q8IZJ3 1885 aa14.13□□□□□ -0.15
LIG1-219ENST00000600055 TRAV17A0A0B4J275 112 aa14.13□□□□□ -0.15
LIG1-219ENST00000600055 WWP2O00308 870 aa14.13□□□□□ -0.15
LIG1-219ENST00000600055 SKAP2O75563 359 aaPredicted RBP14.13□□□□□ -0.15
LIG1-219ENST00000600055 CLPSP04118 112 aa14.13□□□□□ -0.15
LIG1-219ENST00000600055 IGKV3-11P04433 115 aa14.13□□□□□ -0.15
LIG1-219ENST00000600055 NEFHP12036 1026 aa14.13□□□□□ -0.15
LIG1-219ENST00000600055 CPMP14384 443 aa14.13□□□□□ -0.15
LIG1-219ENST00000600055 PORP16435 677 aaPredicted RBP14.13□□□□□ -0.15
LIG1-219ENST00000600055 NT5EP21589 574 aa14.13□□□□□ -0.15
LIG1-219ENST00000600055 PRPH2P23942 346 aa14.13□□□□□ -0.15
LIG1-219ENST00000600055 TACR1P25103 407 aa14.13□□□□□ -0.15
LIG1-219ENST00000600055 SLC1A6P48664 564 aa14.13□□□□□ -0.15
LIG1-219ENST00000600055 RNF4P78317 190 aa14.13□□□□□ -0.15
LIG1-219ENST00000600055 FOXK1P85037 733 aa14.13□□□□□ -0.15
LIG1-219ENST00000600055 OC90Q02509 493 aaPredicted RBP14.13□□□□□ -0.15
LIG1-219ENST00000600055 ZNF763Q0D2J5 394 aa14.13□□□□□ -0.15
LIG1-219ENST00000600055 C2orf80Q0P641 193 aa14.13□□□□□ -0.15
LIG1-219ENST00000600055 OR1C1Q15619 314 aa14.13□□□□□ -0.15
LIG1-219ENST00000600055 PRSS53Q2L4Q9 553 aa14.13□□□□□ -0.15
LIG1-219ENST00000600055 SPRED3Q2MJR0 410 aa14.13□□□□□ -0.15
LIG1-219ENST00000600055 AGBL2Q5U5Z8 902 aa14.13□□□□□ -0.15
LIG1-219ENST00000600055 C9orf40Q8IXQ3 194 aa14.13□□□□□ -0.15
LIG1-219ENST00000600055 ZNF781Q8N8C0 355 aa14.13□□□□□ -0.15
LIG1-219ENST00000600055 MDS2Q8NDY4 140 aa14.13□□□□□ -0.15
LIG1-219ENST00000600055 MIB2Q96AX9 1013 aa14.13□□□□□ -0.15
LIG1-219ENST00000600055 EXOSC8Q96B26 276 aaKnown RBP14.13□□□□□ -0.15
LIG1-219ENST00000600055 CNRIP1Q96F85 164 aaPredicted RBP14.13□□□□□ -0.15
LIG1-219ENST00000600055 FBXL20Q96IG2 436 aa14.13□□□□□ -0.15
LIG1-219ENST00000600055 C3orf30Q96M34 536 aa14.13□□□□□ -0.15
LIG1-219ENST00000600055 ZNF681Q96N22 645 aa14.13□□□□□ -0.15
LIG1-219ENST00000600055 SORT1Q99523 831 aa14.13□□□□□ -0.15
LIG1-219ENST00000600055 CXorf21Q9HAI6 301 aa14.13□□□□□ -0.15
LIG1-219ENST00000600055 ASF1BQ9NVP2 202 aa14.13□□□□□ -0.15
LIG1-219ENST00000600055 COPS7AQ9UBW8 275 aa14.13□□□□□ -0.15
LIG1-219ENST00000600055 UTS2RQ9UKP6 389 aa14.13□□□□□ -0.15
LIG1-219ENST00000600055 ZNF462Q96JM2 2506 aa14.13□□□□□ -0.15
LIG1-219ENST00000600055 SPTA1P02549 2419 aa14.12□□□□□ -0.15
LIG1-219ENST00000600055 UQCRHLA0A096LP55 91 aa14.12□□□□□ -0.15
LIG1-219ENST00000600055 TMEM114B3SHH9 223 aa14.12□□□□□ -0.15
LIG1-219ENST00000600055 NPIPB8E9PQR5 432 aa14.12□□□□□ -0.15
LIG1-219ENST00000600055 FCHO1O14526 889 aa14.12□□□□□ -0.15
LIG1-219ENST00000600055 LSM1O15116 133 aaKnown RBP14.12□□□□□ -0.15
LIG1-219ENST00000600055 DYRK3O43781 588 aa14.12□□□□□ -0.15
LIG1-219ENST00000600055 PRAMEF2O60811 474 aa14.12□□□□□ -0.15
LIG1-219ENST00000600055 ITGA10O75578 1167 aa14.12□□□□□ -0.15
LIG1-219ENST00000600055 OR2J2O76002 312 aa14.12□□□□□ -0.15
LIG1-219ENST00000600055 DRD2P14416 443 aa14.12□□□□□ -0.15
LIG1-219ENST00000600055 SSTR4P31391 388 aa14.12□□□□□ -0.15
LIG1-219ENST00000600055 GALNSP34059 522 aa14.12□□□□□ -0.15
LIG1-219ENST00000600055 HK2P52789 917 aa14.12□□□□□ -0.15
LIG1-219ENST00000600055 RPL38P63173 70 aaKnown RBP14.12□□□□□ -0.15
LIG1-219ENST00000600055 SRSF11Q05519 484 aaKnown RBP14.12□□□□□ -0.15
LIG1-219ENST00000600055 STX3Q13277 289 aa14.12□□□□□ -0.15
LIG1-219ENST00000600055 LTB4RQ15722 352 aa14.12□□□□□ -0.15
LIG1-219ENST00000600055 GALNTL6Q49A17 601 aa14.12□□□□□ -0.15
LIG1-219ENST00000600055 RFTN2Q52LD8 501 aaPredicted RBP14.12□□□□□ -0.15
LIG1-219ENST00000600055 TTMPQ5BVD1 217 aa14.12□□□□□ -0.15
LIG1-219ENST00000600055 ZNF766Q5HY98 468 aa14.12□□□□□ -0.15
LIG1-219ENST00000600055 FAM71E1Q6IPT2 247 aa14.12□□□□□ -0.15
LIG1-219ENST00000600055 FAM111BQ6SJ93 734 aa14.12□□□□□ -0.15
LIG1-219ENST00000600055 HDXQ7Z353 690 aa14.12□□□□□ -0.15
LIG1-219ENST00000600055 ZNF227Q86WZ6 799 aa14.12□□□□□ -0.15
LIG1-219ENST00000600055 GALNT12Q8IXK2 581 aa14.12□□□□□ -0.15
LIG1-219ENST00000600055 ADCY4Q8NFM4 1077 aa14.12□□□□□ -0.15
LIG1-219ENST00000600055 FAM76AQ8TAV0 307 aa14.12□□□□□ -0.15
LIG1-219ENST00000600055 PUM2Q8TB72 1066 aaKnown RBP eCLIP14.12□□□□□ -0.15
LIG1-219ENST00000600055 EGLN2Q96KS0 407 aa14.12□□□□□ -0.15
LIG1-219ENST00000600055 KLHL1Q9NR64 748 aa14.12□□□□□ -0.15
LIG1-219ENST00000600055 LRFN1Q9P244 771 aa14.12□□□□□ -0.15
LIG1-219ENST00000600055 MYOTQ9UBF9 498 aa14.12□□□□□ -0.15
LIG1-219ENST00000600055 PSME2Q9UL46 239 aa14.12□□□□□ -0.15
LIG1-219ENST00000600055 EXO1Q9UQ84 846 aaKnown RBP14.12□□□□□ -0.15
LIG1-219ENST00000600055 COPG1Q9Y678 874 aaKnown RBP14.12□□□□□ -0.15
LIG1-219ENST00000600055 ATP6AP2A0A1C7CYW4 349 aa14.11□□□□□ -0.15
LIG1-219ENST00000600055 ZNF354AO60765 605 aaPredicted RBP14.11□□□□□ -0.15
LIG1-219ENST00000600055 PEX11AO75192 247 aa14.11□□□□□ -0.15
LIG1-219ENST00000600055 ATP6AP2O75787 350 aa14.11□□□□□ -0.15
LIG1-219ENST00000600055 NEURL1O76050 574 aa14.11□□□□□ -0.15
LIG1-219ENST00000600055 JUNP05412 331 aaKnown RBP14.11□□□□□ -0.15
LIG1-219ENST00000600055 CSNK2A2P19784 350 aaPredicted RBP14.11□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms