RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 BTN2A2Q8WVV5 523 aa14.51□□□□□ -0.09
UPF1-204ENST00000596842 TMCO6Q96DC7 493 aa14.51□□□□□ -0.09
UPF1-204ENST00000596842 TMEM80Q96HE8 168 aa14.51□□□□□ -0.09
UPF1-204ENST00000596842 OR2A14Q96R47 310 aa14.51□□□□□ -0.09
UPF1-204ENST00000596842 MAPKAP1Q9BPZ7 522 aa14.51□□□□□ -0.09
UPF1-204ENST00000596842 BHLHE41Q9C0J9 482 aaPredicted RBP14.51□□□□□ -0.09
UPF1-204ENST00000596842 QRSL1Q9H0R6 528 aaKnown RBP14.51□□□□□ -0.09
UPF1-204ENST00000596842 HMX1Q9NP08 348 aaPredicted RBP14.51□□□□□ -0.09
UPF1-204ENST00000596842 DMRT3Q9NQL9 472 aa14.51□□□□□ -0.09
UPF1-204ENST00000596842 MEIOCA2RUB1 952 aa14.51□□□□□ -0.09
UPF1-204ENST00000596842 LZTS3O60299 673 aaPredicted RBP14.51□□□□□ -0.09
UPF1-204ENST00000596842 SLCO2B1O94956 709 aa14.51□□□□□ -0.09
UPF1-204ENST00000596842 RHCEP18577 417 aa14.51□□□□□ -0.09
UPF1-204ENST00000596842 VIPR1P32241 457 aa14.51□□□□□ -0.09
UPF1-204ENST00000596842 ZNF630Q2M218 657 aaPredicted RBP14.51□□□□□ -0.09
UPF1-204ENST00000596842 RNF165Q6ZSG1 346 aa14.51□□□□□ -0.09
UPF1-204ENST00000596842 CCDC149Q6ZUS6 474 aa14.51□□□□□ -0.09
UPF1-204ENST00000596842 CCDC190Q86UF4 302 aa14.51□□□□□ -0.09
UPF1-204ENST00000596842 LHFPL3Q86UP9 236 aa14.51□□□□□ -0.09
UPF1-204ENST00000596842 SLC9A6Q92581 669 aa14.51□□□□□ -0.09
UPF1-204ENST00000596842 UCN3Q969E3 161 aa14.51□□□□□ -0.09
UPF1-204ENST00000596842 REPS1Q96D71 796 aa14.51□□□□□ -0.09
UPF1-204ENST00000596842 LRR1Q96L50 414 aa14.51□□□□□ -0.09
UPF1-204ENST00000596842 MRPS7Q9Y2R9 242 aaKnown RBP14.51□□□□□ -0.09
UPF1-204ENST00000596842 RWDD3Q9Y3V2 267 aa14.51□□□□□ -0.09
UPF1-204ENST00000596842 KLK4Q9Y5K2 254 aa14.51□□□□□ -0.09
UPF1-204ENST00000596842 IGLV3-16A0A075B6K0 115 aa14.5□□□□□ -0.09
UPF1-204ENST00000596842 ATP6V1G2-DDX39BF2Z307 99 aa14.5□□□□□ -0.09
UPF1-204ENST00000596842 MRPS14O60783 128 aaKnown RBP14.5□□□□□ -0.09
UPF1-204ENST00000596842 C8AP07357 584 aa14.5□□□□□ -0.09
UPF1-204ENST00000596842 C1GALT1C1LP0DN25 315 aa14.5□□□□□ -0.09
UPF1-204ENST00000596842 OR12D1P0DN82 309 aa14.5□□□□□ -0.09
UPF1-204ENST00000596842 PRKCAP17252 672 aa14.5□□□□□ -0.09
UPF1-204ENST00000596842 SDC2P34741 201 aa14.5□□□□□ -0.09
UPF1-204ENST00000596842 DGKGP49619 791 aa14.5□□□□□ -0.09
UPF1-204ENST00000596842 HEPACAMQ14CZ8 416 aa14.5□□□□□ -0.09
UPF1-204ENST00000596842 BCL2A1Q16548 175 aa14.5□□□□□ -0.09
UPF1-204ENST00000596842 PUS10Q3MIT2 529 aaKnown RBP14.5□□□□□ -0.09
UPF1-204ENST00000596842 OR8H3Q8N146 312 aa14.5□□□□□ -0.09
UPF1-204ENST00000596842 C9orf43Q8TAL5 461 aaPredicted RBP14.5□□□□□ -0.09
UPF1-204ENST00000596842 LYSMD1Q96S90 227 aa14.5□□□□□ -0.09
UPF1-204ENST00000596842 MVB12BQ9H7P6 319 aa14.5□□□□□ -0.09
UPF1-204ENST00000596842 TAC3Q9UHF0 121 aa14.5□□□□□ -0.09
UPF1-204ENST00000596842 SLC16A5O15375 505 aa14.5□□□□□ -0.09
UPF1-204ENST00000596842 PSIP1O75475 530 aaKnown RBP14.5□□□□□ -0.09
UPF1-204ENST00000596842 PRKRAO75569 313 aaKnown RBP14.5□□□□□ -0.09
UPF1-204ENST00000596842 UGT2B17O75795 530 aa14.5□□□□□ -0.09
UPF1-204ENST00000596842 NTN1O95631 604 aa14.5□□□□□ -0.09
UPF1-204ENST00000596842 H1F0P07305 194 aaKnown RBP14.5□□□□□ -0.09
UPF1-204ENST00000596842 GABRB1P18505 474 aa14.5□□□□□ -0.09
UPF1-204ENST00000596842 PSMB5P28074 263 aa14.5□□□□□ -0.09
UPF1-204ENST00000596842 GPR1P46091 355 aa14.5□□□□□ -0.09
UPF1-204ENST00000596842 HOXC5Q00444 222 aa14.5□□□□□ -0.09
UPF1-204ENST00000596842 EIF4HQ15056 248 aaKnown RBP14.5□□□□□ -0.09
UPF1-204ENST00000596842 ZMYND11Q15326 602 aa14.5□□□□□ -0.09
UPF1-204ENST00000596842 SYPL1Q16563 259 aa14.5□□□□□ -0.09
UPF1-204ENST00000596842 IQCHQ86VS3 1027 aa14.5□□□□□ -0.09
UPF1-204ENST00000596842 ATCAYQ86WG3 371 aa14.5□□□□□ -0.09
UPF1-204ENST00000596842 TRIM69Q86WT6 500 aa14.5□□□□□ -0.09
UPF1-204ENST00000596842 OR6F1Q8NGZ6 308 aa14.5□□□□□ -0.09
UPF1-204ENST00000596842 ING5Q8WYH8 240 aa14.5□□□□□ -0.09
UPF1-204ENST00000596842 SNAPC3Q92966 411 aa14.5□□□□□ -0.09
UPF1-204ENST00000596842 MCCC1Q96RQ3 725 aaPredicted RBP14.5□□□□□ -0.09
UPF1-204ENST00000596842 HBQ1P09105 142 aa14.5□□□□□ -0.09
UPF1-204ENST00000596842 PSKH1P11801 424 aa14.5□□□□□ -0.09
UPF1-204ENST00000596842 RNF144AP50876 292 aaPredicted RBP14.5□□□□□ -0.09
UPF1-204ENST00000596842 B3GLCTQ6Y288 498 aa14.5□□□□□ -0.09
UPF1-204ENST00000596842 REM2Q8IYK8 340 aaPredicted RBP14.5□□□□□ -0.09
UPF1-204ENST00000596842 SLC5A11Q8WWX8 675 aa14.5□□□□□ -0.09
UPF1-204ENST00000596842 JPH3Q8WXH2 748 aaPredicted RBP14.5□□□□□ -0.09
UPF1-204ENST00000596842 ASB15Q8WXK1 588 aa14.5□□□□□ -0.09
UPF1-204ENST00000596842 TRMT2BQ96GJ1 504 aaKnown RBP14.5□□□□□ -0.09
UPF1-204ENST00000596842 BRF2Q9HAW0 419 aa14.5□□□□□ -0.09
UPF1-204ENST00000596842 PPM1DO15297 605 aa14.49□□□□□ -0.09
UPF1-204ENST00000596842 TGM5O43548 720 aa14.49□□□□□ -0.09
UPF1-204ENST00000596842 NCR1O76036 304 aa14.49□□□□□ -0.09
UPF1-204ENST00000596842 MSL3P1P0C860 447 aa14.49□□□□□ -0.09
UPF1-204ENST00000596842 MYL12AP19105 171 aa14.49□□□□□ -0.09
UPF1-204ENST00000596842 CBLP22681 906 aa14.49□□□□□ -0.09
UPF1-204ENST00000596842 GINS1Q14691 196 aa14.49□□□□□ -0.09
UPF1-204ENST00000596842 LYPD8Q6UX82 237 aa14.49□□□□□ -0.09
UPF1-204ENST00000596842 ECHDC3Q96DC8 303 aa14.49□□□□□ -0.09
UPF1-204ENST00000596842 MED30Q96HR3 178 aa14.49□□□□□ -0.09
UPF1-204ENST00000596842 FNDC11Q9BVV2 318 aa14.49□□□□□ -0.09
UPF1-204ENST00000596842 TAAR2Q9P1P5 351 aa14.49□□□□□ -0.09
UPF1-204ENST00000596842 STOML2Q9UJZ1 356 aa14.49□□□□□ -0.09
UPF1-204ENST00000596842 GSAPA4D1B5 854 aa14.49□□□□□ -0.09
UPF1-204ENST00000596842 PRR23AA6NEV1 266 aa14.49□□□□□ -0.09
UPF1-204ENST00000596842 CASKO14936 926 aa14.49□□□□□ -0.09
UPF1-204ENST00000596842 C1orf105O95561 183 aa14.49□□□□□ -0.09
UPF1-204ENST00000596842 C8orf89P0DMQ9 161 aa14.49□□□□□ -0.09
UPF1-204ENST00000596842 SCN1BQ07699 218 aa14.49□□□□□ -0.09
UPF1-204ENST00000596842 CRB2Q5IJ48 1285 aa14.49□□□□□ -0.09
UPF1-204ENST00000596842 TMED9Q9BVK6 235 aa14.49□□□□□ -0.09
UPF1-204ENST00000596842 CMAHPQ9Y471 501 aa14.49□□□□□ -0.09
UPF1-204ENST00000596842 A0A1B0GVC2 190 aa14.49□□□□□ -0.09
UPF1-204ENST00000596842 A6NIN4 97 aa14.49□□□□□ -0.09
UPF1-204ENST00000596842 ZAR1LA6NP61 321 aa14.49□□□□□ -0.09
UPF1-204ENST00000596842 H7BY64 318 aa14.49□□□□□ -0.09
UPF1-204ENST00000596842 PRKYO43930 277 aa14.49□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms